Wall clock time and date at job start Tue Mar 31 2020 15:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46571 * 2 1 4 4 C 1.50700 * 109.46827 * 119.99721 * 2 1 3 5 5 O 1.20827 * 119.99615 * 120.00405 * 4 2 1 6 6 O 1.34226 * 120.00171 * 300.00090 * 4 2 1 7 7 C 1.45204 * 116.99773 * 179.97438 * 6 4 2 8 8 C 1.52994 * 109.47100 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47490 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.47612 * 180.02562 * 9 8 7 11 11 C 1.76191 * 100.00048 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00094 * 359.97438 * 11 10 9 13 13 C 1.38801 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99993 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46765 * 119.99751 * 15 13 11 18 18 H 1.48495 * 109.46862 * 239.99791 * 15 13 11 19 19 C 1.50693 * 109.47175 * 240.00291 * 2 1 3 20 20 C 1.38265 * 119.99277 * 299.97313 * 19 2 1 21 21 C 1.38215 * 120.02666 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.01496 * 0.02562 * 21 20 19 23 23 C 1.38327 * 119.98569 * 359.76615 * 22 21 20 24 24 Cl 1.73604 * 120.01716 * 180.27842 * 23 22 21 25 25 C 1.38195 * 119.99579 * 120.00308 * 19 2 1 26 26 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47646 * 300.00262 * 1 2 3 28 28 H 1.09002 * 109.47083 * 60.00398 * 1 2 3 29 29 H 1.08999 * 109.47765 * 300.00572 * 7 6 4 30 30 H 1.09004 * 109.46722 * 60.00737 * 7 6 4 31 31 H 1.08999 * 109.47385 * 300.00368 * 8 7 6 32 32 H 1.09001 * 109.46946 * 60.00365 * 8 7 6 33 33 H 1.08999 * 109.46909 * 300.00417 * 9 8 7 34 34 H 1.09001 * 109.46925 * 60.00110 * 9 8 7 35 35 H 0.96999 * 119.99753 * 179.97438 * 14 13 11 36 36 H 1.08007 * 119.98705 * 0.02725 * 20 19 2 37 37 H 1.08000 * 119.99310 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.00805 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.00237 * 359.97104 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7270 -1.6927 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2266 -0.9863 3.5897 8 6 1.7557 -0.3191 4.8834 9 6 2.3027 -1.0926 6.0848 10 16 1.7449 -0.3037 7.6153 11 6 2.4984 -1.3679 8.8002 12 1 3.0921 -2.2079 8.4713 13 6 2.3279 -1.1273 10.1566 14 7 1.6038 -0.1038 10.5576 15 14 3.1262 -2.2560 11.4130 16 1 3.8811 -3.3241 10.7098 17 1 4.0556 -1.4705 12.2640 18 1 2.0759 -2.8710 12.2637 19 6 2.0323 -0.7103 -1.2304 20 6 1.6987 -2.0342 -1.4489 21 6 2.1595 -2.6865 -2.5769 22 6 2.9547 -2.0158 -3.4872 23 6 3.2853 -0.6901 -3.2714 24 17 4.2779 0.1552 -4.4178 25 6 2.8269 -0.0386 -2.1400 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8625 -2.0132 3.5566 30 1 3.3162 -0.9859 3.5569 31 1 2.1202 0.7076 4.9163 32 1 0.6662 -0.3190 4.9164 33 1 1.9385 -2.1195 6.0521 34 1 3.3922 -1.0923 6.0516 35 1 1.4844 0.0640 11.5054 36 1 1.0777 -2.5588 -0.7377 37 1 1.8982 -3.7205 -2.7472 38 1 3.3143 -2.5255 -4.3689 39 1 3.0874 0.9955 -1.9692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805467152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:46 Heat of formation + Delta-G solvation = -107.891174 kcal Electronic energy + Delta-G solvation = -21654.891205 eV Core-core repulsion = 18099.146575 eV Total energy + Delta-G solvation = -3555.744630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87193 -40.26705 -37.95242 -37.41363 -35.41918 -34.79086 -34.57190 -31.82791 -30.55691 -28.25618 -27.51293 -25.84761 -23.76345 -23.59074 -22.67787 -21.25390 -19.57984 -18.65714 -18.18900 -17.86085 -17.36010 -16.90747 -16.59932 -16.37183 -15.99748 -15.89493 -15.10087 -15.01194 -14.52378 -14.50174 -14.34445 -14.08856 -13.81355 -13.50197 -13.21823 -13.09091 -12.97047 -12.82661 -12.62436 -12.50504 -12.40921 -12.40268 -12.26202 -12.22047 -11.76801 -11.62154 -11.51220 -11.31059 -11.16723 -10.36487 -9.95836 -9.67733 -8.68500 -8.39056 -6.15307 0.10483 0.22603 1.09938 1.12425 1.28179 1.38067 1.44116 1.53625 1.85293 2.26163 2.63943 2.95589 3.27445 3.33207 3.61025 3.83405 3.85036 3.98099 3.99951 4.11804 4.14742 4.15449 4.22119 4.31975 4.42821 4.50993 4.66219 4.68214 4.81815 4.85825 4.92144 5.01542 5.11480 5.18003 5.24406 5.33759 5.39524 5.43359 5.45526 5.77806 6.17218 6.65902 7.03748 8.70465 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030016 B = 0.001723 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.605940 B =16245.826722 C =16409.013916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 H 0.140 0.860 4 C 0.463 3.537 5 O -0.530 6.530 6 O -0.352 6.352 7 C 0.081 3.919 8 C -0.085 4.085 9 C -0.092 4.092 10 S -0.183 6.183 11 C -0.541 4.541 12 H 0.073 0.927 13 C 0.016 3.984 14 N -0.906 5.906 15 Si 0.994 3.006 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.271 1.271 19 C -0.074 4.074 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.048 4.048 24 Cl -0.072 7.072 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.272 0.728 36 H 0.125 0.875 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -0.945 -30.877 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.158 0.842 4 C 0.307 3.693 5 O -0.419 6.419 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.124 4.124 9 C -0.241 4.241 10 S 0.045 5.955 11 C -0.689 4.689 12 H 0.092 0.908 13 C -0.189 4.189 14 N -0.542 5.542 15 Si 0.816 3.184 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.196 1.196 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.075 4.075 24 Cl -0.043 7.043 25 C -0.124 4.124 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.067 -0.145 -30.653 30.672 hybrid contribution 1.472 -1.662 0.856 2.379 sum 0.405 -1.807 -29.798 29.855 Atomic orbital electron populations 1.21838 0.89185 1.03656 1.04987 1.20062 0.99775 1.00745 0.84960 0.84194 1.24156 0.77020 0.82774 0.85379 1.90685 1.36543 1.27136 1.87538 1.86465 1.69593 1.55741 1.15058 1.23011 0.98979 0.95305 0.82172 1.21098 1.02245 0.99828 0.89201 1.23074 1.02700 1.01911 0.96446 1.84610 1.69838 1.42803 0.98216 1.23090 1.37111 1.15299 0.93355 0.90842 1.26054 0.95550 0.97366 0.99941 1.70147 1.38401 1.28926 1.16745 0.84968 0.78122 0.77923 0.77372 1.18762 1.19677 1.19635 1.19338 0.98453 0.94673 0.94940 1.21229 0.98893 0.93939 0.97146 1.21366 0.96932 1.01186 0.93360 1.21345 0.98196 0.92485 1.00909 1.20991 0.99089 0.94037 0.93364 1.98375 1.68612 1.77781 1.59504 1.21074 0.97142 1.01330 0.92823 0.91995 0.90144 0.88829 0.90846 0.91139 0.90235 0.90060 0.91378 0.91498 0.91890 0.85666 0.82887 0.83304 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.94 71.98 0.64 -0.93 16 2 C -0.04 -0.55 3.00 -12.29 -0.04 -0.58 16 3 H 0.14 1.49 7.88 -2.38 -0.02 1.47 16 4 C 0.46 10.50 7.12 71.24 0.51 11.01 16 5 O -0.53 -15.13 14.86 21.96 0.33 -14.81 16 6 O -0.35 -8.58 10.12 -51.38 -0.52 -9.10 16 7 C 0.08 2.16 5.47 71.98 0.39 2.55 16 8 C -0.09 -2.62 5.60 30.59 0.17 -2.45 16 9 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 10 S -0.18 -9.55 21.44 -56.49 -1.21 -10.76 16 11 C -0.54 -30.92 9.50 67.95 0.65 -30.28 16 12 H 0.07 4.06 7.80 -2.91 -0.02 4.03 16 13 C 0.02 0.90 5.49 84.86 0.47 1.37 16 14 N -0.91 -54.07 13.22 21.65 0.29 -53.79 16 15 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 19 C -0.07 -1.20 4.40 -19.87 -0.09 -1.29 16 20 C -0.09 -1.56 7.93 22.27 0.18 -1.38 16 21 C -0.11 -1.54 10.04 22.26 0.22 -1.32 16 22 C -0.11 -1.56 9.83 22.29 0.22 -1.34 16 23 C -0.05 -0.76 6.32 22.32 0.14 -0.62 16 24 Cl -0.07 -1.08 28.96 -2.72 -0.08 -1.15 16 25 C -0.11 -1.62 9.46 22.29 0.21 -1.41 16 26 H 0.06 0.73 7.39 -2.38 -0.02 0.72 16 27 H 0.08 0.93 8.11 -2.39 -0.02 0.91 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 30 H 0.07 1.89 8.13 -2.39 -0.02 1.88 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 34 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 36 H 0.13 2.05 7.52 -2.91 -0.02 2.03 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.15 1.75 7.95 -2.91 -0.02 1.73 16 Total: -1.00 -69.21 366.29 5.96 -63.26 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.04 Total: 10.54 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 4.08 Total: -29.84 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.29 Total: -53.79 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.19 Total: -23.91 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.21 Total: -10.76 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.15 kcal Total: -69.21 5.96 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805467152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.634 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds