Wall clock time and date at job start Tue Mar 31 2020 15:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47160 * 2 1 4 4 C 1.50700 * 109.46955 * 240.00572 * 2 1 3 5 5 O 1.20828 * 119.99860 * 239.99775 * 4 2 1 6 6 O 1.34229 * 120.00264 * 59.99372 * 4 2 1 7 7 C 1.45201 * 117.00270 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47504 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47471 * 179.97438 * 8 7 6 10 10 S 1.80996 * 109.47076 * 179.97438 * 9 8 7 11 11 C 1.76201 * 99.99861 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00168 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00317 * 180.02562 * 11 10 9 14 14 N 1.31629 * 119.99592 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00462 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46990 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47132 * 119.99952 * 15 13 11 18 18 H 1.48497 * 109.47040 * 240.00145 * 15 13 11 19 19 C 1.50694 * 109.47601 * 120.00371 * 2 1 3 20 20 C 1.38265 * 119.99277 * 60.01776 * 19 2 1 21 21 C 1.38216 * 120.02667 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.01494 * 359.96105 * 21 20 19 23 23 C 1.38328 * 119.98526 * 359.76620 * 22 21 20 24 24 Cl 1.73604 * 120.01692 * 180.27839 * 23 22 21 25 25 C 1.38195 * 119.99579 * 240.00382 * 19 2 1 26 26 H 1.08998 * 109.47475 * 59.99441 * 1 2 3 27 27 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47012 * 299.99784 * 1 2 3 29 29 H 1.09004 * 109.47256 * 300.00456 * 7 6 4 30 30 H 1.08997 * 109.46966 * 60.00142 * 7 6 4 31 31 H 1.09004 * 109.46807 * 300.00206 * 8 7 6 32 32 H 1.08997 * 109.47322 * 59.99834 * 8 7 6 33 33 H 1.08994 * 109.47202 * 300.00468 * 9 8 7 34 34 H 1.09007 * 109.46448 * 59.99829 * 9 8 7 35 35 H 0.97005 * 120.00286 * 180.02562 * 14 13 11 36 36 H 1.08007 * 119.98705 * 359.97438 * 20 19 2 37 37 H 1.08001 * 119.99346 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00805 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.00237 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7269 -1.6927 -1.1198 6 8 1.7079 -0.2517 -2.4497 7 6 2.2275 -0.9855 -3.5898 8 6 1.7563 -0.3183 -4.8835 9 6 2.3043 -1.0911 -6.0849 10 16 1.7462 -0.3022 -7.6153 11 6 2.4997 -1.3663 -8.8004 12 1 3.0936 -2.2062 -8.4715 13 6 2.3299 -1.1252 -10.1567 14 7 1.6065 -0.1012 -10.5576 15 14 3.1281 -2.2537 -11.4132 16 1 3.8823 -3.3225 -10.7101 17 1 2.0779 -2.8679 -12.2646 18 1 4.0582 -1.4684 -12.2636 19 6 2.0324 -0.7104 1.2303 20 6 1.6987 -2.0343 1.4487 21 6 2.1587 -2.6864 2.5772 22 6 2.9534 -2.0156 3.4878 23 6 3.2923 -0.6928 3.2670 24 17 4.2963 0.1483 4.4065 25 6 2.8269 -0.0388 2.1400 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.3170 -0.9843 -3.5568 30 1 1.8641 -2.0126 -3.5571 31 1 0.6668 -0.3191 -4.9167 32 1 2.1200 0.7087 -4.9160 33 1 3.3938 -1.0899 -6.0514 34 1 1.9409 -2.1183 -6.0525 35 1 1.4875 0.0671 -11.5055 36 1 1.0776 -2.5588 0.7376 37 1 1.8973 -3.7204 2.7475 38 1 3.3132 -2.5255 4.3694 39 1 3.0873 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805467153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:49 Heat of formation + Delta-G solvation = -92.634848 kcal Electronic energy + Delta-G solvation = -21654.670255 eV Core-core repulsion = 18099.587190 eV Total energy + Delta-G solvation = -3555.083066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97652 -39.55610 -37.07822 -36.62613 -34.69583 -33.46486 -32.46356 -31.23306 -29.94192 -26.84320 -25.59849 -25.05472 -23.13879 -22.76971 -21.36575 -20.44149 -17.81898 -17.55977 -17.36445 -16.86588 -16.44771 -15.93611 -15.52753 -14.83943 -14.79141 -14.51798 -14.34456 -13.92263 -13.88470 -13.54269 -13.18362 -12.85183 -12.66766 -12.48089 -12.23070 -12.14371 -11.87373 -11.69022 -11.62272 -11.37085 -11.18011 -11.16213 -11.02012 -10.91414 -10.70529 -10.47022 -10.32272 -9.65369 -9.35347 -9.10476 -9.05304 -8.37798 -6.58778 -6.27003 -3.98060 0.73379 0.83054 1.72655 2.05144 2.48908 3.19063 3.19202 3.26357 3.28990 3.52936 3.97480 4.17837 4.31022 4.51112 4.63194 4.67030 4.74009 4.82785 4.99831 5.07197 5.10193 5.14956 5.20870 5.34076 5.36298 5.38617 5.45184 5.46728 5.71003 5.74204 5.78385 5.87758 5.93002 6.05922 6.13053 6.34609 6.41393 6.41818 6.64147 7.57437 7.62816 8.33050 9.19617 10.81197 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.001724 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.837878 B =16236.850571 C =16400.982076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 H 0.119 0.881 4 C 0.463 3.537 5 O -0.501 6.501 6 O -0.352 6.352 7 C 0.073 3.927 8 C -0.097 4.097 9 C -0.115 4.115 10 S -0.124 6.124 11 C -0.518 4.518 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.869 5.869 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.279 1.279 19 C -0.064 4.064 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.037 4.037 24 Cl -0.072 7.072 25 C -0.099 4.099 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -0.378 29.804 29.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 H 0.137 0.863 4 C 0.305 3.695 5 O -0.388 6.388 6 O -0.268 6.268 7 C -0.002 4.002 8 C -0.136 4.136 9 C -0.263 4.263 10 S 0.104 5.896 11 C -0.666 4.666 12 H 0.092 0.908 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.064 4.064 20 C -0.098 4.098 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.063 4.063 24 Cl -0.043 7.043 25 C -0.117 4.117 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.359 0.410 29.563 29.597 hybrid contribution 1.569 -1.841 -0.649 2.505 sum 0.210 -1.431 28.914 28.950 Atomic orbital electron populations 1.21822 0.90593 1.03496 1.04087 1.19938 0.98751 1.00340 0.87157 0.86296 1.23394 0.77864 0.83113 0.85145 1.90696 1.35100 1.25693 1.87326 1.86467 1.69557 1.55942 1.14856 1.23291 0.99049 0.95448 0.82440 1.21283 1.02279 1.00276 0.89748 1.23181 1.02650 1.01954 0.98540 1.84651 1.68975 1.41264 0.94678 1.22740 1.36760 1.14921 0.92204 0.90784 1.25024 0.95171 0.95812 0.97793 1.70027 1.37214 1.27186 1.16027 0.86091 0.78963 0.80011 0.80329 1.19580 1.20535 1.20530 1.19249 0.98044 0.94464 0.94656 1.21075 0.98469 0.93622 0.96642 1.21103 0.97415 1.00206 0.93820 1.21092 0.98502 0.92652 1.00356 1.20822 0.98612 0.93628 0.93246 1.98377 1.67919 1.77964 1.60031 1.20892 0.97330 1.00557 0.92965 0.90136 0.91732 0.90688 0.91158 0.91148 0.90324 0.90334 0.91745 0.91753 0.92289 0.85473 0.84849 0.84905 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.94 37.16 0.33 -0.60 16 2 C -0.04 -0.35 3.00 -92.93 -0.28 -0.63 16 3 H 0.12 0.77 7.88 -51.93 -0.41 0.36 16 4 C 0.46 5.53 7.12 36.01 0.26 5.79 16 5 O -0.50 -7.34 14.86 -18.75 -0.28 -7.62 16 6 O -0.35 -4.53 10.12 -39.26 -0.40 -4.93 16 7 C 0.07 1.01 5.47 37.16 0.20 1.22 16 8 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 9 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 10 S -0.12 -3.18 21.44 -107.50 -2.30 -5.49 16 11 C -0.52 -14.71 9.50 30.94 0.29 -14.41 16 12 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 14 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 15 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C -0.06 -0.56 4.40 -104.63 -0.46 -1.02 16 20 C -0.08 -0.70 7.93 -39.58 -0.31 -1.02 16 21 C -0.11 -0.82 10.05 -39.59 -0.40 -1.22 16 22 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 23 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 24 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.08 16 25 C -0.10 -0.83 9.46 -39.55 -0.37 -1.20 16 26 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 27 H 0.06 0.43 7.39 -51.93 -0.38 0.04 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 1.08 7.52 -52.48 -0.39 0.68 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.14 0.91 7.95 -52.49 -0.42 0.50 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -32.27 366.29 -10.04 -42.31 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.37 Total: -2.40 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.41 Total: -16.72 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.73 Total: -24.96 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.68 Total: -12.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.49 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.27 -10.04 -42.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805467153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.324 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds