Wall clock time and date at job start Tue Mar 31 2020 15:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47250 * 346.70305 * 3 2 1 5 5 C 1.37105 * 119.99697 * 274.71573 * 4 3 2 6 6 H 1.07997 * 119.99674 * 183.18683 * 5 4 3 7 7 C 1.38949 * 119.99691 * 3.18055 * 5 4 3 8 8 N 1.31403 * 120.00329 * 27.83306 * 7 5 4 9 9 Si 1.86804 * 119.99705 * 207.83142 * 7 5 4 10 10 H 1.48500 * 109.47275 * 94.99275 * 9 7 5 11 11 H 1.48500 * 109.47182 * 214.99551 * 9 7 5 12 12 H 1.48501 * 109.47223 * 334.99818 * 9 7 5 13 13 C 1.34775 * 120.00443 * 94.98301 * 4 3 2 14 14 O 1.21285 * 120.00364 * 174.75702 * 13 4 3 15 15 C 1.50703 * 119.99814 * 354.76322 * 13 4 3 16 16 H 1.08998 * 109.47136 * 42.35945 * 15 13 4 17 17 O 1.42902 * 109.47247 * 162.36160 * 15 13 4 18 18 C 1.50697 * 109.46780 * 282.35946 * 15 13 4 19 19 C 1.38259 * 120.00335 * 289.94061 * 18 15 13 20 20 C 1.38209 * 120.00003 * 179.76588 * 19 18 15 21 21 C 1.38258 * 120.00177 * 0.51058 * 20 19 18 22 22 C 1.38219 * 119.99824 * 359.74312 * 21 20 19 23 23 C 1.50703 * 119.99902 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.47141 * 270.02238 * 23 22 21 25 25 F 1.39896 * 109.46860 * 30.02223 * 23 22 21 26 26 F 1.39897 * 109.46918 * 150.02262 * 23 22 21 27 27 C 1.38217 * 119.99710 * 110.21660 * 18 15 13 28 28 H 1.09000 * 109.47234 * 226.70135 * 3 2 1 29 29 H 1.09008 * 109.47243 * 106.69714 * 3 2 1 30 30 H 0.97006 * 119.99996 * 179.97438 * 8 7 5 31 31 H 0.96702 * 113.99927 * 59.99873 * 17 15 13 32 32 H 1.07998 * 119.99759 * 359.97438 * 19 18 15 33 33 H 1.08007 * 120.00139 * 180.22766 * 20 19 18 34 34 H 1.07998 * 120.00083 * 179.72018 * 21 20 19 35 35 H 1.08001 * 120.00203 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3433 0.3177 5 6 3.2336 -1.7317 1.6254 6 1 3.6424 -2.7033 1.8603 7 6 2.8462 -0.8751 2.6486 8 7 1.8965 0.0091 2.4411 9 14 3.6754 -0.9805 4.3192 10 1 4.7795 0.0103 4.3871 11 1 2.6824 -0.6888 5.3840 12 1 4.2238 -2.3466 4.5143 13 6 3.4176 -2.1961 -0.6755 14 8 3.9114 -3.2727 -0.4147 15 6 3.1626 -1.8118 -2.1102 16 1 3.4502 -0.7718 -2.2644 17 8 3.9326 -2.6519 -2.9725 18 6 1.6979 -1.9796 -2.4224 19 6 1.1485 -3.2458 -2.5015 20 6 -0.1959 -3.3995 -2.7830 21 6 -0.9891 -2.2873 -2.9960 22 6 -0.4388 -1.0215 -2.9220 23 6 -1.3033 0.1908 -3.1547 24 9 -1.2904 0.5187 -4.5146 25 9 -2.6145 -0.0879 -2.7546 26 9 -0.8074 1.2668 -2.4108 27 6 0.9049 -0.8677 -2.6352 28 1 2.9710 0.7056 0.7479 29 1 2.9712 0.2961 -0.9844 30 1 1.6258 0.6068 3.1556 31 1 3.7290 -3.5935 -2.8887 32 1 1.7691 -4.1148 -2.3400 33 1 -0.6259 -4.3885 -2.8412 34 1 -2.0387 -2.4075 -3.2204 35 1 1.3349 0.1214 -2.5774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795892945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:18 Heat of formation + Delta-G solvation = -156.884019 kcal Electronic energy + Delta-G solvation = -29086.690069 eV Core-core repulsion = 24443.103845 eV Total energy + Delta-G solvation = -4643.586224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.98120 -47.49854 -47.43003 -40.19537 -38.54178 -36.56741 -35.48395 -34.30484 -32.35139 -31.86599 -31.35889 -27.75053 -27.04418 -25.93325 -24.52105 -22.49883 -21.60327 -19.71072 -18.38220 -18.31815 -18.20388 -18.13634 -17.15007 -16.40110 -16.34331 -15.94367 -15.34095 -14.96720 -14.53547 -14.37404 -14.17908 -13.99020 -13.88018 -13.79528 -13.57955 -13.55615 -13.41373 -13.13520 -13.06676 -12.65363 -12.55968 -12.16167 -11.94204 -11.67806 -11.50217 -11.30429 -11.20177 -11.13021 -10.66979 -10.48936 -10.45383 -10.31588 -9.34581 -9.18175 -9.03230 -8.44788 -8.26807 -6.67696 -4.05627 1.01295 1.24798 2.80670 2.98506 3.16675 3.21026 3.33814 3.53776 3.66547 3.85790 3.98755 4.07583 4.17053 4.52886 4.59436 4.66075 4.70750 4.80766 4.86560 5.00141 5.14014 5.23609 5.34619 5.40584 5.48905 5.74349 5.84107 5.92516 6.16568 6.28705 6.41357 6.45519 6.76496 7.33597 7.61210 7.78479 8.12405 8.78000 8.84478 9.04369 9.52982 10.36298 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.005372 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.278615 B = 5210.942007 C = 6405.088590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.241 3.759 3 C 0.213 3.787 4 N -0.428 5.428 5 C -0.321 4.321 6 H 0.114 0.886 7 C 0.038 3.962 8 N -0.862 5.862 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.422 3.578 14 O -0.570 6.570 15 C 0.135 3.865 16 H 0.120 0.880 17 O -0.535 6.535 18 C -0.107 4.107 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.071 4.071 22 C -0.168 4.168 23 C 0.510 3.490 24 F -0.183 7.183 25 F -0.178 7.178 26 F -0.169 7.169 27 C -0.054 4.054 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.276 0.724 31 H 0.380 0.620 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 0.627 -10.770 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.077 4.077 3 C 0.086 3.914 4 N -0.148 5.148 5 C -0.447 4.447 6 H 0.132 0.868 7 C -0.167 4.167 8 N -0.500 5.500 9 Si 0.750 3.250 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.210 3.790 14 O -0.454 6.454 15 C 0.072 3.928 16 H 0.137 0.863 17 O -0.340 6.340 18 C -0.108 4.108 19 C -0.089 4.089 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.170 4.170 23 C 0.456 3.544 24 F -0.165 7.165 25 F -0.159 7.159 26 F -0.150 7.150 27 C -0.072 4.072 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.000 0.839 -10.697 11.451 hybrid contribution 0.108 -0.077 1.321 1.328 sum -3.892 0.762 -9.375 10.180 Atomic orbital electron populations 1.80911 1.13178 1.07446 1.11847 1.28850 0.95036 0.93442 0.90411 1.19001 0.82529 0.88534 1.01323 1.43731 1.54422 1.10262 1.06352 1.19771 1.41472 1.04194 0.79293 0.86813 1.25244 0.94825 0.96216 1.00411 1.69908 1.22753 1.22135 1.35222 0.85942 0.79177 0.79270 0.80625 1.19975 1.21078 1.19151 1.20411 0.85991 0.86055 0.86531 1.90550 1.48299 1.23302 1.83236 1.20679 0.86151 0.96471 0.89471 0.86284 1.86545 1.64110 1.21812 1.61559 1.20243 0.96375 0.93489 1.00659 1.21155 0.95407 0.97094 0.95201 1.21046 0.93546 0.98619 1.00419 1.20879 1.00152 0.91034 0.96810 1.19778 0.94804 0.92754 1.09633 1.18242 0.78623 0.83805 0.73707 1.93195 1.96491 1.93622 1.33175 1.93169 1.38544 1.93639 1.90581 1.93227 1.87237 1.57898 1.76627 1.20717 0.91976 0.99187 0.95324 0.85266 0.90307 0.91280 0.77077 0.84946 0.84847 0.85017 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.13 16.68 42.15 0.70 -9.42 16 2 C 0.24 5.04 10.03 -20.76 -0.21 4.83 16 3 C 0.21 4.07 4.78 -6.83 -0.03 4.03 16 4 N -0.43 -9.46 2.60 -117.93 -0.31 -9.76 16 5 C -0.32 -7.95 9.42 -14.93 -0.14 -8.09 16 6 H 0.11 3.02 7.30 -52.49 -0.38 2.64 16 7 C 0.04 0.90 4.91 -17.47 -0.09 0.82 16 8 N -0.86 -20.65 9.02 55.50 0.50 -20.15 16 9 Si 0.92 19.00 29.63 -169.99 -5.04 13.96 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.42 8.92 6.73 -10.98 -0.07 8.84 16 14 O -0.57 -13.81 15.90 -13.71 -0.22 -14.02 16 15 C 0.14 2.24 2.90 -29.03 -0.08 2.15 16 16 H 0.12 1.71 6.04 -51.93 -0.31 1.40 16 17 O -0.53 -8.52 13.04 -54.49 -0.71 -9.23 16 18 C -0.11 -1.69 4.44 -104.62 -0.47 -2.15 16 19 C -0.07 -1.04 9.14 -39.58 -0.36 -1.40 16 20 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 21 C -0.07 -0.98 9.40 -39.58 -0.37 -1.35 16 22 C -0.17 -2.59 5.07 -104.62 -0.53 -3.12 16 23 C 0.51 7.84 3.36 36.01 0.12 7.96 16 24 F -0.18 -2.61 17.30 2.25 0.04 -2.57 16 25 F -0.18 -2.79 16.46 2.25 0.04 -2.75 16 26 F -0.17 -2.82 15.61 2.25 0.04 -2.78 16 27 C -0.05 -0.84 5.70 -39.58 -0.23 -1.06 16 28 H 0.13 2.54 6.36 -51.93 -0.33 2.21 16 29 H 0.08 1.15 5.42 -51.92 -0.28 0.87 16 30 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 31 H 0.38 5.30 7.48 45.56 0.34 5.64 16 32 H 0.13 1.79 7.24 -52.49 -0.38 1.41 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.13 1.55 7.60 -52.49 -0.40 1.15 16 35 H 0.13 1.90 6.60 -52.49 -0.35 1.55 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -29.73 313.91 -4.73 -34.47 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -1.65 Total: 8.04 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -2.86 Total: 9.50 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.90 Total: -39.34 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.93 Total: -23.25 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.11 Total: -8.10 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.04 Total: 13.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.73 -4.73 -34.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795892945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.418 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds