Wall clock time and date at job start Tue Mar 31 2020 15:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00159 * 2 1 4 4 H 1.48496 * 109.47052 * 269.99580 * 3 2 1 5 5 H 1.48493 * 109.47167 * 30.00033 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00270 * 3 2 1 7 7 C 1.38798 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00070 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99966 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47355 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99690 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99784 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.47271 * 330.00269 * 14 13 11 16 16 C 1.52995 * 109.47153 * 210.00045 * 14 13 11 17 17 H 1.09006 * 109.51986 * 186.05543 * 16 14 13 18 18 C 1.53178 * 109.57455 * 306.20865 * 16 14 13 19 19 C 1.53179 * 109.03913 * 176.91799 * 18 16 14 20 20 C 1.53096 * 109.16354 * 303.02417 * 19 18 16 21 21 O 1.42925 * 109.42135 * 57.60273 * 20 19 18 22 22 C 1.42905 * 114.08847 * 298.85425 * 21 20 19 23 23 C 1.52999 * 109.46781 * 89.99883 * 14 13 11 24 24 F 1.39905 * 109.47408 * 174.26007 * 23 14 13 25 25 F 1.39897 * 109.47476 * 294.26221 * 23 14 13 26 26 F 1.39903 * 109.47310 * 54.26338 * 23 14 13 27 27 H 0.97005 * 119.99581 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47512 * 59.99620 * 10 9 7 29 29 H 1.09001 * 109.47418 * 299.99865 * 10 9 7 30 30 H 1.09005 * 109.54666 * 296.78383 * 18 16 14 31 31 H 1.08998 * 109.54301 * 56.96301 * 18 16 14 32 32 H 1.09004 * 109.52063 * 62.92492 * 19 18 16 33 33 H 1.08998 * 109.52516 * 183.05395 * 19 18 16 34 34 H 1.08992 * 109.48213 * 177.58772 * 20 19 18 35 35 H 1.08997 * 109.47772 * 297.62519 * 20 19 18 36 36 H 1.08994 * 109.47766 * 301.16164 * 22 21 20 37 37 H 1.09002 * 109.47835 * 181.13525 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3411 -2.3001 0.0003 13 8 6.0436 -4.4898 0.0001 14 6 7.4863 -4.6535 -0.0006 15 1 7.9474 -3.8104 -0.5150 16 6 7.8518 -5.9526 -0.7215 17 1 8.9232 -6.1311 -0.6296 18 6 7.0828 -7.1204 -0.0961 19 6 7.3983 -8.4009 -0.8753 20 6 7.0412 -8.1930 -2.3494 21 8 7.7674 -7.0734 -2.8610 22 6 7.4771 -5.8393 -2.2015 23 6 7.9937 -4.7103 1.4416 24 9 9.3628 -4.9985 1.4434 25 9 7.7764 -3.4752 2.0615 26 9 7.3061 -5.7095 2.1389 27 1 -0.4850 0.8401 -0.0004 28 1 3.6438 -3.4315 -0.8903 29 1 3.6432 -3.4319 0.8896 30 1 7.3867 -7.2421 0.9437 31 1 6.0126 -6.9185 -0.1419 32 1 8.4605 -8.6289 -0.7865 33 1 6.8134 -9.2269 -0.4708 34 1 7.3035 -9.0861 -2.9164 35 1 5.9715 -8.0051 -2.4412 36 1 6.4131 -5.6206 -2.2914 37 1 8.0535 -5.0368 -2.6619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789655617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:04 Heat of formation + Delta-G solvation = -308.879641 kcal Electronic energy + Delta-G solvation = -27052.232451 eV Core-core repulsion = 22505.206402 eV Total energy + Delta-G solvation = -4547.026049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.37194 -48.86358 -48.84158 -41.99418 -40.32441 -38.06900 -35.29943 -34.69677 -33.18071 -31.49753 -29.66919 -27.90131 -26.21030 -25.27139 -23.61028 -22.75675 -21.13243 -20.14098 -19.80230 -19.68356 -19.39970 -18.50188 -17.63617 -17.13834 -17.11412 -16.92955 -16.71826 -16.09083 -15.78757 -15.68380 -15.67734 -15.41269 -15.23838 -14.98213 -14.96472 -14.89567 -14.78906 -14.55508 -14.21878 -13.65080 -13.43145 -13.38146 -13.18156 -13.03397 -12.83745 -12.47813 -12.28626 -12.02856 -11.94104 -11.80041 -11.66271 -11.29675 -11.18965 -10.64958 -10.48630 -9.07837 -8.53239 -6.27053 0.57330 0.82057 1.20780 1.31529 1.44264 1.48437 1.66900 2.22495 2.39911 2.55440 2.58658 2.85384 2.88836 2.96358 3.32479 3.47451 3.53036 3.77106 3.91859 3.99361 4.05844 4.14070 4.23652 4.35702 4.46872 4.65762 4.73682 4.79583 4.86383 4.90555 5.07212 5.11953 5.34093 5.68951 6.11185 6.16547 6.36799 6.90907 8.59013 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.003504 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.836975 B = 7988.590920 C = 8832.476344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.049 3.951 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.234 1.234 7 C -0.532 4.532 8 H 0.067 0.933 9 S -0.157 6.157 10 C -0.089 4.089 11 C 0.485 3.515 12 O -0.495 6.495 13 O -0.318 6.318 14 C 0.052 3.948 15 H 0.137 0.863 16 C -0.113 4.113 17 H 0.125 0.875 18 C -0.136 4.136 19 C -0.147 4.147 20 C 0.049 3.951 21 O -0.390 6.390 22 C 0.068 3.932 23 C 0.439 3.561 24 F -0.167 7.167 25 F -0.187 7.187 26 F -0.170 7.170 27 H 0.278 0.722 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.256 -17.323 -1.692 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.158 1.158 7 C -0.680 4.680 8 H 0.085 0.915 9 S 0.069 5.931 10 C -0.237 4.237 11 C 0.326 3.674 12 O -0.381 6.381 13 O -0.236 6.236 14 C -0.005 4.005 15 H 0.154 0.846 16 C -0.132 4.132 17 H 0.143 0.857 18 C -0.173 4.173 19 C -0.185 4.185 20 C -0.027 4.027 21 O -0.309 6.309 22 C -0.009 4.009 23 C 0.385 3.615 24 F -0.148 7.148 25 F -0.168 7.168 26 F -0.151 7.151 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.204 -16.108 -1.803 25.130 hybrid contribution -1.206 -0.065 0.708 1.400 sum 17.998 -16.173 -1.095 24.222 Atomic orbital electron populations 1.70011 1.07353 1.29146 1.48667 1.25524 0.95222 1.02205 0.92734 0.85915 0.80752 0.79660 0.80367 1.18434 1.18471 1.15803 1.22405 0.89756 0.96954 1.58839 0.91517 1.84684 1.07141 1.03558 1.97702 1.22948 0.90514 1.00963 1.09313 1.23155 0.91610 0.80816 0.71786 1.90711 1.58859 1.44059 1.44483 1.86735 1.22878 1.29872 1.84067 1.24005 0.80704 1.05044 0.90762 0.84582 1.22110 1.03532 0.90688 0.96860 0.85730 1.21963 1.01055 0.93691 1.00616 1.22153 1.03250 0.97680 0.95382 1.22847 0.95956 0.89305 0.94598 1.87953 1.67257 1.16803 1.58900 1.22561 1.01373 0.87454 0.89500 1.20950 0.76282 0.73737 0.90567 1.93209 1.31483 1.93258 1.96871 1.93263 1.94478 1.43889 1.85191 1.93159 1.79401 1.60819 1.81730 0.91253 0.84941 0.85576 0.90025 0.90779 0.90508 0.88958 0.87124 0.92763 0.92431 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.10 13.97 21.65 0.30 -53.80 16 2 C 0.05 2.78 5.50 84.86 0.47 3.24 16 3 Si 0.91 42.95 27.74 68.60 1.90 44.86 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.23 -10.91 6.74 99.48 0.67 -10.24 16 7 C -0.53 -29.55 10.04 67.95 0.68 -28.87 16 8 H 0.07 3.92 8.03 -2.91 -0.02 3.90 16 9 S -0.16 -7.39 18.55 -56.49 -1.05 -8.44 16 10 C -0.09 -3.14 6.27 71.24 0.45 -2.69 16 11 C 0.48 15.35 7.62 71.24 0.54 15.90 16 12 O -0.50 -18.17 14.25 21.97 0.31 -17.86 16 13 O -0.32 -7.90 8.32 -51.39 -0.43 -8.32 16 14 C 0.05 1.09 1.80 30.59 0.06 1.14 16 15 H 0.14 2.76 7.16 -2.39 -0.02 2.74 16 16 C -0.11 -1.80 2.13 -10.71 -0.02 -1.82 16 17 H 0.12 1.68 7.48 -2.38 -0.02 1.66 16 18 C -0.14 -2.09 4.52 30.71 0.14 -1.95 16 19 C -0.15 -1.74 6.14 30.69 0.19 -1.56 16 20 C 0.05 0.65 6.84 72.01 0.49 1.15 16 21 O -0.39 -6.98 10.77 -148.98 -1.60 -8.59 16 22 C 0.07 1.13 6.06 72.01 0.44 1.56 16 23 C 0.44 10.01 2.84 71.98 0.20 10.22 16 24 F -0.17 -3.37 16.47 44.97 0.74 -2.63 16 25 F -0.19 -5.43 16.11 44.97 0.72 -4.71 16 26 F -0.17 -3.84 14.16 44.97 0.64 -3.21 16 27 H 0.28 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.13 4.18 8.14 -2.39 -0.02 4.16 16 29 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.08 1.30 5.73 -2.38 -0.01 1.29 16 31 H 0.07 1.28 7.43 -2.39 -0.02 1.26 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 1.03 7.80 -2.39 -0.02 1.01 16 37 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -65.37 329.97 6.24 -59.13 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.07 Total: 7.25 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 3.63 Total: -3.69 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.30 Total: -53.80 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.72 Total: -34.77 kcal Atomic # 9 Polarization: -12.64 SS G_CDS: 2.10 Total: -10.54 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.90 Total: 44.86 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.05 Total: -8.44 kcal Total: -65.37 6.24 -59.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789655617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.754 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -315.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -308.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds