Wall clock time and date at job start Tue Mar 31 2020 14:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47323 * 59.63158 * 3 2 1 5 5 C 1.36876 * 120.00120 * 83.14144 * 4 3 2 6 6 H 1.08000 * 119.99631 * 167.21170 * 5 4 3 7 7 C 1.39046 * 119.99955 * 347.21367 * 5 4 3 8 8 N 1.31359 * 119.99927 * 0.14743 * 7 5 4 9 9 Si 1.86798 * 119.99701 * 180.14612 * 7 5 4 10 10 H 1.48498 * 109.47134 * 90.00101 * 9 7 5 11 11 H 1.48501 * 109.46961 * 209.99866 * 9 7 5 12 12 H 1.48498 * 109.47445 * 329.99745 * 9 7 5 13 13 C 1.34775 * 120.00128 * 263.14283 * 4 3 2 14 14 O 1.21583 * 120.00466 * 185.82315 * 13 4 3 15 15 C 1.47744 * 119.99766 * 5.82582 * 13 4 3 16 16 C 1.39682 * 120.12223 * 51.75062 * 15 13 4 17 17 C 1.37951 * 119.95799 * 180.29629 * 16 15 13 18 18 C 1.38298 * 120.22014 * 359.43295 * 17 16 15 19 19 C 1.38855 * 120.24564 * 0.25199 * 18 17 16 20 20 O 1.35895 * 119.98165 * 180.02562 * 19 18 17 21 21 C 1.35544 * 118.00288 * 70.36049 * 20 19 18 22 22 N 1.29527 * 124.94067 * 184.20874 * 21 20 19 23 23 C 1.32044 * 116.92346 * 179.97438 * 22 21 20 24 24 C 1.33400 * 114.56428 * 0.02562 * 23 22 21 25 25 S 1.70972 * 124.93713 * 3.90505 * 21 20 19 26 26 C 1.38503 * 120.03198 * 0.04575 * 19 18 17 27 27 H 4.40640 * 5.51475 * 180.02562 * 4 1 2 28 28 H 1.08992 * 109.47358 * 299.62609 * 3 2 1 29 29 H 1.09003 * 109.46927 * 179.62857 * 3 2 1 30 30 H 0.96999 * 119.99753 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.02126 * 0.02562 * 16 15 13 32 32 H 1.08010 * 119.89032 * 179.70762 * 17 16 15 33 33 H 1.08000 * 119.87795 * 180.27553 * 18 17 16 34 34 H 1.08000 * 122.72038 * 180.02562 * 23 22 21 35 35 H 1.08001 * 125.97450 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.10543 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6974 -1.1917 5 6 3.2291 -0.0320 -2.3841 6 1 3.7751 -0.4714 -3.2058 7 6 2.6221 1.2095 -2.5374 8 7 1.9604 1.7451 -1.5370 9 14 2.7475 2.1157 -4.1661 10 1 1.6087 1.7285 -5.0369 11 1 2.7085 3.5800 -3.9221 12 1 4.0250 1.7590 -4.8339 13 6 3.4913 -1.9948 -1.1139 14 8 3.9956 -2.5453 -2.0735 15 6 3.2694 -2.7481 0.1375 16 6 2.0096 -2.7494 0.7409 17 6 1.8077 -3.4490 1.9126 18 6 2.8460 -4.1596 2.4868 19 6 4.1002 -4.1698 1.8909 20 8 5.1164 -4.8703 2.4595 21 6 5.0546 -6.2238 2.4233 22 7 5.9053 -7.0206 2.9883 23 6 5.6920 -8.3166 2.8524 24 6 4.6095 -8.6286 2.1380 25 16 3.8384 -7.1276 1.6315 26 6 4.3160 -3.4660 0.7177 27 1 -1.0499 0.0000 -0.0003 28 1 3.0096 -0.5071 0.8932 29 1 3.0089 1.0285 -0.0067 30 1 1.5373 2.6114 -1.6438 31 1 1.1953 -2.1994 0.2928 32 1 0.8344 -3.4453 2.3808 33 1 2.6806 -4.7090 3.4018 34 1 6.3413 -9.0636 3.2847 35 1 4.2639 -9.6267 1.9130 36 1 5.2911 -3.4727 0.2535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798805564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:31 Heat of formation + Delta-G solvation = 110.203848 kcal Electronic energy + Delta-G solvation = -24359.636337 eV Core-core repulsion = 20712.241524 eV Total energy + Delta-G solvation = -3647.394814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81800 -39.64695 -38.83875 -37.09541 -35.40460 -32.23740 -31.49299 -30.98405 -30.62134 -29.45321 -26.63670 -25.38093 -25.17020 -23.10631 -22.74481 -20.95296 -20.31748 -18.86946 -18.05519 -17.20655 -16.67352 -16.55710 -16.37179 -16.18067 -15.58755 -14.95786 -14.75668 -14.68909 -14.23879 -13.92042 -13.73478 -13.15536 -13.03469 -12.69169 -12.64084 -12.47061 -12.18662 -11.67706 -11.56587 -11.34597 -11.18886 -11.11393 -10.61271 -10.45676 -9.84930 -9.66934 -9.57406 -9.35548 -8.98347 -8.94792 -8.85258 -8.60370 -8.52448 -8.09828 -6.41744 -4.02628 0.58885 0.75304 1.09514 1.22910 1.48154 2.52724 2.66478 3.06691 3.16862 3.21505 3.44456 3.71600 3.88223 4.01906 4.08693 4.54782 4.69169 4.87388 4.96055 4.99010 5.04000 5.28519 5.29184 5.37184 5.44006 5.53776 5.61051 5.90965 5.96826 6.18125 6.23987 6.37644 6.51956 6.56803 6.87889 6.98716 7.03001 7.39441 7.65787 7.83400 8.26173 8.75217 8.94736 9.15778 9.68289 10.49887 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.003104 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.210320 B = 9018.609343 C = 9584.225628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.088 4.088 3 C 0.225 3.775 4 N -0.426 5.426 5 C -0.304 4.304 6 H 0.109 0.891 7 C 0.030 3.970 8 N -0.871 5.871 9 Si 0.936 3.064 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.475 3.525 14 O -0.577 6.577 15 C -0.075 4.075 16 C -0.081 4.081 17 C -0.106 4.106 18 C -0.124 4.124 19 C 0.046 3.954 20 O -0.205 6.205 21 C 0.244 3.756 22 N -0.501 5.501 23 C 0.071 3.929 24 C -0.283 4.283 25 S 0.109 5.891 26 C -0.068 4.068 27 H 0.198 0.802 28 H 0.057 0.943 29 H 0.129 0.871 30 H 0.271 0.729 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.183 0.817 35 H 0.180 0.820 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 -12.281 9.950 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.090 4.090 3 C 0.103 3.897 4 N -0.142 5.142 5 C -0.431 4.431 6 H 0.127 0.873 7 C -0.173 4.173 8 N -0.510 5.510 9 Si 0.762 3.238 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.264 3.736 14 O -0.462 6.462 15 C -0.078 4.078 16 C -0.100 4.100 17 C -0.124 4.124 18 C -0.143 4.143 19 C 0.003 3.997 20 O -0.111 6.111 21 C -0.070 4.070 22 N -0.230 5.230 23 C -0.079 4.079 24 C -0.422 4.422 25 S 0.358 5.642 26 C -0.088 4.088 27 H 0.215 0.785 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.199 0.801 35 H 0.198 0.802 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.470 -11.625 9.262 14.936 hybrid contribution 0.132 -0.034 -0.300 0.329 sum -1.338 -11.659 8.962 14.766 Atomic orbital electron populations 1.24227 0.95327 1.06238 1.04197 1.22956 0.94088 0.95222 0.96762 1.18724 0.84563 1.00470 0.85972 1.43669 1.53789 1.07430 1.09314 1.19848 1.31947 1.00685 0.90615 0.87281 1.25382 0.95274 0.97246 0.99408 1.69894 1.32884 1.18017 1.30173 0.85758 0.79083 0.78029 0.80903 1.20247 1.20727 1.19256 1.17758 0.86552 0.82149 0.87182 1.90651 1.48684 1.68463 1.38409 1.20186 0.93392 0.98265 0.95984 1.21940 0.97283 0.96358 0.94386 1.20953 0.98729 0.97000 0.95762 1.21421 0.91904 1.00845 1.00151 1.18624 0.86986 0.98985 0.95141 1.84209 1.43463 1.10708 1.72746 1.25509 0.95170 0.88709 0.97657 1.65978 1.28817 1.03055 1.25102 1.21530 0.97091 0.90140 0.99116 1.26802 1.02792 1.02368 1.10248 1.84734 1.28415 0.98624 1.52432 1.21200 1.00195 0.96013 0.91365 0.78472 0.92459 0.85350 0.91713 0.83774 0.84631 0.85169 0.80061 0.80233 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.38 18.75 29.55 0.55 -4.83 16 2 C -0.09 -1.85 8.59 -37.12 -0.32 -2.16 16 3 C 0.23 4.83 4.77 -6.83 -0.03 4.80 16 4 N -0.43 -10.34 2.60 -119.05 -0.31 -10.65 16 5 C -0.30 -7.98 9.47 -15.00 -0.14 -8.12 16 6 H 0.11 3.01 7.21 -52.49 -0.38 2.63 16 7 C 0.03 0.74 5.36 -17.45 -0.09 0.64 16 8 N -0.87 -21.20 8.00 55.50 0.44 -20.75 16 9 Si 0.94 19.85 29.55 -169.99 -5.02 14.82 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.48 11.29 7.12 -12.38 -0.09 11.20 16 14 O -0.58 -15.65 16.66 5.29 0.09 -15.56 16 15 C -0.07 -1.42 4.55 -104.99 -0.48 -1.90 16 16 C -0.08 -1.33 7.83 -39.15 -0.31 -1.64 16 17 C -0.11 -1.39 10.02 -39.66 -0.40 -1.79 16 18 C -0.12 -1.62 9.07 -39.33 -0.36 -1.98 16 19 C 0.05 0.70 5.13 -39.26 -0.20 0.50 16 20 O -0.21 -3.27 10.05 -2.51 -0.03 -3.29 16 21 C 0.24 3.57 8.15 51.79 0.42 4.00 16 22 N -0.50 -7.22 10.59 -16.00 -0.17 -7.39 16 23 C 0.07 0.76 11.34 -19.15 -0.22 0.54 16 24 C -0.28 -2.72 11.35 29.04 0.33 -2.39 16 25 S 0.11 1.32 21.52 -107.50 -2.31 -1.00 16 26 C -0.07 -1.18 9.69 -39.00 -0.38 -1.56 16 27 H 0.20 3.07 7.80 -54.10 -0.42 2.65 16 28 H 0.06 1.09 6.22 -51.93 -0.32 0.76 16 29 H 0.13 2.94 6.26 -51.93 -0.33 2.61 16 30 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 31 H 0.14 2.52 5.14 -52.49 -0.27 2.25 16 32 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -30.30 332.71 -6.97 -37.27 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.97 Total: 6.24 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.70 Total: -4.69 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.04 Total: -38.79 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.06 Total: -18.86 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.31 Total: -1.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.30 -6.97 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.469 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds