Wall clock time and date at job start Tue Mar 31 2020 14:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47323 * 59.63158 * 3 2 1 5 5 C 1.36876 * 120.00120 * 83.14144 * 4 3 2 6 6 H 1.08000 * 119.99631 * 167.21170 * 5 4 3 7 7 C 1.39046 * 119.99955 * 347.21367 * 5 4 3 8 8 N 1.31359 * 119.99927 * 0.14743 * 7 5 4 9 9 Si 1.86798 * 119.99701 * 180.14612 * 7 5 4 10 10 H 1.48498 * 109.47134 * 90.00101 * 9 7 5 11 11 H 1.48501 * 109.46961 * 209.99866 * 9 7 5 12 12 H 1.48498 * 109.47445 * 329.99745 * 9 7 5 13 13 C 1.34775 * 120.00128 * 263.14283 * 4 3 2 14 14 O 1.21583 * 120.00466 * 185.82315 * 13 4 3 15 15 C 1.47744 * 119.99766 * 5.82582 * 13 4 3 16 16 C 1.39682 * 120.12223 * 51.75062 * 15 13 4 17 17 C 1.37951 * 119.95799 * 180.29629 * 16 15 13 18 18 C 1.38298 * 120.22014 * 359.43295 * 17 16 15 19 19 C 1.38855 * 120.24564 * 0.25199 * 18 17 16 20 20 O 1.35895 * 119.98165 * 180.02562 * 19 18 17 21 21 C 1.35544 * 118.00288 * 70.36049 * 20 19 18 22 22 N 1.29527 * 124.94067 * 184.20874 * 21 20 19 23 23 C 1.32044 * 116.92346 * 179.97438 * 22 21 20 24 24 C 1.33400 * 114.56428 * 0.02562 * 23 22 21 25 25 S 1.70972 * 124.93713 * 3.90505 * 21 20 19 26 26 C 1.38503 * 120.03198 * 0.04575 * 19 18 17 27 27 H 4.40640 * 5.51475 * 180.02562 * 4 1 2 28 28 H 1.08992 * 109.47358 * 299.62609 * 3 2 1 29 29 H 1.09003 * 109.46927 * 179.62857 * 3 2 1 30 30 H 0.96999 * 119.99753 * 179.97438 * 8 7 5 31 31 H 1.08000 * 120.02126 * 0.02562 * 16 15 13 32 32 H 1.08010 * 119.89032 * 179.70762 * 17 16 15 33 33 H 1.08000 * 119.87795 * 180.27553 * 18 17 16 34 34 H 1.08000 * 122.72038 * 180.02562 * 23 22 21 35 35 H 1.08001 * 125.97450 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.10543 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6974 -1.1917 5 6 3.2291 -0.0320 -2.3841 6 1 3.7751 -0.4714 -3.2058 7 6 2.6221 1.2095 -2.5374 8 7 1.9604 1.7451 -1.5370 9 14 2.7475 2.1157 -4.1661 10 1 1.6087 1.7285 -5.0369 11 1 2.7085 3.5800 -3.9221 12 1 4.0250 1.7590 -4.8339 13 6 3.4913 -1.9948 -1.1139 14 8 3.9956 -2.5453 -2.0735 15 6 3.2694 -2.7481 0.1375 16 6 2.0096 -2.7494 0.7409 17 6 1.8077 -3.4490 1.9126 18 6 2.8460 -4.1596 2.4868 19 6 4.1002 -4.1698 1.8909 20 8 5.1164 -4.8703 2.4595 21 6 5.0546 -6.2238 2.4233 22 7 5.9053 -7.0206 2.9883 23 6 5.6920 -8.3166 2.8524 24 6 4.6095 -8.6286 2.1380 25 16 3.8384 -7.1276 1.6315 26 6 4.3160 -3.4660 0.7177 27 1 -1.0499 0.0000 -0.0003 28 1 3.0096 -0.5071 0.8932 29 1 3.0089 1.0285 -0.0067 30 1 1.5373 2.6114 -1.6438 31 1 1.1953 -2.1994 0.2928 32 1 0.8344 -3.4453 2.3808 33 1 2.6806 -4.7090 3.4018 34 1 6.3413 -9.0636 3.2847 35 1 4.2639 -9.6267 1.9130 36 1 5.2911 -3.4727 0.2535 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:30 Heat of formation + Delta-G solvation = 90.902293 kcal Electronic energy + Delta-G solvation = -24360.473315 eV Core-core repulsion = 20712.241524 eV Total energy + Delta-G solvation = -3648.231792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98503 -40.98345 -40.12446 -38.41857 -37.26509 -34.00673 -33.18553 -32.28046 -31.78312 -30.49086 -28.37807 -26.93710 -26.32731 -24.56340 -23.92060 -22.03482 -21.52827 -20.25646 -19.80173 -18.46989 -18.29330 -17.74264 -17.62452 -17.51854 -16.86866 -16.38329 -16.07811 -15.96409 -15.76090 -15.35634 -15.00354 -14.64222 -14.35242 -14.17194 -14.04500 -13.82044 -13.50085 -13.22421 -12.93939 -12.79114 -12.54814 -12.48049 -12.37378 -12.15966 -11.45463 -10.99127 -10.83817 -10.64778 -10.52186 -10.49384 -10.10121 -10.03508 -9.95434 -9.56480 -8.29667 -6.00473 -0.41477 -0.27008 -0.06524 0.08349 0.59787 1.31375 1.40803 1.47041 1.52077 1.77416 1.88447 2.06488 2.31038 2.45616 2.51864 3.05344 3.05480 3.62309 3.73307 3.78573 3.91923 4.04687 4.08813 4.25107 4.33517 4.41573 4.50459 4.60941 4.72044 5.01748 5.10169 5.12858 5.17196 5.29032 5.37850 5.39670 5.49484 5.86182 5.94614 6.36979 6.71541 7.03370 7.18583 7.29542 7.82530 8.58488 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.003104 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.210320 B = 9018.609343 C = 9584.225628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.129 4.129 3 C 0.233 3.767 4 N -0.434 5.434 5 C -0.346 4.346 6 H 0.080 0.920 7 C 0.006 3.994 8 N -0.870 5.870 9 Si 0.993 3.007 10 H -0.275 1.275 11 H -0.267 1.267 12 H -0.275 1.275 13 C 0.466 3.534 14 O -0.628 6.628 15 C -0.095 4.095 16 C -0.084 4.084 17 C -0.084 4.084 18 C -0.105 4.105 19 C 0.053 3.947 20 O -0.226 6.226 21 C 0.210 3.790 22 N -0.525 5.525 23 C 0.053 3.947 24 C -0.256 4.256 25 S 0.111 5.889 26 C -0.082 4.082 27 H 0.234 0.766 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.275 0.725 31 H 0.136 0.864 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.216 0.784 35 H 0.219 0.781 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -13.787 11.957 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.131 4.131 3 C 0.111 3.889 4 N -0.150 5.150 5 C -0.474 4.474 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.508 5.508 9 Si 0.816 3.184 10 H -0.201 1.201 11 H -0.191 1.191 12 H -0.200 1.200 13 C 0.256 3.744 14 O -0.517 6.517 15 C -0.098 4.098 16 C -0.103 4.103 17 C -0.101 4.101 18 C -0.124 4.124 19 C 0.009 3.991 20 O -0.132 6.132 21 C -0.104 4.104 22 N -0.254 5.254 23 C -0.094 4.094 24 C -0.394 4.394 25 S 0.359 5.641 26 C -0.102 4.102 27 H 0.251 0.749 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.198 0.802 33 H 0.181 0.819 34 H 0.232 0.768 35 H 0.236 0.764 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.737 -13.120 11.319 17.727 hybrid contribution 0.831 0.274 -0.834 1.208 sum -2.907 -12.847 10.485 16.835 Atomic orbital electron populations 1.25052 0.96126 1.04110 1.02041 1.22971 0.94340 0.97121 0.98673 1.18590 0.85579 0.99177 0.85572 1.43829 1.53781 1.07788 1.09590 1.19734 1.34120 1.02193 0.91330 0.90237 1.26006 0.94425 0.97024 1.02241 1.70025 1.31945 1.17968 1.30821 0.84934 0.78531 0.77485 0.77403 1.20104 1.19103 1.19975 1.18517 0.85277 0.82162 0.88425 1.90583 1.50725 1.69574 1.40799 1.19751 0.95314 0.99660 0.95116 1.21884 0.95584 0.97201 0.95588 1.21339 1.00453 0.94527 0.93802 1.21780 0.90446 0.99653 1.00479 1.18601 0.87872 0.98395 0.94194 1.84127 1.44111 1.12006 1.72994 1.25555 0.96888 0.88189 0.99724 1.65970 1.29385 1.04678 1.25395 1.22079 0.98218 0.89326 0.99800 1.27289 1.01390 1.02820 1.07896 1.84690 1.27727 0.99771 1.51919 1.21029 0.99243 0.97173 0.92746 0.74928 0.90517 0.87364 0.91360 0.84634 0.80182 0.81892 0.76771 0.76420 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.21 18.75 74.32 1.39 -7.82 16 2 C -0.13 -5.35 8.59 31.12 0.27 -5.08 16 3 C 0.23 10.28 4.77 84.57 0.40 10.68 16 4 N -0.43 -22.31 2.60 -648.84 -1.69 -24.00 16 5 C -0.35 -19.27 9.47 84.10 0.80 -18.47 16 6 H 0.08 4.77 7.21 -2.91 -0.02 4.75 16 7 C 0.01 0.30 5.36 84.96 0.46 0.76 16 8 N -0.87 -42.57 8.00 21.68 0.17 -42.40 16 9 Si 0.99 41.33 29.55 68.60 2.03 43.36 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.47 23.69 7.12 86.76 0.62 24.30 16 14 O -0.63 -36.92 16.66 -3.98 -0.07 -36.98 16 15 C -0.09 -3.77 4.55 -20.10 -0.09 -3.86 16 16 C -0.08 -2.69 7.83 22.55 0.18 -2.52 16 17 C -0.08 -1.91 10.02 22.22 0.22 -1.69 16 18 C -0.10 -2.45 9.07 22.43 0.20 -2.24 16 19 C 0.05 1.59 5.13 22.48 0.12 1.71 16 20 O -0.23 -7.20 10.05 -31.88 -0.32 -7.52 16 21 C 0.21 5.99 8.15 130.58 1.06 7.05 16 22 N -0.53 -14.53 10.59 -318.83 -3.38 -17.90 16 23 C 0.05 1.00 11.34 83.57 0.95 1.95 16 24 C -0.26 -4.04 11.35 66.72 0.76 -3.28 16 25 S 0.11 2.46 21.52 -56.49 -1.22 1.24 16 26 C -0.08 -3.00 9.69 22.65 0.22 -2.78 16 27 H 0.23 6.35 7.80 -4.42 -0.03 6.31 16 28 H 0.08 2.99 6.22 -2.39 -0.01 2.98 16 29 H 0.11 5.15 6.26 -2.39 -0.01 5.13 16 30 H 0.28 12.76 8.31 -92.71 -0.77 11.99 16 31 H 0.14 4.62 5.14 -2.91 -0.01 4.61 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.22 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.22 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -71.23 332.71 4.22 -67.02 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.13 Total: 18.48 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 7.55 Total: -1.29 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -4.89 Total: -84.30 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.39 Total: -44.50 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.22 Total: 1.24 kcal Total: -71.23 4.22 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.918 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds