Wall clock time and date at job start Tue Mar 31 2020 14:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46783 * 185.51215 * 3 2 1 5 5 C 1.36943 * 119.99864 * 265.84710 * 4 3 2 6 6 H 1.08003 * 119.99542 * 198.13294 * 5 4 3 7 7 C 1.38974 * 120.00041 * 17.85656 * 5 4 3 8 8 N 1.31407 * 120.00085 * 26.89506 * 7 5 4 9 9 Si 1.86803 * 119.99821 * 206.89677 * 7 5 4 10 10 H 1.48497 * 109.47223 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47298 * 120.00303 * 9 7 5 12 12 H 1.48502 * 109.46923 * 240.00235 * 9 7 5 13 13 C 1.34775 * 119.99799 * 85.84919 * 4 3 2 14 14 O 1.21667 * 119.99755 * 174.34049 * 13 4 3 15 15 C 1.47193 * 120.00235 * 354.34470 * 13 4 3 16 16 C 1.36267 * 122.56530 * 175.31996 * 15 13 4 17 17 S 1.71009 * 109.02320 * 179.89551 * 16 15 13 18 18 C 1.75969 * 90.65009 * 0.30401 * 17 16 15 19 19 C 1.47839 * 125.21811 * 179.85545 * 18 17 16 20 20 C 1.39586 * 120.08326 * 179.68534 * 19 18 17 21 21 C 1.37833 * 119.91646 * 179.71881 * 20 19 18 22 22 C 1.38887 * 120.07925 * 0.55420 * 21 20 19 23 23 O 1.35845 * 119.91191 * 179.69390 * 22 21 20 24 24 C 1.38883 * 120.17293 * 359.72160 * 22 21 20 25 25 C 1.37834 * 120.08069 * 359.97438 * 24 22 21 26 26 N 1.29821 * 109.56115 * 359.82005 * 18 17 16 27 27 H 4.40642 * 5.51493 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46957 * 65.51133 * 3 2 1 29 29 H 1.09007 * 109.46862 * 305.51399 * 3 2 1 30 30 H 0.97000 * 119.99809 * 179.97438 * 8 7 5 31 31 H 1.07998 * 125.48736 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.04265 * 359.97438 * 20 19 18 33 33 H 1.07996 * 119.96267 * 180.24928 * 21 20 19 34 34 H 0.96696 * 114.00013 * 270.01929 * 23 22 21 35 35 H 1.07997 * 119.96052 * 179.97438 * 24 22 21 36 36 H 1.08003 * 120.03814 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3757 0.1327 5 6 3.4425 2.1036 -0.9855 6 1 4.0640 2.9830 -0.9026 7 6 2.9610 1.7073 -2.2274 8 7 1.8453 1.0180 -2.3102 9 14 3.8999 2.1546 -3.7792 10 1 5.1147 2.9281 -3.4172 11 1 4.2966 0.9141 -4.4926 12 1 3.0343 2.9777 -4.6615 13 6 3.2783 1.9244 1.3552 14 8 3.7794 3.0270 1.4717 15 6 2.8303 1.1897 2.5494 16 6 3.0348 1.6522 3.8147 17 16 2.3770 0.5349 4.9297 18 6 1.8648 -0.5108 3.6103 19 6 1.1586 -1.7999 3.7690 20 6 0.7955 -2.5419 2.6438 21 6 0.1424 -3.7461 2.7960 22 6 -0.1646 -4.2159 4.0664 23 8 -0.8139 -5.4002 4.2121 24 6 0.1899 -3.4777 5.1881 25 6 0.8488 -2.2756 5.0442 26 7 2.2014 0.0239 2.4762 27 1 -1.0503 -0.0004 -0.0002 28 1 3.0095 -0.4252 -0.9352 29 1 3.0096 -0.5962 0.8366 30 1 1.5090 0.7418 -3.1771 31 1 3.5311 2.5762 4.0719 32 1 1.0297 -2.1749 1.6555 33 1 -0.1353 -4.3228 1.9261 34 1 -1.7776 -5.3217 4.2224 35 1 -0.0509 -3.8461 6.1744 36 1 1.1245 -1.7024 5.9170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799086406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:33 Heat of formation + Delta-G solvation = 57.813911 kcal Electronic energy + Delta-G solvation = -24628.989910 eV Core-core repulsion = 20979.323298 eV Total energy + Delta-G solvation = -3649.666612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49928 -40.57890 -39.33182 -37.61683 -37.15202 -34.03023 -33.01631 -32.58145 -32.04816 -29.83519 -28.51294 -27.40728 -25.90830 -24.16744 -23.73283 -21.80036 -20.34818 -19.70650 -19.54291 -19.33791 -18.32357 -17.71621 -17.06049 -16.67872 -16.42247 -16.31388 -16.23981 -15.93248 -15.31763 -15.15468 -14.67968 -14.53410 -14.23810 -14.16754 -14.06785 -13.64083 -13.38741 -13.06895 -12.97930 -12.84317 -12.73915 -12.52266 -12.15355 -11.39481 -11.21497 -11.08475 -10.91878 -10.67537 -10.64959 -10.38599 -10.10150 -10.01044 -9.89231 -9.04636 -8.41699 -5.96997 -0.81530 0.22380 0.24542 0.38464 0.56743 1.18532 1.40870 1.44715 1.55606 2.10004 2.32796 2.40749 2.58481 2.74195 2.83898 3.04038 3.26970 3.33349 3.86799 3.95488 4.02896 4.03337 4.19354 4.31778 4.35565 4.49701 4.68708 4.80317 4.83596 4.99806 5.09206 5.29363 5.40632 5.41819 5.47227 5.49344 5.78794 5.96739 6.31591 6.58498 6.89333 7.03272 7.27507 7.32981 7.88408 8.55303 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.004161 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.574799 B = 6728.039953 C = 8343.681809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.104 4.104 3 C 0.242 3.758 4 N -0.421 5.421 5 C -0.365 4.365 6 H 0.080 0.920 7 C 0.011 3.989 8 N -0.850 5.850 9 Si 0.986 3.014 10 H -0.272 1.272 11 H -0.262 1.262 12 H -0.275 1.275 13 C 0.486 3.514 14 O -0.629 6.629 15 C 0.015 3.985 16 C -0.245 4.245 17 S 0.252 5.748 18 C 0.070 3.930 19 C -0.048 4.048 20 C -0.067 4.067 21 C -0.151 4.151 22 C 0.125 3.875 23 O -0.506 6.506 24 C -0.139 4.139 25 C -0.076 4.076 26 N -0.443 5.443 27 H 0.222 0.778 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.277 0.723 31 H 0.186 0.814 32 H 0.119 0.881 33 H 0.142 0.858 34 H 0.414 0.586 35 H 0.164 0.836 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -13.424 15.399 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.106 4.106 3 C 0.119 3.881 4 N -0.135 5.135 5 C -0.492 4.492 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.484 5.484 9 Si 0.808 3.192 10 H -0.196 1.196 11 H -0.186 1.186 12 H -0.201 1.201 13 C 0.275 3.725 14 O -0.517 6.517 15 C -0.121 4.121 16 C -0.387 4.387 17 S 0.511 5.489 18 C -0.205 4.205 19 C -0.051 4.051 20 C -0.088 4.088 21 C -0.170 4.170 22 C 0.079 3.921 23 O -0.320 6.320 24 C -0.157 4.157 25 C -0.097 4.097 26 N -0.158 5.158 27 H 0.239 0.761 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.204 0.796 32 H 0.137 0.863 33 H 0.159 0.841 34 H 0.275 0.725 35 H 0.181 0.819 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.415 -13.461 15.889 21.790 hybrid contribution 0.081 1.467 -2.171 2.621 sum -6.333 -11.995 13.718 19.291 Atomic orbital electron populations 1.24723 0.95919 1.01303 1.06638 1.22729 0.94017 0.98869 0.94980 1.18441 0.85730 0.82843 1.01044 1.43796 1.53179 1.11945 1.04590 1.19669 1.31943 1.12528 0.85049 0.90216 1.26105 0.95064 0.96752 1.01644 1.70265 1.15635 1.35544 1.26931 0.85026 0.78496 0.78657 0.76975 1.19637 1.18643 1.20054 1.17562 0.86025 0.85741 0.83170 1.90560 1.51985 1.22813 1.86390 1.20426 1.03824 0.93390 0.94444 1.26873 1.08007 1.07716 0.96151 1.82767 1.48459 1.09347 1.08300 1.26435 1.03203 1.00080 0.90793 1.17930 1.01412 0.90583 0.95221 1.21201 0.95491 0.93625 0.98529 1.21509 1.01355 0.95824 0.98286 1.18685 0.96036 0.85490 0.91879 1.84741 1.25626 1.26239 1.95383 1.21518 1.00475 0.93727 0.99986 1.21205 0.97021 0.96307 0.95123 1.67321 1.12543 1.08717 1.27252 0.76089 0.90865 0.87948 0.91294 0.79642 0.86276 0.84059 0.72533 0.81872 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.54 19.25 74.32 1.43 -10.11 16 2 C -0.10 -4.94 8.93 31.13 0.28 -4.66 16 3 C 0.24 11.86 4.76 84.57 0.40 12.26 16 4 N -0.42 -23.53 2.59 -649.37 -1.68 -25.21 16 5 C -0.36 -21.50 9.29 84.07 0.78 -20.72 16 6 H 0.08 5.02 7.40 -2.91 -0.02 5.00 16 7 C 0.01 0.59 4.71 84.93 0.40 0.99 16 8 N -0.85 -45.35 9.76 21.67 0.21 -45.13 16 9 Si 0.99 42.29 29.63 68.60 2.03 44.32 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 12 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 13 C 0.49 26.80 7.55 86.60 0.65 27.45 16 14 O -0.63 -38.30 16.33 -4.24 -0.07 -38.37 16 15 C 0.01 0.65 6.42 40.91 0.26 0.92 16 16 C -0.24 -8.65 10.62 67.36 0.72 -7.94 16 17 S 0.25 6.11 22.10 -56.49 -1.25 4.86 16 18 C 0.07 2.13 7.31 87.53 0.64 2.77 16 19 C -0.05 -1.21 5.87 -20.09 -0.12 -1.32 16 20 C -0.07 -1.77 9.67 22.50 0.22 -1.55 16 21 C -0.15 -3.19 9.97 22.33 0.22 -2.97 16 22 C 0.12 2.16 6.71 22.58 0.15 2.31 16 23 O -0.51 -6.97 13.49 -91.81 -1.24 -8.21 16 24 C -0.14 -2.08 9.97 22.33 0.22 -1.85 16 25 C -0.08 -1.35 9.59 22.50 0.22 -1.14 16 26 N -0.44 -17.38 5.12 -178.94 -0.92 -18.30 16 27 H 0.22 7.77 7.80 -4.41 -0.03 7.74 16 28 H 0.07 3.72 6.75 -2.39 -0.02 3.70 16 29 H 0.10 4.65 5.69 -2.38 -0.01 4.64 16 30 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.19 6.34 8.02 -2.91 -0.02 6.31 16 32 H 0.12 3.79 7.08 -2.91 -0.02 3.77 16 33 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.41 1.58 9.06 -74.06 -0.67 0.91 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.91 7.27 -2.91 -0.02 1.89 16 Total: -1.00 -76.37 334.44 4.05 -72.32 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.48 Total: 19.27 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 6.48 Total: -5.56 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.38 Total: -88.64 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.31 Total: -46.57 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.25 Total: 4.86 kcal Total: -76.37 4.05 -72.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799086406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.136 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds