Wall clock time and date at job start Tue Mar 31 2020 15:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47250 * 346.70305 * 3 2 1 5 5 C 1.37105 * 119.99697 * 274.71573 * 4 3 2 6 6 H 1.07997 * 119.99674 * 183.18683 * 5 4 3 7 7 C 1.38949 * 119.99691 * 3.18055 * 5 4 3 8 8 N 1.31403 * 120.00329 * 27.83306 * 7 5 4 9 9 Si 1.86804 * 119.99705 * 207.83142 * 7 5 4 10 10 H 1.48500 * 109.47275 * 94.99275 * 9 7 5 11 11 H 1.48500 * 109.47182 * 214.99551 * 9 7 5 12 12 H 1.48501 * 109.47223 * 334.99818 * 9 7 5 13 13 C 1.34775 * 120.00443 * 94.98301 * 4 3 2 14 14 O 1.21285 * 120.00364 * 174.75702 * 13 4 3 15 15 C 1.50703 * 119.99814 * 354.76322 * 13 4 3 16 16 H 1.08998 * 109.47136 * 42.35945 * 15 13 4 17 17 O 1.42902 * 109.47247 * 162.36160 * 15 13 4 18 18 C 1.50697 * 109.46780 * 282.35946 * 15 13 4 19 19 C 1.38259 * 120.00335 * 289.94061 * 18 15 13 20 20 C 1.38209 * 120.00003 * 179.76588 * 19 18 15 21 21 C 1.38258 * 120.00177 * 0.51058 * 20 19 18 22 22 C 1.38219 * 119.99824 * 359.74312 * 21 20 19 23 23 C 1.50703 * 119.99902 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.47141 * 270.02238 * 23 22 21 25 25 F 1.39896 * 109.46860 * 30.02223 * 23 22 21 26 26 F 1.39897 * 109.46918 * 150.02262 * 23 22 21 27 27 C 1.38217 * 119.99710 * 110.21660 * 18 15 13 28 28 H 1.09000 * 109.47234 * 226.70135 * 3 2 1 29 29 H 1.09008 * 109.47243 * 106.69714 * 3 2 1 30 30 H 0.97006 * 119.99996 * 179.97438 * 8 7 5 31 31 H 0.96702 * 113.99927 * 59.99873 * 17 15 13 32 32 H 1.07998 * 119.99759 * 359.97438 * 19 18 15 33 33 H 1.08007 * 120.00139 * 180.22766 * 20 19 18 34 34 H 1.07998 * 120.00083 * 179.72018 * 21 20 19 35 35 H 1.08001 * 120.00203 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3433 0.3177 5 6 3.2336 -1.7317 1.6254 6 1 3.6424 -2.7033 1.8603 7 6 2.8462 -0.8751 2.6486 8 7 1.8965 0.0091 2.4411 9 14 3.6754 -0.9805 4.3192 10 1 4.7795 0.0103 4.3871 11 1 2.6824 -0.6888 5.3840 12 1 4.2238 -2.3466 4.5143 13 6 3.4176 -2.1961 -0.6755 14 8 3.9114 -3.2727 -0.4147 15 6 3.1626 -1.8118 -2.1102 16 1 3.4502 -0.7718 -2.2644 17 8 3.9326 -2.6519 -2.9725 18 6 1.6979 -1.9796 -2.4224 19 6 1.1485 -3.2458 -2.5015 20 6 -0.1959 -3.3995 -2.7830 21 6 -0.9891 -2.2873 -2.9960 22 6 -0.4388 -1.0215 -2.9220 23 6 -1.3033 0.1908 -3.1547 24 9 -1.2904 0.5187 -4.5146 25 9 -2.6145 -0.0879 -2.7546 26 9 -0.8074 1.2668 -2.4108 27 6 0.9049 -0.8677 -2.6352 28 1 2.9710 0.7056 0.7479 29 1 2.9712 0.2961 -0.9844 30 1 1.6258 0.6068 3.1556 31 1 3.7290 -3.5935 -2.8887 32 1 1.7691 -4.1148 -2.3400 33 1 -0.6259 -4.3885 -2.8412 34 1 -2.0387 -2.4075 -3.2204 35 1 1.3349 0.1214 -2.5774 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795892945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:17 Heat of formation + Delta-G solvation = -174.557563 kcal Electronic energy + Delta-G solvation = -29087.456452 eV Core-core repulsion = 24443.103845 eV Total energy + Delta-G solvation = -4644.352606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.17964 -48.69361 -48.64217 -41.55693 -39.93223 -38.05621 -37.01706 -36.01837 -33.98775 -33.07100 -32.61200 -29.35604 -28.48230 -27.09683 -26.16463 -23.63016 -22.86310 -21.22522 -19.90257 -19.54457 -19.49984 -19.41141 -18.64895 -18.00296 -17.59524 -17.24827 -16.62772 -16.51133 -16.00966 -15.56283 -15.56038 -15.34873 -15.14430 -15.07646 -14.87833 -14.79365 -14.75606 -14.62586 -14.51549 -13.96651 -13.78558 -13.71486 -13.35968 -13.22817 -13.00864 -12.91989 -12.67851 -12.30597 -12.26423 -12.16198 -12.11064 -11.71945 -11.09749 -10.54492 -10.19130 -10.06599 -9.83557 -8.47968 -5.92177 -0.12643 0.12747 1.33738 1.48026 1.57449 1.62421 1.76356 2.03846 2.29820 2.39495 2.44564 2.68202 2.89457 2.95405 3.08260 3.40602 3.42237 3.53331 3.68136 3.74425 3.85016 3.94032 4.07916 4.16191 4.38930 4.48516 4.62585 4.76178 4.89331 5.05598 5.18556 5.29494 5.46174 5.67803 5.89999 6.31747 6.54917 7.05335 7.15742 7.30040 7.81564 8.53601 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.005372 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.278615 B = 5210.942007 C = 6405.088590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.251 3.749 3 C 0.212 3.788 4 N -0.439 5.439 5 C -0.349 4.349 6 H 0.085 0.915 7 C 0.016 3.984 8 N -0.874 5.874 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.421 3.579 14 O -0.608 6.608 15 C 0.149 3.851 16 H 0.144 0.856 17 O -0.536 6.536 18 C -0.120 4.120 19 C -0.082 4.082 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.183 4.183 23 C 0.512 3.488 24 F -0.177 7.177 25 F -0.181 7.181 26 F -0.178 7.178 27 C -0.062 4.062 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.277 0.723 31 H 0.388 0.612 32 H 0.139 0.861 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 0.903 -11.541 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.067 4.067 3 C 0.086 3.914 4 N -0.159 5.159 5 C -0.476 4.476 6 H 0.103 0.897 7 C -0.188 4.188 8 N -0.512 5.512 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.210 3.790 14 O -0.494 6.494 15 C 0.086 3.914 16 H 0.162 0.838 17 O -0.342 6.342 18 C -0.121 4.121 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.091 4.091 22 C -0.184 4.184 23 C 0.458 3.542 24 F -0.158 7.158 25 F -0.163 7.163 26 F -0.160 7.160 27 C -0.080 4.080 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.238 0.762 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.195 1.132 -11.485 12.280 hybrid contribution 0.131 -0.231 1.514 1.537 sum -4.065 0.900 -9.971 10.805 Atomic orbital electron populations 1.80906 1.14026 1.08251 1.12879 1.29159 0.95369 0.92639 0.89543 1.19238 0.81491 0.86980 1.03722 1.43822 1.54794 1.11511 1.05765 1.19582 1.42964 1.03841 0.81208 0.89697 1.25757 0.94716 0.95757 1.02610 1.69974 1.22894 1.22365 1.35929 0.85140 0.78429 0.78795 0.77305 1.18654 1.21213 1.20195 1.21295 0.84186 0.85243 0.88244 1.90520 1.49560 1.24936 1.84399 1.20590 0.87039 0.97632 0.86157 0.83842 1.86532 1.64191 1.22530 1.60979 1.20185 0.95791 0.94159 1.01968 1.21417 0.96397 0.97068 0.95152 1.21407 0.92849 0.99979 0.98943 1.21228 1.01314 0.90661 0.95888 1.19914 0.94868 0.93260 1.10348 1.18261 0.78481 0.83644 0.73825 1.93205 1.96453 1.93582 1.32598 1.93159 1.38786 1.93637 1.90669 1.93204 1.87366 1.58424 1.76967 1.20822 0.92193 0.99503 0.95472 0.85781 0.85640 0.91218 0.76164 0.84286 0.81716 0.83004 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.99 16.68 20.01 0.33 -20.65 16 2 C 0.25 10.21 10.03 89.44 0.90 11.10 16 3 C 0.21 7.79 4.78 84.57 0.40 8.20 16 4 N -0.44 -19.24 2.60 -645.41 -1.68 -20.91 16 5 C -0.35 -17.48 9.42 84.04 0.79 -16.69 16 6 H 0.09 4.67 7.30 -2.91 -0.02 4.65 16 7 C 0.02 0.74 4.91 84.93 0.42 1.15 16 8 N -0.87 -41.37 9.02 21.66 0.20 -41.17 16 9 Si 0.98 38.85 29.63 68.60 2.03 40.88 16 10 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 11 H -0.29 -11.36 7.11 99.48 0.71 -10.66 16 12 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 13 C 0.42 17.54 6.73 87.66 0.59 18.13 16 14 O -0.61 -29.70 15.90 15.37 0.24 -29.46 16 15 C 0.15 4.65 2.90 29.10 0.08 4.74 16 16 H 0.14 3.71 6.04 -2.39 -0.01 3.70 16 17 O -0.54 -16.17 13.04 -130.56 -1.70 -17.87 16 18 C -0.12 -3.59 4.44 -19.87 -0.09 -3.68 16 19 C -0.08 -2.28 9.14 22.27 0.20 -2.07 16 20 C -0.11 -2.73 10.05 22.27 0.22 -2.51 16 21 C -0.07 -1.86 9.40 22.27 0.21 -1.65 16 22 C -0.18 -5.30 5.07 -19.86 -0.10 -5.40 16 23 C 0.51 14.99 3.36 71.24 0.24 15.23 16 24 F -0.18 -4.75 17.30 44.97 0.78 -3.98 16 25 F -0.18 -5.43 16.46 44.97 0.74 -4.69 16 26 F -0.18 -5.76 15.61 44.97 0.70 -5.06 16 27 C -0.06 -1.81 5.70 22.27 0.13 -1.68 16 28 H 0.12 4.73 6.36 -2.39 -0.02 4.72 16 29 H 0.13 3.34 5.42 -2.38 -0.01 3.33 16 30 H 0.28 12.68 8.31 -92.70 -0.77 11.91 16 31 H 0.39 10.35 7.48 -74.06 -0.55 9.79 16 32 H 0.14 3.57 7.24 -2.91 -0.02 3.55 16 33 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.15 3.17 7.60 -2.91 -0.02 3.15 16 35 H 0.14 3.74 6.60 -2.91 -0.02 3.72 16 Total: -1.00 -63.44 313.91 6.30 -57.14 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.65 Total: 20.89 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 4.00 Total: 24.88 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.15 Total: -82.74 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.46 Total: -47.33 kcal Atomic # 9 Polarization: -15.94 SS G_CDS: 2.22 Total: -13.72 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -63.44 6.30 -57.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795892945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.415 kcal (2) G-P(sol) polarization free energy of solvation -63.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds