Wall clock time and date at job start Tue Mar 31 2020 15:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 S 1.81007 * 109.46853 * 269.97745 * 14 13 12 16 16 C 1.76201 * 99.99911 * 180.02562 * 15 14 13 17 17 N 1.31112 * 125.08350 * 0.02562 * 16 15 14 18 18 C 1.35614 * 109.42475 * 179.97438 * 17 16 15 19 19 C 1.39524 * 134.58334 * 180.02562 * 18 17 16 20 20 N 1.32288 * 118.61197 * 179.97438 * 19 18 17 21 21 C 1.32009 * 121.32181 * 359.97438 * 20 19 18 22 22 N 1.31765 * 122.35897 * 0.02562 * 21 20 19 23 23 C 1.32500 * 120.46909 * 359.97438 * 22 21 20 24 24 N 1.36846 * 125.08266 * 179.72061 * 16 15 14 25 25 H 0.96996 * 126.29742 * 0.02562 * 24 16 15 26 26 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 27 27 C 1.38101 * 120.07230 * 0.04164 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 31 31 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 32 32 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 33 33 H 1.08007 * 120.69161 * 359.97438 * 19 18 17 34 34 H 1.07999 * 118.82548 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.96698 * 180.02562 * 26 13 12 36 36 H 1.07992 * 120.03608 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 16 4.7040 -7.7509 1.2072 16 6 5.6473 -9.1771 0.7821 17 7 5.9603 -9.5371 -0.4392 18 6 6.6906 -10.6791 -0.3996 19 6 7.2813 -11.4978 -1.3627 20 7 7.9435 -12.5707 -0.9623 21 6 8.0517 -12.8721 0.3183 22 7 7.5122 -12.1314 1.2652 23 6 6.8306 -11.0379 0.9564 24 7 6.1678 -10.0715 1.6775 25 1 6.0833 -10.0326 2.6430 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0951 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6954 -6.8451 -0.4339 31 1 3.8358 -7.8156 -1.0337 32 1 5.3321 -6.8566 -0.9342 33 1 7.1995 -11.2605 -2.4132 34 1 8.6020 -13.7576 0.6002 35 1 5.2812 -4.5470 -0.1947 36 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775227118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:13 Heat of formation + Delta-G solvation = 77.674011 kcal Electronic energy + Delta-G solvation = -22695.523612 eV Core-core repulsion = 19079.010950 eV Total energy + Delta-G solvation = -3616.512662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.61991 -40.81412 -40.26367 -38.48320 -35.29611 -34.42391 -33.42938 -32.72991 -31.81867 -31.39332 -28.01929 -26.85277 -26.00309 -24.93108 -23.66117 -23.16339 -22.26742 -20.55773 -19.88073 -19.40093 -18.81279 -17.88475 -17.47459 -17.24127 -16.49172 -16.38437 -16.08663 -15.97545 -15.59752 -15.32626 -15.17011 -14.83490 -14.60007 -14.50564 -14.31224 -13.73769 -13.39146 -13.04248 -13.01353 -12.80909 -12.61456 -12.41399 -12.34497 -12.12243 -11.81669 -11.68561 -11.20418 -10.94178 -10.78414 -10.40781 -10.29779 -9.81373 -8.94981 -8.73776 -8.48098 -6.15650 -0.61300 -0.34165 0.00388 0.53283 0.58708 1.12981 1.27697 1.36791 1.45007 1.53617 1.56274 2.17517 2.69744 2.83431 2.89548 3.09654 3.17027 3.30026 3.45528 3.48214 3.77121 3.93794 4.15003 4.17555 4.32231 4.48754 4.56693 4.69630 4.76842 4.78969 5.03925 5.13744 5.18471 5.26108 5.51537 5.52952 5.69144 5.69308 5.84700 6.01690 6.14862 6.24912 6.95914 6.96738 7.75553 8.74514 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.038498 B = 0.001938 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.140236 B =14443.480735 C =14561.127088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.227 6.227 10 C 0.124 3.876 11 C -0.205 4.205 12 C -0.042 4.042 13 C -0.165 4.165 14 C -0.030 4.030 15 S 0.024 5.976 16 C 0.275 3.725 17 N -0.485 5.485 18 C -0.062 4.062 19 C 0.221 3.779 20 N -0.527 5.527 21 C 0.309 3.691 22 N -0.530 5.530 23 C 0.265 3.735 24 N -0.559 5.559 25 H 0.444 0.556 26 C -0.043 4.043 27 C -0.244 4.244 28 H 0.273 0.727 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.202 0.798 34 H 0.240 0.760 35 H 0.144 0.856 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.168 -21.316 0.930 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.073 3.927 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.169 4.169 14 C -0.177 4.177 15 S 0.259 5.741 16 C -0.101 4.101 17 N -0.211 5.211 18 C -0.188 4.188 19 C 0.046 3.954 20 N -0.243 5.243 21 C 0.020 3.980 22 N -0.250 5.250 23 C 0.018 3.982 24 N -0.178 5.178 25 H 0.288 0.712 26 C -0.063 4.063 27 C -0.263 4.263 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.170 0.830 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.219 0.781 34 H 0.256 0.744 35 H 0.162 0.838 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.723 -21.154 1.623 25.824 hybrid contribution -0.026 0.901 -0.020 0.902 sum 14.697 -20.253 1.603 25.075 Atomic orbital electron populations 1.70175 1.08017 1.28870 1.48475 1.26584 0.96829 1.02767 0.95807 0.84597 0.77885 0.74612 0.79228 1.18877 1.19766 1.17525 1.21843 0.92615 0.81283 1.53142 0.87781 1.83947 1.36112 1.12693 1.80580 1.20026 0.91681 0.87971 0.93072 1.20453 1.00203 0.90369 1.11376 1.20920 0.92905 0.97309 0.95006 1.18914 0.93213 0.92857 1.11874 1.22277 1.04212 0.97183 0.94067 1.86413 1.59278 1.14753 1.13641 1.26150 0.99714 0.97562 0.86638 1.70998 1.18028 1.12984 1.19083 1.20941 1.04983 0.97712 0.95138 1.23087 0.86148 0.85644 1.00548 1.68568 1.18381 1.17451 1.19853 1.25581 0.92444 0.97310 0.82641 1.67317 1.12360 1.04614 1.40719 1.19325 0.96622 0.91829 0.90463 1.42550 1.44670 1.19674 1.10904 0.71224 1.20978 1.00126 0.90628 0.94583 1.21251 0.92988 1.00148 1.11938 0.91801 0.86484 0.82978 0.86866 0.87096 0.78143 0.74377 0.83781 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.93 13.67 21.62 0.30 -54.64 16 2 C -0.02 -1.21 5.49 84.84 0.47 -0.74 16 3 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.41 -23.12 9.49 67.92 0.64 -22.48 16 8 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.13 9.76 -22.72 -0.22 -13.35 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.20 -8.01 9.99 22.39 0.22 -7.79 16 12 C -0.04 -1.23 9.69 22.25 0.22 -1.02 16 13 C -0.17 -4.47 5.14 -19.84 -0.10 -4.57 16 14 C -0.03 -0.61 5.28 71.24 0.38 -0.23 16 15 S 0.02 0.47 22.29 -56.49 -1.26 -0.79 16 16 C 0.27 5.58 8.21 179.50 1.47 7.06 16 17 N -0.48 -10.92 10.57 -188.14 -1.99 -12.91 16 18 C -0.06 -1.34 7.28 39.54 0.29 -1.05 16 19 C 0.22 3.82 11.38 84.93 0.97 4.79 16 20 N -0.53 -8.94 10.41 -199.20 -2.07 -11.01 16 21 C 0.31 4.73 12.26 180.83 2.22 6.95 16 22 N -0.53 -10.40 10.47 -197.42 -2.07 -12.47 16 23 C 0.26 5.63 8.51 133.96 1.14 6.77 16 24 N -0.56 -10.24 6.24 -191.87 -1.20 -11.44 16 25 H 0.44 5.78 8.96 -92.71 -0.83 4.94 16 26 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 27 C -0.24 -9.78 9.17 22.39 0.21 -9.58 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.11 2.12 8.08 -2.39 -0.02 2.10 16 32 H 0.11 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 36 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 Total: -1.00 -71.98 337.09 2.33 -69.66 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.33 Total: 20.46 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 8.48 Total: -17.03 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -7.03 Total: -102.48 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.22 Total: -13.35 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.26 Total: -0.79 kcal Total: -71.98 2.33 -69.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775227118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.331 kcal (2) G-P(sol) polarization free energy of solvation -71.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds