Wall clock time and date at job start Tue Mar 31 2020 15:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00159 * 2 1 4 4 H 1.48496 * 109.47052 * 269.99580 * 3 2 1 5 5 H 1.48493 * 109.47167 * 30.00033 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00270 * 3 2 1 7 7 C 1.38798 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00070 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99966 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99690 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99784 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47271 * 330.00269 * 14 13 11 16 16 C 1.52995 * 109.47153 * 210.00045 * 14 13 11 17 17 H 1.09006 * 109.51986 * 186.05543 * 16 14 13 18 18 C 1.53178 * 109.57455 * 306.20865 * 16 14 13 19 19 C 1.53179 * 109.03913 * 176.91799 * 18 16 14 20 20 C 1.53096 * 109.16354 * 303.02417 * 19 18 16 21 21 O 1.42925 * 109.42135 * 57.60273 * 20 19 18 22 22 C 1.42905 * 114.08847 * 298.85425 * 21 20 19 23 23 C 1.52999 * 109.46781 * 89.99883 * 14 13 11 24 24 F 1.39905 * 109.47408 * 174.26007 * 23 14 13 25 25 F 1.39897 * 109.47476 * 294.26221 * 23 14 13 26 26 F 1.39903 * 109.47310 * 54.26338 * 23 14 13 27 27 H 0.97005 * 119.99581 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47512 * 59.99620 * 10 9 7 29 29 H 1.09001 * 109.47418 * 299.99865 * 10 9 7 30 30 H 1.09005 * 109.54666 * 296.78383 * 18 16 14 31 31 H 1.08998 * 109.54301 * 56.96301 * 18 16 14 32 32 H 1.09004 * 109.52063 * 62.92492 * 19 18 16 33 33 H 1.08998 * 109.52516 * 183.05395 * 19 18 16 34 34 H 1.08992 * 109.48213 * 177.58772 * 20 19 18 35 35 H 1.08997 * 109.47772 * 297.62519 * 20 19 18 36 36 H 1.08994 * 109.47766 * 301.16164 * 22 21 20 37 37 H 1.09002 * 109.47835 * 181.13525 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3411 -2.3001 0.0003 13 8 6.0436 -4.4898 0.0001 14 6 7.4863 -4.6535 -0.0006 15 1 7.9474 -3.8104 -0.5150 16 6 7.8518 -5.9526 -0.7215 17 1 8.9232 -6.1311 -0.6296 18 6 7.0828 -7.1204 -0.0961 19 6 7.3983 -8.4009 -0.8753 20 6 7.0412 -8.1930 -2.3494 21 8 7.7674 -7.0734 -2.8610 22 6 7.4771 -5.8393 -2.2015 23 6 7.9937 -4.7103 1.4416 24 9 9.3628 -4.9985 1.4434 25 9 7.7764 -3.4752 2.0615 26 9 7.3061 -5.7095 2.1389 27 1 -0.4850 0.8401 -0.0004 28 1 3.6438 -3.4315 -0.8903 29 1 3.6432 -3.4319 0.8896 30 1 7.3867 -7.2421 0.9437 31 1 6.0126 -6.9185 -0.1419 32 1 8.4605 -8.6289 -0.7865 33 1 6.8134 -9.2269 -0.4708 34 1 7.3035 -9.0861 -2.9164 35 1 5.9715 -8.0051 -2.4412 36 1 6.4131 -5.6206 -2.2914 37 1 8.0535 -5.0368 -2.6619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789655617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:05 Heat of formation + Delta-G solvation = -290.864869 kcal Electronic energy + Delta-G solvation = -27051.451271 eV Core-core repulsion = 22505.206402 eV Total energy + Delta-G solvation = -4546.244869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.37775 -47.89038 -47.80531 -40.81875 -39.51870 -36.88695 -34.45534 -32.55369 -32.45206 -30.16023 -28.71429 -25.75515 -25.52481 -24.39970 -22.65136 -21.72660 -20.34419 -18.89197 -18.73291 -18.39623 -18.00152 -17.24980 -16.59408 -16.22658 -16.04797 -15.64572 -15.11443 -15.00874 -14.85379 -14.70265 -14.45932 -14.29113 -14.21909 -13.99665 -13.96940 -13.89790 -13.31946 -13.21068 -12.89818 -12.81195 -12.37836 -12.27031 -11.83073 -11.43764 -11.39968 -11.15770 -11.10392 -10.95957 -10.82628 -10.64799 -10.46682 -9.94434 -9.79136 -9.11499 -8.71126 -7.10820 -6.39324 -4.14906 1.91482 2.12482 2.49043 2.86040 3.24606 3.31476 3.40479 3.41701 3.43267 3.69834 3.91286 4.18402 4.22396 4.27871 4.41260 4.55593 4.60897 4.66786 4.75353 4.90701 4.99537 5.02553 5.08833 5.30645 5.41420 5.42692 5.49999 5.54154 5.63308 5.76027 5.80216 5.97580 6.11951 6.82067 7.67499 7.83404 8.31733 9.05406 10.69625 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.003504 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.836975 B = 7988.590920 C = 8832.476344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.099 3.901 3 Si 0.855 3.145 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.092 0.908 9 S -0.134 6.134 10 C -0.098 4.098 11 C 0.472 3.528 12 O -0.471 6.471 13 O -0.330 6.330 14 C 0.053 3.947 15 H 0.131 0.869 16 C -0.121 4.121 17 H 0.110 0.890 18 C -0.134 4.134 19 C -0.153 4.153 20 C 0.056 3.944 21 O -0.376 6.376 22 C 0.069 3.931 23 C 0.439 3.561 24 F -0.176 7.176 25 F -0.168 7.168 26 F -0.170 7.170 27 H 0.273 0.727 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.645 -16.407 -1.418 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.111 4.111 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.159 1.159 7 C -0.672 4.672 8 H 0.110 0.890 9 S 0.092 5.908 10 C -0.246 4.246 11 C 0.313 3.687 12 O -0.354 6.354 13 O -0.248 6.248 14 C -0.005 4.005 15 H 0.149 0.851 16 C -0.140 4.140 17 H 0.128 0.872 18 C -0.171 4.171 19 C -0.191 4.191 20 C -0.021 4.021 21 O -0.295 6.295 22 C -0.008 4.008 23 C 0.385 3.615 24 F -0.157 7.157 25 F -0.150 7.150 26 F -0.152 7.152 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.590 -15.162 -1.531 23.273 hybrid contribution -0.762 -0.139 0.620 0.992 sum 16.828 -15.302 -0.911 22.763 Atomic orbital electron populations 1.69928 1.05878 1.27961 1.47340 1.24682 0.94452 0.98929 0.92996 0.86765 0.81877 0.83357 0.80030 1.19061 1.19693 1.15946 1.22240 0.87505 0.97823 1.59640 0.88970 1.84863 1.10326 0.98078 1.97580 1.23036 0.88646 1.05207 1.07673 1.23658 0.92563 0.80159 0.72313 1.90711 1.58460 1.43060 1.43185 1.86771 1.21193 1.32145 1.84714 1.23717 0.82391 1.03446 0.90975 0.85141 1.22073 1.02703 0.91949 0.97243 0.87208 1.21952 1.01719 0.92979 1.00471 1.22182 1.02676 0.98161 0.96054 1.22664 0.96082 0.89359 0.93995 1.87965 1.66807 1.16267 1.58440 1.22540 1.01638 0.87150 0.89469 1.20850 0.75839 0.74385 0.90449 1.93191 1.32204 1.93407 1.96911 1.93296 1.94309 1.42591 1.84775 1.93152 1.79359 1.61011 1.81643 0.91731 0.86837 0.86808 0.89809 0.89851 0.91028 0.90349 0.88736 0.92674 0.91670 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.97 55.49 0.78 -24.83 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 20.91 27.74 -169.99 -4.72 16.19 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 7 C -0.52 -14.46 10.04 30.94 0.31 -14.15 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.13 -3.20 18.55 -107.50 -1.99 -5.20 16 10 C -0.10 -1.78 6.27 36.01 0.23 -1.55 16 11 C 0.47 7.82 7.62 36.01 0.27 8.10 16 12 O -0.47 -8.92 14.25 -18.75 -0.27 -9.18 16 13 O -0.33 -4.37 8.32 -39.25 -0.33 -4.70 16 14 C 0.05 0.59 1.80 -26.73 -0.05 0.55 16 15 H 0.13 1.44 7.16 -51.93 -0.37 1.07 16 16 C -0.12 -1.09 2.13 -90.49 -0.19 -1.28 16 17 H 0.11 0.89 7.48 -51.93 -0.39 0.50 16 18 C -0.13 -1.17 4.52 -26.55 -0.12 -1.29 16 19 C -0.15 -1.10 6.14 -26.59 -0.16 -1.26 16 20 C 0.06 0.43 6.84 37.21 0.25 0.68 16 21 O -0.38 -3.74 10.77 -35.23 -0.38 -4.12 16 22 C 0.07 0.64 6.06 37.20 0.23 0.86 16 23 C 0.44 5.36 2.84 37.16 0.11 5.47 16 24 F -0.18 -1.94 16.47 2.25 0.04 -1.91 16 25 F -0.17 -2.54 16.11 2.25 0.04 -2.50 16 26 F -0.17 -2.07 14.16 2.25 0.03 -2.03 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.11 1.88 8.14 -51.92 -0.42 1.45 16 29 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.08 0.76 5.73 -51.93 -0.30 0.46 16 31 H 0.08 0.79 7.43 -51.93 -0.39 0.41 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.63 7.80 -51.93 -0.40 0.23 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -30.83 329.97 -5.44 -36.27 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.38 Total: -1.77 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.78 Total: -24.83 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.97 Total: -18.01 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.72 Total: 16.19 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.99 Total: -5.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.83 -5.44 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789655617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.597 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds