Wall clock time and date at job start Tue Mar 31 2020 15:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47040 * 269.99891 * 3 2 1 5 5 H 1.48507 * 109.47096 * 29.99690 * 3 2 1 6 6 H 1.48493 * 109.47037 * 149.99753 * 3 2 1 7 7 C 1.38800 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99949 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99947 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99947 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47120 * 29.99678 * 14 13 11 16 16 C 1.52996 * 109.46982 * 149.99857 * 14 13 11 17 17 H 1.09003 * 109.51969 * 174.16084 * 16 14 13 18 18 C 1.53178 * 109.52465 * 54.03477 * 16 14 13 19 19 C 1.53178 * 109.03949 * 183.05119 * 18 16 14 20 20 C 1.53094 * 109.16261 * 56.97599 * 19 18 16 21 21 O 1.42902 * 109.41874 * 302.39335 * 20 19 18 22 22 C 1.43035 * 114.13056 * 61.16131 * 21 20 19 23 23 C 1.52996 * 109.46694 * 269.99845 * 14 13 11 24 24 F 1.39905 * 109.47286 * 305.75717 * 23 14 13 25 25 F 1.39899 * 109.47480 * 65.75971 * 23 14 13 26 26 F 1.39904 * 109.46960 * 185.76082 * 23 14 13 27 27 H 0.96999 * 120.00226 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.46989 * 59.99903 * 10 9 7 29 29 H 1.09004 * 109.46486 * 300.00038 * 10 9 7 30 30 H 1.09003 * 109.54526 * 302.91755 * 18 16 14 31 31 H 1.09005 * 109.54348 * 63.18097 * 18 16 14 32 32 H 1.08994 * 109.52550 * 176.88762 * 19 18 16 33 33 H 1.09008 * 109.52113 * 297.07400 * 19 18 16 34 34 H 1.09000 * 109.47796 * 62.38351 * 20 19 18 35 35 H 1.09005 * 109.47770 * 182.41131 * 20 19 18 36 36 H 1.09002 * 109.56770 * 178.89375 * 22 21 20 37 37 H 1.09000 * 109.46953 * 58.80582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3411 -2.2997 0.0025 13 8 6.0438 -4.4895 0.0026 14 6 7.4866 -4.6531 0.0043 15 1 7.9473 -3.8097 0.5186 16 6 7.8517 -5.9518 0.7260 17 1 8.9238 -6.1283 0.6381 18 6 7.0872 -7.1200 0.0958 19 6 7.4019 -8.4011 0.8743 20 6 7.0385 -8.1960 2.3473 21 8 7.7607 -7.0761 2.8634 22 6 7.4712 -5.8398 2.2047 23 6 7.9949 -4.7105 -1.4376 24 9 7.3075 -5.7097 -2.1350 25 9 7.7783 -3.4755 -2.0581 26 9 9.3639 -4.9990 -1.4383 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8892 29 1 3.6433 -3.4316 0.8907 30 1 6.0164 -6.9208 0.1391 31 1 7.3954 -7.2395 -0.9429 32 1 6.8192 -9.2273 0.4670 33 1 8.4649 -8.6272 0.7894 34 1 5.9681 -8.0102 2.4352 35 1 7.3002 -9.0897 2.9140 36 1 8.0445 -5.0366 2.6677 37 1 6.4065 -5.6231 2.2906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789655613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:00 Heat of formation + Delta-G solvation = -308.749841 kcal Electronic energy + Delta-G solvation = -27052.765874 eV Core-core repulsion = 22505.745454 eV Total energy + Delta-G solvation = -4547.020420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -51.37267 -48.86411 -48.84229 -41.99278 -40.31514 -38.06658 -35.29674 -34.69730 -33.17784 -31.49759 -29.66882 -27.90199 -26.21031 -25.26993 -23.60865 -22.75542 -21.13087 -20.14128 -19.80320 -19.68352 -19.39904 -18.50139 -17.63393 -17.13913 -17.11338 -16.92583 -16.71661 -16.09240 -15.78487 -15.68395 -15.67705 -15.41372 -15.23856 -14.98290 -14.96181 -14.89798 -14.79180 -14.55286 -14.21894 -13.64795 -13.41884 -13.38984 -13.18015 -13.03980 -12.83658 -12.47807 -12.28634 -12.02824 -11.93851 -11.79798 -11.66196 -11.29544 -11.19177 -10.64983 -10.48570 -9.07896 -8.53223 -6.27050 0.57303 0.82077 1.20524 1.31859 1.44370 1.48116 1.66863 2.22423 2.39856 2.55325 2.58665 2.85392 2.88700 2.96238 3.32458 3.47471 3.53061 3.77126 3.91884 3.99423 4.05882 4.14109 4.23728 4.35736 4.46944 4.65824 4.73721 4.79601 4.86391 4.90650 5.07177 5.11921 5.34012 5.68944 6.11207 6.16398 6.36794 6.90899 8.59032 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.003504 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.972864 B = 7989.077230 C = 8833.074093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.049 3.951 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.232 1.232 7 C -0.532 4.532 8 H 0.067 0.933 9 S -0.157 6.157 10 C -0.089 4.089 11 C 0.485 3.515 12 O -0.495 6.495 13 O -0.319 6.319 14 C 0.052 3.948 15 H 0.137 0.863 16 C -0.113 4.113 17 H 0.125 0.875 18 C -0.136 4.136 19 C -0.147 4.147 20 C 0.049 3.951 21 O -0.391 6.391 22 C 0.068 3.932 23 C 0.439 3.561 24 F -0.170 7.170 25 F -0.187 7.187 26 F -0.167 7.167 27 H 0.278 0.722 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.265 -17.320 1.892 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.156 1.156 7 C -0.680 4.680 8 H 0.085 0.915 9 S 0.069 5.931 10 C -0.237 4.237 11 C 0.326 3.674 12 O -0.381 6.381 13 O -0.236 6.236 14 C -0.005 4.005 15 H 0.154 0.846 16 C -0.132 4.132 17 H 0.143 0.857 18 C -0.173 4.173 19 C -0.185 4.185 20 C -0.027 4.027 21 O -0.310 6.310 22 C -0.009 4.009 23 C 0.385 3.615 24 F -0.151 7.151 25 F -0.168 7.168 26 F -0.148 7.148 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.212 -16.104 2.013 25.150 hybrid contribution -1.207 -0.065 -0.795 1.447 sum 18.005 -16.170 1.219 24.231 Atomic orbital electron populations 1.70005 1.07354 1.29156 1.48660 1.25523 0.95219 1.02201 0.92734 0.85919 0.80843 0.79685 0.80262 1.18749 1.18354 1.15602 1.22404 0.89763 0.96953 1.58845 0.91516 1.84681 1.07133 1.03565 1.97699 1.22947 0.90514 1.00966 1.09312 1.23154 0.91609 0.80816 0.71785 1.90712 1.58863 1.44055 1.44485 1.86735 1.22877 1.29876 1.84068 1.24008 0.80697 1.05052 0.90769 0.84583 1.22113 1.03544 0.90683 0.96840 0.85726 1.21971 1.01086 0.93691 1.00596 1.22156 1.03230 0.97685 0.95405 1.22844 0.95996 0.89292 0.94564 1.87966 1.67511 1.16729 1.58746 1.22587 1.01358 0.87416 0.89520 1.20949 0.76291 0.73738 0.90556 1.93159 1.79410 1.60806 1.81729 1.93263 1.94489 1.43900 1.85167 1.93209 1.31491 1.93250 1.96869 0.91248 0.85612 0.84904 0.90784 0.90004 0.88968 0.90506 0.92772 0.87126 0.87425 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.10 13.97 21.65 0.30 -53.80 16 2 C 0.05 2.78 5.50 84.86 0.47 3.25 16 3 Si 0.91 42.95 27.74 68.60 1.90 44.85 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.23 -10.74 6.74 99.48 0.67 -10.07 16 7 C -0.53 -29.56 10.04 67.95 0.68 -28.87 16 8 H 0.07 3.92 8.03 -2.91 -0.02 3.90 16 9 S -0.16 -7.39 18.55 -56.49 -1.05 -8.44 16 10 C -0.09 -3.14 6.27 71.24 0.45 -2.69 16 11 C 0.48 15.35 7.62 71.24 0.54 15.89 16 12 O -0.50 -18.16 14.26 21.96 0.31 -17.85 16 13 O -0.32 -7.89 8.32 -51.40 -0.43 -8.32 16 14 C 0.05 1.08 1.81 30.59 0.06 1.14 16 15 H 0.14 2.75 7.16 -2.39 -0.02 2.74 16 16 C -0.11 -1.80 2.12 -10.70 -0.02 -1.82 16 17 H 0.12 1.68 7.49 -2.39 -0.02 1.66 16 18 C -0.14 -2.09 4.51 30.71 0.14 -1.95 16 19 C -0.15 -1.75 6.14 30.69 0.19 -1.56 16 20 C 0.05 0.65 6.84 72.01 0.49 1.15 16 21 O -0.39 -6.99 10.77 -148.98 -1.60 -8.60 16 22 C 0.07 1.13 6.07 72.02 0.44 1.57 16 23 C 0.44 10.00 2.83 71.98 0.20 10.21 16 24 F -0.17 -3.84 14.14 44.97 0.64 -3.20 16 25 F -0.19 -5.42 16.11 44.97 0.72 -4.70 16 26 F -0.17 -3.36 16.47 44.97 0.74 -2.62 16 27 H 0.28 15.22 8.31 -92.71 -0.77 14.44 16 28 H 0.13 4.15 8.14 -2.40 -0.02 4.13 16 29 H 0.13 4.19 8.14 -2.39 -0.02 4.17 16 30 H 0.07 1.28 7.44 -2.39 -0.02 1.26 16 31 H 0.08 1.30 5.72 -2.38 -0.01 1.29 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.04 7.79 -2.39 -0.02 1.02 16 Total: -1.00 -65.35 329.95 6.24 -59.11 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.07 Total: 7.26 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 3.63 Total: -3.70 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.30 Total: -53.80 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.72 Total: -34.77 kcal Atomic # 9 Polarization: -12.62 SS G_CDS: 2.10 Total: -10.52 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.90 Total: 44.85 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.05 Total: -8.44 kcal Total: -65.35 6.24 -59.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789655613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.637 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -314.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -308.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds