Wall clock time and date at job start Tue Mar 31 2020 15:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47040 * 269.99891 * 3 2 1 5 5 H 1.48507 * 109.47096 * 29.99690 * 3 2 1 6 6 H 1.48493 * 109.47037 * 149.99753 * 3 2 1 7 7 C 1.38800 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99949 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99947 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99947 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47120 * 29.99678 * 14 13 11 16 16 C 1.52996 * 109.46982 * 149.99857 * 14 13 11 17 17 H 1.09003 * 109.51969 * 174.16084 * 16 14 13 18 18 C 1.53178 * 109.52465 * 54.03477 * 16 14 13 19 19 C 1.53178 * 109.03949 * 183.05119 * 18 16 14 20 20 C 1.53094 * 109.16261 * 56.97599 * 19 18 16 21 21 O 1.42902 * 109.41874 * 302.39335 * 20 19 18 22 22 C 1.43035 * 114.13056 * 61.16131 * 21 20 19 23 23 C 1.52996 * 109.46694 * 269.99845 * 14 13 11 24 24 F 1.39905 * 109.47286 * 305.75717 * 23 14 13 25 25 F 1.39899 * 109.47480 * 65.75971 * 23 14 13 26 26 F 1.39904 * 109.46960 * 185.76082 * 23 14 13 27 27 H 0.96999 * 120.00226 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.46989 * 59.99903 * 10 9 7 29 29 H 1.09004 * 109.46486 * 300.00038 * 10 9 7 30 30 H 1.09003 * 109.54526 * 302.91755 * 18 16 14 31 31 H 1.09005 * 109.54348 * 63.18097 * 18 16 14 32 32 H 1.08994 * 109.52550 * 176.88762 * 19 18 16 33 33 H 1.09008 * 109.52113 * 297.07400 * 19 18 16 34 34 H 1.09000 * 109.47796 * 62.38351 * 20 19 18 35 35 H 1.09005 * 109.47770 * 182.41131 * 20 19 18 36 36 H 1.09002 * 109.56770 * 178.89375 * 22 21 20 37 37 H 1.09000 * 109.46953 * 58.80582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3411 -2.2997 0.0025 13 8 6.0438 -4.4895 0.0026 14 6 7.4866 -4.6531 0.0043 15 1 7.9473 -3.8097 0.5186 16 6 7.8517 -5.9518 0.7260 17 1 8.9238 -6.1283 0.6381 18 6 7.0872 -7.1200 0.0958 19 6 7.4019 -8.4011 0.8743 20 6 7.0385 -8.1960 2.3473 21 8 7.7607 -7.0761 2.8634 22 6 7.4712 -5.8398 2.2047 23 6 7.9949 -4.7105 -1.4376 24 9 7.3075 -5.7097 -2.1350 25 9 7.7783 -3.4755 -2.0581 26 9 9.3639 -4.9990 -1.4383 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8892 29 1 3.6433 -3.4316 0.8907 30 1 6.0164 -6.9208 0.1391 31 1 7.3954 -7.2395 -0.9429 32 1 6.8192 -9.2273 0.4670 33 1 8.4649 -8.6272 0.7894 34 1 5.9681 -8.0102 2.4352 35 1 7.3002 -9.0897 2.9140 36 1 8.0445 -5.0366 2.6677 37 1 6.4065 -5.6231 2.2906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789655613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:02 Heat of formation + Delta-G solvation = -290.739755 kcal Electronic energy + Delta-G solvation = -27051.984898 eV Core-core repulsion = 22505.745454 eV Total energy + Delta-G solvation = -4546.239444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.37936 -47.89170 -47.80703 -40.81694 -39.50982 -36.88506 -34.45266 -32.55427 -32.44925 -30.16044 -28.71432 -25.75589 -25.52480 -24.39827 -22.64955 -21.72593 -20.34301 -18.89318 -18.73402 -18.39593 -18.00181 -17.24946 -16.59062 -16.22458 -16.04774 -15.64649 -15.11307 -15.00515 -14.85457 -14.70487 -14.46052 -14.29228 -14.22012 -13.99892 -13.96979 -13.89962 -13.31812 -13.20956 -12.89935 -12.80612 -12.37615 -12.27187 -11.83078 -11.43715 -11.40183 -11.15702 -11.10224 -10.95992 -10.82620 -10.64648 -10.46740 -9.94446 -9.79079 -9.11441 -8.71196 -7.10882 -6.39317 -4.14914 1.91471 2.12399 2.48970 2.85931 3.25106 3.31251 3.40140 3.41517 3.43104 3.69704 3.91208 4.18415 4.22349 4.27827 4.41239 4.55622 4.60995 4.66803 4.75399 4.90760 4.99526 5.02577 5.08877 5.30711 5.41436 5.42749 5.50047 5.54276 5.63302 5.76010 5.80190 5.97505 6.11910 6.81912 7.67467 7.83379 8.31750 9.05398 10.69638 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.003504 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.972864 B = 7989.077230 C = 8833.074093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.099 3.901 3 Si 0.855 3.145 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.236 1.236 7 C -0.525 4.525 8 H 0.092 0.908 9 S -0.134 6.134 10 C -0.098 4.098 11 C 0.472 3.528 12 O -0.471 6.471 13 O -0.330 6.330 14 C 0.053 3.947 15 H 0.131 0.869 16 C -0.121 4.121 17 H 0.110 0.890 18 C -0.134 4.134 19 C -0.153 4.153 20 C 0.056 3.944 21 O -0.377 6.377 22 C 0.069 3.931 23 C 0.439 3.561 24 F -0.170 7.170 25 F -0.169 7.169 26 F -0.176 7.176 27 H 0.273 0.727 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.647 -16.403 1.582 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.111 4.111 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.160 1.160 7 C -0.672 4.672 8 H 0.110 0.890 9 S 0.092 5.908 10 C -0.246 4.246 11 C 0.313 3.687 12 O -0.354 6.354 13 O -0.248 6.248 14 C -0.005 4.005 15 H 0.149 0.851 16 C -0.140 4.140 17 H 0.128 0.872 18 C -0.171 4.171 19 C -0.191 4.191 20 C -0.021 4.021 21 O -0.295 6.295 22 C -0.008 4.008 23 C 0.385 3.615 24 F -0.152 7.152 25 F -0.150 7.150 26 F -0.157 7.157 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.591 -15.158 1.701 23.283 hybrid contribution -0.760 -0.140 -0.685 1.033 sum 16.831 -15.297 1.016 22.767 Atomic orbital electron populations 1.69923 1.05879 1.27969 1.47335 1.24681 0.94449 0.98927 0.92994 0.86764 0.81828 0.83357 0.80061 1.19060 1.19695 1.15970 1.22239 0.87509 0.97823 1.59649 0.88969 1.84862 1.10322 0.98083 1.97576 1.23034 0.88645 1.05211 1.07673 1.23658 0.92562 0.80159 0.72312 1.90712 1.58463 1.43056 1.43187 1.86771 1.21191 1.32148 1.84715 1.23720 0.82385 1.03457 0.90978 0.85140 1.22076 1.02713 0.91945 0.97226 0.87207 1.21960 1.01749 0.92977 1.00452 1.22185 1.02660 0.98164 0.96073 1.22661 0.96118 0.89346 0.93964 1.87978 1.67067 1.16193 1.58281 1.22566 1.01626 0.87113 0.89485 1.20849 0.75848 0.74383 0.90441 1.93152 1.79368 1.60997 1.81642 1.93296 1.94321 1.42606 1.84753 1.93191 1.32211 1.93399 1.96908 0.91727 0.86850 0.86790 0.89856 0.89787 0.90356 0.91026 0.92683 0.88737 0.88285 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.97 55.49 0.78 -24.83 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 20.91 27.74 -169.99 -4.72 16.20 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 7 C -0.52 -14.46 10.04 30.94 0.31 -14.15 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.13 -3.20 18.55 -107.50 -1.99 -5.20 16 10 C -0.10 -1.78 6.27 36.01 0.23 -1.55 16 11 C 0.47 7.82 7.62 36.01 0.27 8.10 16 12 O -0.47 -8.92 14.26 -18.75 -0.27 -9.18 16 13 O -0.33 -4.37 8.32 -39.25 -0.33 -4.70 16 14 C 0.05 0.59 1.81 -26.74 -0.05 0.55 16 15 H 0.13 1.44 7.16 -51.93 -0.37 1.07 16 16 C -0.12 -1.09 2.12 -90.48 -0.19 -1.28 16 17 H 0.11 0.89 7.49 -51.93 -0.39 0.50 16 18 C -0.13 -1.17 4.51 -26.55 -0.12 -1.29 16 19 C -0.15 -1.10 6.14 -26.59 -0.16 -1.26 16 20 C 0.06 0.43 6.84 37.21 0.25 0.69 16 21 O -0.38 -3.75 10.77 -35.23 -0.38 -4.13 16 22 C 0.07 0.64 6.07 37.21 0.23 0.86 16 23 C 0.44 5.36 2.83 37.16 0.11 5.46 16 24 F -0.17 -2.06 14.14 2.25 0.03 -2.03 16 25 F -0.17 -2.53 16.11 2.25 0.04 -2.50 16 26 F -0.18 -1.94 16.47 2.25 0.04 -1.90 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 29 H 0.11 1.88 8.14 -51.91 -0.42 1.46 16 30 H 0.08 0.79 7.44 -51.93 -0.39 0.41 16 31 H 0.08 0.76 5.72 -51.93 -0.30 0.46 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -30.83 329.95 -5.44 -36.26 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.38 Total: -1.77 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.78 Total: -24.83 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.97 Total: -18.01 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.72 Total: 16.20 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.99 Total: -5.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.83 -5.44 -36.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789655613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.478 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds