Wall clock time and date at job start Tue Mar 31 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46783 * 185.51215 * 3 2 1 5 5 C 1.36943 * 119.99864 * 265.84710 * 4 3 2 6 6 H 1.08003 * 119.99542 * 198.13294 * 5 4 3 7 7 C 1.38974 * 120.00041 * 17.85656 * 5 4 3 8 8 N 1.31407 * 120.00085 * 26.89506 * 7 5 4 9 9 Si 1.86803 * 119.99821 * 206.89677 * 7 5 4 10 10 H 1.48497 * 109.47223 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47298 * 120.00303 * 9 7 5 12 12 H 1.48502 * 109.46923 * 240.00235 * 9 7 5 13 13 C 1.34775 * 119.99799 * 85.84919 * 4 3 2 14 14 O 1.21667 * 119.99755 * 174.34049 * 13 4 3 15 15 C 1.47193 * 120.00235 * 354.34470 * 13 4 3 16 16 C 1.36267 * 122.56530 * 175.31996 * 15 13 4 17 17 S 1.71009 * 109.02320 * 179.89551 * 16 15 13 18 18 C 1.75969 * 90.65009 * 0.30401 * 17 16 15 19 19 C 1.47839 * 125.21811 * 179.85545 * 18 17 16 20 20 C 1.39586 * 120.08326 * 179.68534 * 19 18 17 21 21 C 1.37833 * 119.91646 * 179.71881 * 20 19 18 22 22 C 1.38887 * 120.07925 * 0.55420 * 21 20 19 23 23 O 1.35845 * 119.91191 * 179.69390 * 22 21 20 24 24 C 1.38883 * 120.17293 * 359.72160 * 22 21 20 25 25 C 1.37834 * 120.08069 * 359.97438 * 24 22 21 26 26 N 1.29821 * 109.56115 * 359.82005 * 18 17 16 27 27 H 4.40642 * 5.51493 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46957 * 65.51133 * 3 2 1 29 29 H 1.09007 * 109.46862 * 305.51399 * 3 2 1 30 30 H 0.97000 * 119.99809 * 179.97438 * 8 7 5 31 31 H 1.07998 * 125.48736 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.04265 * 359.97438 * 20 19 18 33 33 H 1.07996 * 119.96267 * 180.24928 * 21 20 19 34 34 H 0.96696 * 114.00013 * 270.01929 * 23 22 21 35 35 H 1.07997 * 119.96052 * 179.97438 * 24 22 21 36 36 H 1.08003 * 120.03814 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3757 0.1327 5 6 3.4425 2.1036 -0.9855 6 1 4.0640 2.9830 -0.9026 7 6 2.9610 1.7073 -2.2274 8 7 1.8453 1.0180 -2.3102 9 14 3.8999 2.1546 -3.7792 10 1 5.1147 2.9281 -3.4172 11 1 4.2966 0.9141 -4.4926 12 1 3.0343 2.9777 -4.6615 13 6 3.2783 1.9244 1.3552 14 8 3.7794 3.0270 1.4717 15 6 2.8303 1.1897 2.5494 16 6 3.0348 1.6522 3.8147 17 16 2.3770 0.5349 4.9297 18 6 1.8648 -0.5108 3.6103 19 6 1.1586 -1.7999 3.7690 20 6 0.7955 -2.5419 2.6438 21 6 0.1424 -3.7461 2.7960 22 6 -0.1646 -4.2159 4.0664 23 8 -0.8139 -5.4002 4.2121 24 6 0.1899 -3.4777 5.1881 25 6 0.8488 -2.2756 5.0442 26 7 2.2014 0.0239 2.4762 27 1 -1.0503 -0.0004 -0.0002 28 1 3.0095 -0.4252 -0.9352 29 1 3.0096 -0.5962 0.8366 30 1 1.5090 0.7418 -3.1771 31 1 3.5311 2.5762 4.0719 32 1 1.0297 -2.1749 1.6555 33 1 -0.1353 -4.3228 1.9261 34 1 -1.7776 -5.3217 4.2224 35 1 -0.0509 -3.8461 6.1744 36 1 1.1245 -1.7024 5.9170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799086406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:34 Heat of formation + Delta-G solvation = 79.241883 kcal Electronic energy + Delta-G solvation = -24628.060724 eV Core-core repulsion = 20979.323298 eV Total energy + Delta-G solvation = -3648.737425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.10605 -39.52853 -37.72474 -36.73371 -35.20090 -32.11423 -31.46999 -31.26437 -31.07752 -28.63721 -26.68577 -25.67873 -24.45087 -23.04632 -22.63121 -20.51733 -18.85385 -18.59480 -18.08049 -17.82653 -16.49637 -16.46823 -15.55888 -15.53859 -15.43564 -14.87301 -14.64948 -14.32816 -14.01179 -13.62662 -13.58510 -13.28990 -12.73806 -12.55369 -12.37669 -12.22456 -12.10325 -12.01205 -11.74818 -11.42601 -11.07334 -10.63547 -10.52189 -10.37886 -9.67780 -9.43335 -9.28390 -9.16414 -9.15351 -9.05085 -8.76133 -8.48252 -7.98444 -7.87005 -6.45731 -3.88858 0.32418 1.22912 1.38480 1.46777 1.91134 2.63158 3.13647 3.21882 3.29276 3.58139 3.87265 3.99849 4.07738 4.14248 4.28132 4.37823 4.77158 4.80607 4.93453 5.02429 5.16711 5.28041 5.43785 5.60120 5.65540 5.73092 5.81575 5.89597 6.05935 6.23706 6.30690 6.40841 6.60795 6.66664 6.78312 7.17592 7.43101 7.45797 7.81209 8.00996 8.35950 9.03018 9.04330 9.25726 9.84869 10.52014 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.004161 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.574799 B = 6728.039953 C = 8343.681809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.078 4.078 3 C 0.231 3.769 4 N -0.407 5.407 5 C -0.318 4.318 6 H 0.109 0.891 7 C 0.038 3.962 8 N -0.834 5.834 9 Si 0.918 3.082 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.585 6.585 15 C 0.049 3.951 16 C -0.233 4.233 17 S 0.128 5.872 18 C 0.078 3.922 19 C -0.021 4.021 20 C -0.054 4.054 21 C -0.143 4.143 22 C 0.111 3.889 23 O -0.500 6.500 24 C -0.145 4.145 25 C -0.087 4.087 26 N -0.413 5.413 27 H 0.192 0.808 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.271 0.729 31 H 0.184 0.816 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.391 0.609 35 H 0.132 0.868 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 -11.180 12.960 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.080 4.080 3 C 0.108 3.892 4 N -0.121 5.121 5 C -0.445 4.445 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.469 5.469 9 Si 0.743 3.257 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.285 3.715 14 O -0.471 6.471 15 C -0.087 4.087 16 C -0.375 4.375 17 S 0.385 5.615 18 C -0.197 4.197 19 C -0.025 4.025 20 C -0.075 4.075 21 C -0.162 4.162 22 C 0.066 3.934 23 O -0.311 6.311 24 C -0.164 4.164 25 C -0.107 4.107 26 N -0.128 5.128 27 H 0.210 0.790 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.202 0.798 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.247 0.753 35 H 0.150 0.850 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.737 -11.177 13.432 18.104 hybrid contribution -0.285 0.932 -1.674 1.937 sum -5.023 -10.244 11.758 16.383 Atomic orbital electron populations 1.24010 0.95103 1.02621 1.07794 1.22653 0.93732 0.97694 0.93910 1.18531 0.85097 0.84131 1.01437 1.43638 1.52789 1.11057 1.04651 1.19770 1.29902 1.11664 0.83199 0.87300 1.25374 0.94791 0.97234 0.99624 1.70205 1.15221 1.35444 1.25981 0.86014 0.80236 0.78489 0.80921 1.18899 1.20348 1.20691 1.16836 0.87145 0.85731 0.81805 1.90633 1.50303 1.20832 1.85291 1.20997 1.00733 0.91637 0.95303 1.26561 1.08815 1.06695 0.95474 1.83322 1.51969 1.13522 1.12647 1.25935 1.04234 0.99222 0.90296 1.17844 0.99693 0.91057 0.93921 1.21350 0.94255 0.92481 0.99415 1.21421 1.01364 0.96367 0.97045 1.18616 0.96997 0.85554 0.92226 1.84796 1.23577 1.27120 1.95565 1.21205 1.01775 0.94570 0.98829 1.20993 0.97999 0.95859 0.95867 1.67461 1.11198 1.09061 1.25042 0.79048 0.89219 0.89292 0.91840 0.79829 0.83645 0.84803 0.75326 0.84994 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.92 19.25 29.55 0.57 -5.35 16 2 C -0.08 -1.79 8.93 -37.12 -0.33 -2.12 16 3 C 0.23 5.35 4.76 -6.83 -0.03 5.32 16 4 N -0.41 -10.66 2.59 -119.23 -0.31 -10.97 16 5 C -0.32 -8.78 9.29 -15.00 -0.14 -8.92 16 6 H 0.11 3.15 7.40 -52.48 -0.39 2.76 16 7 C 0.04 0.97 4.71 -17.46 -0.08 0.89 16 8 N -0.83 -21.67 9.76 55.50 0.54 -21.13 16 9 Si 0.92 19.97 29.63 -169.99 -5.04 14.94 16 10 H -0.26 -5.80 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.50 12.86 7.55 -12.62 -0.10 12.77 16 14 O -0.59 -16.63 16.33 5.22 0.09 -16.54 16 15 C 0.05 1.04 6.42 -84.58 -0.54 0.49 16 16 C -0.23 -4.15 10.62 30.02 0.32 -3.83 16 17 S 0.13 1.74 22.10 -107.50 -2.38 -0.64 16 18 C 0.08 1.24 7.31 -14.47 -0.11 1.14 16 19 C -0.02 -0.29 5.87 -104.96 -0.62 -0.91 16 20 C -0.05 -0.73 9.67 -39.23 -0.38 -1.11 16 21 C -0.14 -1.64 9.97 -39.49 -0.39 -2.03 16 22 C 0.11 1.16 6.71 -39.10 -0.26 0.90 16 23 O -0.50 -4.43 13.49 -19.25 -0.26 -4.69 16 24 C -0.15 -1.41 9.97 -39.49 -0.39 -1.81 16 25 C -0.09 -0.94 9.59 -39.23 -0.38 -1.32 16 26 N -0.41 -7.94 5.12 -7.91 -0.04 -7.98 16 27 H 0.19 3.47 7.80 -54.08 -0.42 3.05 16 28 H 0.09 2.13 6.75 -51.93 -0.35 1.78 16 29 H 0.09 1.89 5.69 -51.93 -0.30 1.60 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.18 3.11 8.02 -52.49 -0.42 2.69 16 32 H 0.15 2.22 7.08 -52.49 -0.37 1.85 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.39 1.56 9.06 45.56 0.41 1.97 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.15 7.27 -52.48 -0.38 0.77 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -32.79 334.44 -7.41 -40.20 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -2.20 Total: 7.65 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.86 Total: -5.88 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.19 Total: -40.08 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.17 Total: -21.23 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.04 Total: 14.94 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.38 Total: -0.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.79 -7.41 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799086406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.442 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds