Wall clock time and date at job start Tue Mar 31 2020 14:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00207 * 2 1 4 4 N 1.46498 * 109.46769 * 125.00304 * 3 2 1 5 5 C 1.38454 * 119.99908 * 179.72350 * 4 3 2 6 6 N 1.29422 * 125.17801 * 180.02562 * 5 4 3 7 7 C 1.33672 * 116.89732 * 179.78217 * 6 5 4 8 8 C 1.47008 * 122.48850 * 180.26899 * 7 6 5 9 9 O 1.21575 * 119.99495 * 180.25916 * 8 7 6 10 10 O 1.34821 * 120.00019 * 0.25945 * 8 7 6 11 11 C 1.45206 * 116.99691 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47047 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47204 * 179.97438 * 12 11 10 14 14 S 1.80998 * 109.47145 * 179.97438 * 13 12 11 15 15 C 1.76199 * 100.00186 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99624 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00293 * 180.02562 * 15 14 13 18 18 N 1.31636 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00159 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47470 * 59.99786 * 19 17 15 21 21 H 1.48501 * 109.47316 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46745 * 299.99663 * 19 17 15 23 23 C 1.35140 * 115.01669 * 0.50891 * 7 6 5 24 24 S 1.76051 * 125.17415 * 0.30652 * 5 4 3 25 25 H 1.08008 * 119.99728 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00364 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99918 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47210 * 5.00662 * 3 2 1 29 29 H 1.08994 * 109.47121 * 245.00632 * 3 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.46963 * 300.00010 * 11 10 8 32 32 H 1.08996 * 109.47175 * 60.00174 * 11 10 8 33 33 H 1.09001 * 109.47152 * 300.00336 * 12 11 10 34 34 H 1.09004 * 109.47331 * 59.99562 * 12 11 10 35 35 H 1.08997 * 109.46949 * 300.00128 * 13 12 11 36 36 H 1.09004 * 109.46875 * 60.00473 * 13 12 11 37 37 H 0.97002 * 119.99806 * 180.02562 * 18 17 15 38 38 H 1.07998 * 125.87590 * 179.73175 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 3.8043 2.4356 1.3354 6 7 4.6592 2.5651 2.2983 7 6 5.3606 3.7025 2.3353 8 6 6.3675 3.9759 3.3710 9 8 6.9761 5.0283 3.3641 10 8 6.6159 3.0596 4.3283 11 6 7.6225 3.3975 5.3187 12 6 7.7644 2.2452 6.3152 13 6 8.8256 2.6008 7.3584 14 16 8.9929 1.2379 8.5377 15 6 10.2415 1.8970 9.5919 16 1 10.6529 2.8760 9.3950 17 6 10.6963 1.1580 10.6752 18 7 10.1944 -0.0350 10.9153 19 14 12.0195 1.8570 11.7931 20 1 11.5366 3.1234 12.4001 21 1 12.3277 0.8788 12.8671 22 1 13.2466 2.1243 11.0006 23 6 5.0716 4.5843 1.3529 24 16 3.8236 3.8795 0.3283 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6212 1.4026 -0.9314 30 1 3.0451 0.5742 1.7351 31 1 8.5776 3.5687 4.8222 32 1 7.3216 4.3009 5.8491 33 1 6.8092 2.0744 6.8116 34 1 8.0650 1.3413 5.7852 35 1 9.7807 2.7713 6.8617 36 1 8.5253 3.5046 7.8886 37 1 10.5120 -0.5513 11.6726 38 1 5.5274 5.5542 1.2188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805361076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:09 Heat of formation + Delta-G solvation = -45.529554 kcal Electronic energy + Delta-G solvation = -21087.062921 eV Core-core repulsion = 17568.358951 eV Total energy + Delta-G solvation = -3518.703969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76112 -40.21051 -38.02635 -37.57700 -34.91087 -34.58202 -34.17258 -30.88158 -28.51881 -27.69310 -27.02455 -25.85717 -23.42485 -22.71850 -21.60394 -20.55746 -19.94516 -19.51221 -18.36301 -17.83423 -17.49818 -17.29103 -16.89730 -16.75287 -16.36083 -16.14933 -15.92060 -15.25731 -15.08153 -14.53621 -14.36919 -14.10774 -14.06710 -13.83626 -13.52902 -13.15304 -13.05479 -12.93229 -12.64839 -12.42281 -12.41966 -12.11119 -11.95336 -11.61967 -11.52995 -11.49886 -11.13954 -10.79321 -10.54226 -10.36797 -10.28573 -8.91430 -8.68815 -8.37784 -6.14953 -0.53744 -0.07532 0.32685 0.77872 1.09457 1.28398 1.41568 1.44585 1.53199 1.84337 2.06324 2.16068 2.27481 2.96531 3.24993 3.35324 3.75891 3.82877 3.95274 4.01290 4.10485 4.13890 4.17138 4.31743 4.43831 4.47063 4.58854 4.66210 4.70254 4.99520 5.00362 5.06144 5.29263 5.39548 5.47150 5.65984 5.74832 6.15721 6.17640 6.46246 6.81182 7.04179 8.71425 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.001821 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.824714 B =15372.035916 C =16722.061537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.188 4.188 3 C 0.145 3.855 4 N -0.682 5.682 5 C 0.332 3.668 6 N -0.551 5.551 7 C 0.049 3.951 8 C 0.541 3.459 9 O -0.521 6.521 10 O -0.342 6.342 11 C 0.078 3.922 12 C -0.085 4.085 13 C -0.090 4.090 14 S -0.187 6.187 15 C -0.542 4.542 16 H 0.075 0.925 17 C 0.015 3.985 18 N -0.907 5.907 19 Si 0.996 3.004 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.265 1.265 23 C -0.206 4.206 24 S 0.165 5.835 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.418 0.582 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.272 0.728 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.484 5.525 -28.303 35.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.206 4.206 3 C 0.023 3.977 4 N -0.323 5.323 5 C -0.042 4.042 6 N -0.279 5.279 7 C -0.081 4.081 8 C 0.383 3.617 9 O -0.411 6.411 10 O -0.257 6.257 11 C 0.002 3.998 12 C -0.123 4.123 13 C -0.239 4.239 14 S 0.042 5.958 15 C -0.689 4.689 16 H 0.093 0.907 17 C -0.190 4.190 18 N -0.543 5.543 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.189 1.189 23 C -0.350 4.350 24 S 0.414 5.586 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.257 0.743 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -21.454 4.561 -28.789 36.192 hybrid contribution 2.246 1.157 1.831 3.120 sum -19.208 5.717 -26.958 33.591 Atomic orbital electron populations 1.24221 0.95567 1.03559 0.95663 1.22820 0.96361 0.97406 1.04007 1.20849 0.91113 0.97843 0.87923 1.44183 1.39767 1.15742 1.32581 1.24435 0.93184 0.93879 0.92708 1.66597 1.12620 1.23363 1.25301 1.18663 0.99985 0.91952 0.97542 1.20314 0.80285 0.81033 0.80023 1.90861 1.49473 1.26126 1.74662 1.86664 1.56142 1.45473 1.37442 1.23146 0.90101 0.98709 0.87803 1.21077 0.99086 0.97807 0.94347 1.23057 1.01083 1.01122 0.98643 1.84669 1.53404 1.26296 1.31433 1.23034 1.24824 1.06115 1.14963 0.90671 1.26083 0.99408 0.94988 0.98485 1.70150 1.42927 1.11864 1.29379 0.85045 0.77740 0.78210 0.77285 1.18916 1.19916 1.18923 1.27085 1.03759 1.05723 0.98388 1.84641 1.36055 1.08967 1.28969 0.87298 0.86729 0.85975 0.89881 0.89475 0.74332 0.90312 0.90327 0.90541 0.90541 0.91108 0.91118 0.91901 0.77837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 14.32 67.78 0.97 0.40 16 2 C -0.19 -0.93 9.63 25.65 0.25 -0.69 16 3 C 0.15 0.88 6.03 85.63 0.52 1.40 16 4 N -0.68 -8.37 5.70 -350.70 -2.00 -10.36 16 5 C 0.33 5.93 8.42 179.45 1.51 7.44 16 6 N -0.55 -14.09 10.52 -187.48 -1.97 -16.06 16 7 C 0.05 1.26 6.67 40.45 0.27 1.53 16 8 C 0.54 16.64 7.93 70.12 0.56 17.20 16 9 O -0.52 -17.12 16.46 19.59 0.32 -16.79 16 10 O -0.34 -11.17 10.14 -57.33 -0.58 -11.76 16 11 C 0.08 2.42 5.48 71.98 0.39 2.81 16 12 C -0.08 -2.95 5.60 30.59 0.17 -2.78 16 13 C -0.09 -3.72 5.67 71.98 0.41 -3.31 16 14 S -0.19 -10.12 21.44 -56.49 -1.21 -11.34 16 15 C -0.54 -31.69 9.50 67.95 0.65 -31.05 16 16 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 17 C 0.02 0.89 5.49 84.85 0.47 1.35 16 18 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 19 Si 1.00 44.40 29.55 68.60 2.03 46.43 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 C -0.21 -3.83 10.84 67.11 0.73 -3.11 16 24 S 0.17 2.05 22.61 -56.49 -1.28 0.77 16 25 H 0.11 0.24 7.84 -2.91 -0.02 0.21 16 26 H 0.11 0.26 8.06 -2.91 -0.02 0.24 16 27 H 0.12 0.56 8.06 -2.91 -0.02 0.54 16 28 H 0.08 0.36 7.79 -2.38 -0.02 0.34 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.42 5.18 8.59 -92.71 -0.80 4.38 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.07 2.83 8.14 -2.40 -0.02 2.81 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.20 3.09 8.01 -2.91 -0.02 3.07 16 Total: -1.00 -74.36 367.98 2.76 -71.60 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.28 Total: 11.33 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 6.88 Total: -8.80 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -3.69 Total: -81.45 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.26 Total: -28.55 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -2.49 Total: -10.56 kcal Total: -74.36 2.76 -71.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805361076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.070 kcal (2) G-P(sol) polarization free energy of solvation -74.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds