Wall clock time and date at job start Tue Mar 31 2020 15:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46571 * 2 1 4 4 C 1.50700 * 109.46827 * 119.99721 * 2 1 3 5 5 O 1.20827 * 119.99615 * 120.00405 * 4 2 1 6 6 O 1.34226 * 120.00171 * 300.00090 * 4 2 1 7 7 C 1.45204 * 116.99773 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47100 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47490 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.47612 * 180.02562 * 9 8 7 11 11 C 1.76191 * 100.00048 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00094 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99993 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46765 * 119.99751 * 15 13 11 18 18 H 1.48495 * 109.46862 * 239.99791 * 15 13 11 19 19 C 1.50693 * 109.47175 * 240.00291 * 2 1 3 20 20 C 1.38265 * 119.99277 * 299.97313 * 19 2 1 21 21 C 1.38215 * 120.02666 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.01496 * 0.02562 * 21 20 19 23 23 C 1.38327 * 119.98569 * 359.76615 * 22 21 20 24 24 Cl 1.73604 * 120.01716 * 180.27842 * 23 22 21 25 25 C 1.38195 * 119.99579 * 120.00308 * 19 2 1 26 26 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47646 * 300.00262 * 1 2 3 28 28 H 1.09002 * 109.47083 * 60.00398 * 1 2 3 29 29 H 1.08999 * 109.47765 * 300.00572 * 7 6 4 30 30 H 1.09004 * 109.46722 * 60.00737 * 7 6 4 31 31 H 1.08999 * 109.47385 * 300.00368 * 8 7 6 32 32 H 1.09001 * 109.46946 * 60.00365 * 8 7 6 33 33 H 1.08999 * 109.46909 * 300.00417 * 9 8 7 34 34 H 1.09001 * 109.46925 * 60.00110 * 9 8 7 35 35 H 0.96999 * 119.99753 * 179.97438 * 14 13 11 36 36 H 1.08007 * 119.98705 * 0.02725 * 20 19 2 37 37 H 1.08000 * 119.99310 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.00805 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.00237 * 359.97104 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7270 -1.6927 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2266 -0.9863 3.5897 8 6 1.7557 -0.3191 4.8834 9 6 2.3027 -1.0926 6.0848 10 16 1.7449 -0.3037 7.6153 11 6 2.4984 -1.3679 8.8002 12 1 3.0921 -2.2079 8.4713 13 6 2.3279 -1.1273 10.1566 14 7 1.6038 -0.1038 10.5576 15 14 3.1262 -2.2560 11.4130 16 1 3.8811 -3.3241 10.7098 17 1 4.0556 -1.4705 12.2640 18 1 2.0759 -2.8710 12.2637 19 6 2.0323 -0.7103 -1.2304 20 6 1.6987 -2.0342 -1.4489 21 6 2.1595 -2.6865 -2.5769 22 6 2.9547 -2.0158 -3.4872 23 6 3.2853 -0.6901 -3.2714 24 17 4.2779 0.1552 -4.4178 25 6 2.8269 -0.0386 -2.1400 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8625 -2.0132 3.5566 30 1 3.3162 -0.9859 3.5569 31 1 2.1202 0.7076 4.9163 32 1 0.6662 -0.3190 4.9164 33 1 1.9385 -2.1195 6.0521 34 1 3.3922 -1.0923 6.0516 35 1 1.4844 0.0640 11.5054 36 1 1.0777 -2.5588 -0.7377 37 1 1.8982 -3.7205 -2.7472 38 1 3.3143 -2.5255 -4.3689 39 1 3.0874 0.9955 -1.9692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805467152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:46 Heat of formation + Delta-G solvation = -92.643242 kcal Electronic energy + Delta-G solvation = -21654.230005 eV Core-core repulsion = 18099.146575 eV Total energy + Delta-G solvation = -3555.083430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97658 -39.55635 -37.07830 -36.62619 -34.69566 -33.46483 -32.46386 -31.23311 -29.94191 -26.84322 -25.59894 -25.05483 -23.13875 -22.76954 -21.36576 -20.44145 -17.81900 -17.55977 -17.36446 -16.86609 -16.44826 -15.93691 -15.52681 -14.83963 -14.79117 -14.51760 -14.34434 -13.92280 -13.88441 -13.54266 -13.18438 -12.85193 -12.66885 -12.48085 -12.23043 -12.14365 -11.87158 -11.69087 -11.62336 -11.37104 -11.17994 -11.16196 -11.02015 -10.91429 -10.70559 -10.47044 -10.32291 -9.65385 -9.35350 -9.10501 -9.05337 -8.37782 -6.58789 -6.27012 -3.98055 0.73366 0.83080 1.72662 2.05151 2.48918 3.19068 3.19202 3.26344 3.28990 3.52932 3.97509 4.17834 4.31023 4.51103 4.63198 4.67025 4.74013 4.82798 4.99808 5.07195 5.10191 5.14943 5.20861 5.34071 5.36299 5.38617 5.45179 5.46728 5.70990 5.74208 5.78388 5.87758 5.93000 6.05918 6.13048 6.34604 6.41388 6.41813 6.64142 7.57437 7.62823 8.33047 9.19632 10.81189 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030016 B = 0.001723 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.605940 B =16245.826722 C =16409.013916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 H 0.119 0.881 4 C 0.463 3.537 5 O -0.501 6.501 6 O -0.352 6.352 7 C 0.073 3.927 8 C -0.097 4.097 9 C -0.115 4.115 10 S -0.124 6.124 11 C -0.518 4.518 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.869 5.869 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.064 4.064 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.037 4.037 24 Cl -0.072 7.072 25 C -0.099 4.099 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 -0.372 -29.806 29.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 H 0.137 0.863 4 C 0.305 3.695 5 O -0.388 6.388 6 O -0.268 6.268 7 C -0.002 4.002 8 C -0.136 4.136 9 C -0.263 4.263 10 S 0.104 5.896 11 C -0.666 4.666 12 H 0.092 0.908 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.064 4.064 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.063 4.063 24 Cl -0.043 7.043 25 C -0.117 4.117 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.360 0.417 -29.565 29.600 hybrid contribution 1.569 -1.843 0.650 2.506 sum 0.209 -1.426 -28.916 28.952 Atomic orbital electron populations 1.21822 0.90591 1.03496 1.04086 1.19940 0.98751 1.00341 0.87156 0.86296 1.23394 0.77864 0.83115 0.85146 1.90696 1.35096 1.25699 1.87325 1.86468 1.69597 1.55898 1.14858 1.23292 0.99063 0.95433 0.82443 1.21282 1.02283 1.00271 0.89749 1.23181 1.02655 1.01950 0.98541 1.84649 1.68988 1.41250 0.94674 1.22739 1.36757 1.14929 0.92207 0.90784 1.25024 0.95165 0.95813 0.97791 1.70026 1.37188 1.27217 1.16022 0.86092 0.78965 0.80014 0.80331 1.19581 1.20529 1.20535 1.19249 0.98015 0.94473 0.94683 1.21075 0.98475 0.93616 0.96635 1.21103 0.97370 1.00227 0.93851 1.21091 0.98522 0.92598 1.00378 1.20821 0.98795 0.93572 0.93134 1.98377 1.68612 1.77755 1.59549 1.20892 0.97362 1.00589 0.92891 0.91733 0.90135 0.90687 0.91145 0.91158 0.90333 0.90326 0.91754 0.91745 0.92288 0.85473 0.84850 0.84905 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.94 37.16 0.33 -0.60 16 2 C -0.04 -0.35 3.00 -92.93 -0.28 -0.63 16 3 H 0.12 0.77 7.88 -51.93 -0.41 0.36 16 4 C 0.46 5.53 7.12 36.01 0.26 5.79 16 5 O -0.50 -7.34 14.86 -18.75 -0.28 -7.62 16 6 O -0.35 -4.53 10.12 -39.25 -0.40 -4.93 16 7 C 0.07 1.01 5.47 37.15 0.20 1.22 16 8 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 9 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 10 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 11 C -0.52 -14.71 9.50 30.94 0.29 -14.41 16 12 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 14 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 15 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.06 -0.56 4.40 -104.63 -0.46 -1.02 16 20 C -0.08 -0.70 7.93 -39.58 -0.31 -1.02 16 21 C -0.11 -0.82 10.04 -39.59 -0.40 -1.22 16 22 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 23 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 24 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.08 16 25 C -0.10 -0.83 9.46 -39.55 -0.37 -1.20 16 26 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 27 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 1.08 7.52 -52.48 -0.39 0.68 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 0.91 7.95 -52.49 -0.42 0.50 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -32.27 366.29 -10.04 -42.31 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.37 Total: -2.40 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.41 Total: -16.72 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.73 Total: -24.96 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.68 Total: -12.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.27 -10.04 -42.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805467152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.334 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds