Wall clock time and date at job start Tue Mar 31 2020 15:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 S 1.81007 * 109.46853 * 269.97745 * 14 13 12 16 16 C 1.76201 * 99.99911 * 180.02562 * 15 14 13 17 17 N 1.31112 * 125.08350 * 0.02562 * 16 15 14 18 18 C 1.35614 * 109.42475 * 179.97438 * 17 16 15 19 19 C 1.39524 * 134.58334 * 180.02562 * 18 17 16 20 20 N 1.32288 * 118.61197 * 179.97438 * 19 18 17 21 21 C 1.32009 * 121.32181 * 359.97438 * 20 19 18 22 22 N 1.31765 * 122.35897 * 0.02562 * 21 20 19 23 23 C 1.32500 * 120.46909 * 359.97438 * 22 21 20 24 24 N 1.36846 * 125.08266 * 179.72061 * 16 15 14 25 25 H 0.96996 * 126.29742 * 0.02562 * 24 16 15 26 26 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 27 27 C 1.38101 * 120.07230 * 0.04164 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 31 31 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 32 32 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 33 33 H 1.08007 * 120.69161 * 359.97438 * 19 18 17 34 34 H 1.07999 * 118.82548 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.96698 * 180.02562 * 26 13 12 36 36 H 1.07992 * 120.03608 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 16 4.7040 -7.7509 1.2072 16 6 5.6473 -9.1771 0.7821 17 7 5.9603 -9.5371 -0.4392 18 6 6.6906 -10.6791 -0.3996 19 6 7.2813 -11.4978 -1.3627 20 7 7.9435 -12.5707 -0.9623 21 6 8.0517 -12.8721 0.3183 22 7 7.5122 -12.1314 1.2652 23 6 6.8306 -11.0379 0.9564 24 7 6.1678 -10.0715 1.6775 25 1 6.0833 -10.0326 2.6430 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0951 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6954 -6.8451 -0.4339 31 1 3.8358 -7.8156 -1.0337 32 1 5.3321 -6.8566 -0.9342 33 1 7.1995 -11.2605 -2.4132 34 1 8.6020 -13.7576 0.6002 35 1 5.2812 -4.5470 -0.1947 36 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775227118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:13 Heat of formation + Delta-G solvation = 95.376539 kcal Electronic energy + Delta-G solvation = -22694.755973 eV Core-core repulsion = 19079.010950 eV Total energy + Delta-G solvation = -3615.745023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.81413 -39.49191 -39.21672 -36.88809 -34.50074 -32.69742 -32.52563 -31.34486 -30.56694 -30.33865 -26.51496 -25.43724 -24.94580 -24.12336 -22.31618 -22.14642 -20.82351 -19.73569 -18.57134 -18.15069 -17.16700 -17.06630 -16.55539 -16.40859 -15.23384 -15.02199 -14.82942 -14.64448 -14.31155 -14.03704 -13.90838 -13.76096 -13.63936 -13.11740 -12.86341 -12.31306 -12.23303 -11.99157 -11.75812 -11.58726 -11.17936 -10.99916 -10.87878 -10.79149 -10.62830 -10.52784 -10.12595 -9.58934 -9.51219 -9.48896 -8.95920 -8.36904 -7.85041 -7.35837 -6.59685 -4.17355 0.15823 0.62317 0.80362 1.69983 2.06998 2.12586 2.17169 2.54666 3.05564 3.06458 3.10978 3.46559 3.65405 3.83373 3.85277 3.99391 4.21238 4.42939 4.87970 4.94442 4.98507 5.04496 5.14087 5.19592 5.54561 5.56382 5.66622 5.72409 5.89923 6.05387 6.23978 6.25173 6.50878 6.61797 6.72003 6.88351 7.05586 7.07596 7.16949 7.27785 7.62476 7.70514 7.84870 8.85334 9.52225 10.57375 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.038498 B = 0.001938 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.140236 B =14443.480735 C =14561.127088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.163 3.837 11 C -0.194 4.194 12 C -0.049 4.049 13 C -0.196 4.196 14 C -0.026 4.026 15 S 0.000 6.000 16 C 0.283 3.717 17 N -0.473 5.473 18 C -0.037 4.037 19 C 0.216 3.784 20 N -0.520 5.520 21 C 0.305 3.695 22 N -0.515 5.515 23 C 0.277 3.723 24 N -0.568 5.568 25 H 0.434 0.566 26 C -0.044 4.044 27 C -0.236 4.236 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.205 0.795 35 H 0.111 0.889 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.223 -18.487 1.105 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.107 3.893 11 C -0.213 4.213 12 C -0.069 4.069 13 C -0.201 4.201 14 C -0.173 4.173 15 S 0.236 5.764 16 C -0.092 4.092 17 N -0.198 5.198 18 C -0.163 4.163 19 C 0.040 3.960 20 N -0.235 5.235 21 C 0.015 3.985 22 N -0.234 5.234 23 C 0.030 3.970 24 N -0.185 5.185 25 H 0.275 0.725 26 C -0.065 4.065 27 C -0.256 4.256 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.195 0.805 34 H 0.222 0.778 35 H 0.129 0.871 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.744 -18.273 1.790 21.795 hybrid contribution 0.630 0.630 -0.048 0.892 sum 12.373 -17.643 1.742 21.620 Atomic orbital electron populations 1.70031 1.06047 1.28044 1.44826 1.25350 0.95886 0.99029 0.96214 0.85675 0.78958 0.79761 0.78866 1.19718 1.20140 1.19063 1.21394 0.91952 0.80636 1.52928 0.88757 1.83974 1.34639 1.11635 1.76807 1.19460 0.90339 0.88033 0.91444 1.20202 0.99777 0.90156 1.11191 1.20526 0.92474 0.97109 0.96783 1.18562 0.93217 0.91854 1.16426 1.22312 1.03943 0.98470 0.92589 1.86523 1.59040 1.14753 1.16111 1.26282 0.99168 0.97246 0.86474 1.71073 1.17683 1.12520 1.18553 1.20668 1.03914 0.97249 0.94453 1.22630 0.87405 0.86296 0.99640 1.68451 1.18167 1.17436 1.19471 1.24773 0.93665 0.97055 0.83036 1.67206 1.11639 1.04427 1.40098 1.19077 0.96348 0.91397 0.90188 1.42621 1.45250 1.20237 1.10420 0.72456 1.20636 0.98578 0.91483 0.95760 1.21148 0.93734 0.98973 1.11704 0.91753 0.86133 0.86629 0.88277 0.88324 0.80451 0.77850 0.87064 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.03 13.67 55.48 0.76 -23.27 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.55 29.55 -169.99 -5.02 14.52 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.39 -10.40 9.49 30.89 0.29 -10.10 16 8 H 0.10 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.54 9.76 0.05 0.00 -4.54 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.19 -3.75 9.99 -39.39 -0.39 -4.14 16 12 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 13 C -0.20 -2.97 5.14 -104.58 -0.54 -3.51 16 14 C -0.03 -0.32 5.28 36.00 0.19 -0.13 16 15 S 0.00 0.00 22.29 -107.50 -2.40 -2.40 16 16 C 0.28 3.29 8.21 -88.19 -0.72 2.57 16 17 N -0.47 -6.01 10.57 -10.82 -0.11 -6.13 16 18 C -0.04 -0.44 7.28 -84.68 -0.62 -1.06 16 19 C 0.22 2.16 11.38 -16.88 -0.19 1.96 16 20 N -0.52 -5.15 10.41 -14.31 -0.15 -5.29 16 21 C 0.30 2.77 12.26 -91.99 -1.13 1.65 16 22 N -0.51 -5.67 10.47 -13.75 -0.14 -5.82 16 23 C 0.28 3.27 8.51 -155.59 -1.32 1.95 16 24 N -0.57 -5.89 6.24 -12.00 -0.07 -5.96 16 25 H 0.43 3.32 8.96 -40.82 -0.37 2.95 16 26 C -0.04 -0.73 9.69 -39.61 -0.38 -1.11 16 27 C -0.24 -4.70 9.17 -39.39 -0.36 -5.06 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.10 1.16 8.08 -51.91 -0.42 0.74 16 32 H 0.10 1.17 8.08 -51.91 -0.42 0.75 16 33 H 0.18 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -30.83 337.09 -11.00 -41.83 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.02 Total: 5.75 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -5.92 Total: -13.78 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.28 Total: -46.47 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: 0.00 Total: -4.54 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.40 Total: -2.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.83 -11.00 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775227118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.206 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds