Wall clock time and date at job start Tue Mar 31 2020 15:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47160 * 2 1 4 4 C 1.50700 * 109.46955 * 240.00572 * 2 1 3 5 5 O 1.20828 * 119.99860 * 239.99775 * 4 2 1 6 6 O 1.34229 * 120.00264 * 59.99372 * 4 2 1 7 7 C 1.45201 * 117.00270 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47504 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47471 * 179.97438 * 8 7 6 10 10 S 1.80996 * 109.47076 * 179.97438 * 9 8 7 11 11 C 1.76201 * 99.99861 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00168 * 0.02562 * 11 10 9 13 13 C 1.38802 * 120.00317 * 180.02562 * 11 10 9 14 14 N 1.31629 * 119.99592 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00462 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46990 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47132 * 119.99952 * 15 13 11 18 18 H 1.48497 * 109.47040 * 240.00145 * 15 13 11 19 19 C 1.50694 * 109.47601 * 120.00371 * 2 1 3 20 20 C 1.38265 * 119.99277 * 60.01776 * 19 2 1 21 21 C 1.38216 * 120.02667 * 180.02562 * 20 19 2 22 22 C 1.38234 * 120.01494 * 359.96105 * 21 20 19 23 23 C 1.38328 * 119.98526 * 359.76620 * 22 21 20 24 24 Cl 1.73604 * 120.01692 * 180.27839 * 23 22 21 25 25 C 1.38195 * 119.99579 * 240.00382 * 19 2 1 26 26 H 1.08998 * 109.47475 * 59.99441 * 1 2 3 27 27 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47012 * 299.99784 * 1 2 3 29 29 H 1.09004 * 109.47256 * 300.00456 * 7 6 4 30 30 H 1.08997 * 109.46966 * 60.00142 * 7 6 4 31 31 H 1.09004 * 109.46807 * 300.00206 * 8 7 6 32 32 H 1.08997 * 109.47322 * 59.99834 * 8 7 6 33 33 H 1.08994 * 109.47202 * 300.00468 * 9 8 7 34 34 H 1.09007 * 109.46448 * 59.99829 * 9 8 7 35 35 H 0.97005 * 120.00286 * 180.02562 * 14 13 11 36 36 H 1.08007 * 119.98705 * 359.97438 * 20 19 2 37 37 H 1.08001 * 119.99346 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00805 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.00237 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7269 -1.6927 -1.1198 6 8 1.7079 -0.2517 -2.4497 7 6 2.2275 -0.9855 -3.5898 8 6 1.7563 -0.3183 -4.8835 9 6 2.3043 -1.0911 -6.0849 10 16 1.7462 -0.3022 -7.6153 11 6 2.4997 -1.3663 -8.8004 12 1 3.0936 -2.2062 -8.4715 13 6 2.3299 -1.1252 -10.1567 14 7 1.6065 -0.1012 -10.5576 15 14 3.1281 -2.2537 -11.4132 16 1 3.8823 -3.3225 -10.7101 17 1 2.0779 -2.8679 -12.2646 18 1 4.0582 -1.4684 -12.2636 19 6 2.0324 -0.7104 1.2303 20 6 1.6987 -2.0343 1.4487 21 6 2.1587 -2.6864 2.5772 22 6 2.9534 -2.0156 3.4878 23 6 3.2923 -0.6928 3.2670 24 17 4.2963 0.1483 4.4065 25 6 2.8269 -0.0388 2.1400 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.3170 -0.9843 -3.5568 30 1 1.8641 -2.0126 -3.5571 31 1 0.6668 -0.3191 -4.9167 32 1 2.1200 0.7087 -4.9160 33 1 3.3938 -1.0899 -6.0514 34 1 1.9409 -2.1183 -6.0525 35 1 1.4875 0.0671 -11.5055 36 1 1.0776 -2.5588 0.7376 37 1 1.8973 -3.7204 2.7475 38 1 3.3132 -2.5255 4.3694 39 1 3.0873 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805467153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:48 Heat of formation + Delta-G solvation = -107.884932 kcal Electronic energy + Delta-G solvation = -21655.331549 eV Core-core repulsion = 18099.587190 eV Total energy + Delta-G solvation = -3555.744359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87194 -40.26692 -37.95251 -37.41389 -35.41939 -34.79092 -34.57172 -31.82795 -30.55699 -28.25600 -27.51268 -25.84757 -23.76370 -23.59082 -22.67795 -21.25409 -19.57979 -18.65720 -18.18910 -17.86077 -17.35991 -16.90729 -16.59828 -16.37212 -15.99837 -15.89504 -15.10128 -15.01208 -14.52487 -14.50104 -14.34439 -14.08865 -13.81357 -13.50073 -13.21759 -13.09080 -12.97040 -12.82703 -12.62438 -12.50749 -12.40916 -12.40229 -12.26186 -12.21989 -11.76867 -11.62156 -11.51214 -11.31034 -11.16700 -10.36511 -9.95820 -9.67719 -8.68492 -8.39053 -6.15316 0.10492 0.22559 1.09903 1.12396 1.28186 1.38064 1.44119 1.53615 1.85288 2.26165 2.63953 2.95587 3.27426 3.33172 3.61038 3.83386 3.85029 3.98103 3.99957 4.11812 4.14734 4.15442 4.22099 4.31966 4.42841 4.50988 4.66217 4.68211 4.81820 4.85831 4.92146 5.01531 5.11478 5.18003 5.24408 5.33760 5.39525 5.43368 5.45525 5.77803 6.17215 6.65886 7.03730 8.70469 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.001724 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.837878 B =16236.850571 C =16400.982076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 H 0.140 0.860 4 C 0.463 3.537 5 O -0.530 6.530 6 O -0.352 6.352 7 C 0.081 3.919 8 C -0.085 4.085 9 C -0.092 4.092 10 S -0.183 6.183 11 C -0.541 4.541 12 H 0.073 0.927 13 C 0.016 3.984 14 N -0.906 5.906 15 Si 0.994 3.006 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.074 4.074 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.048 4.048 24 Cl -0.072 7.072 25 C -0.105 4.105 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.272 0.728 36 H 0.125 0.875 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 -0.951 30.875 30.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.158 0.842 4 C 0.307 3.693 5 O -0.419 6.419 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.124 4.124 9 C -0.241 4.241 10 S 0.045 5.955 11 C -0.688 4.688 12 H 0.092 0.908 13 C -0.189 4.189 14 N -0.542 5.542 15 Si 0.816 3.184 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.075 4.075 24 Cl -0.043 7.043 25 C -0.124 4.124 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.067 -0.152 30.650 30.669 hybrid contribution 1.472 -1.661 -0.855 2.379 sum 0.405 -1.813 29.795 29.853 Atomic orbital electron populations 1.21837 0.89187 1.03656 1.04988 1.20061 0.99775 1.00744 0.84960 0.84194 1.24156 0.77020 0.82772 0.85378 1.90685 1.36547 1.27130 1.87539 1.86464 1.69554 1.55785 1.15057 1.23010 0.98967 0.95318 0.82170 1.21098 1.02239 0.99835 0.89201 1.23073 1.02697 1.01913 0.96445 1.84612 1.69827 1.42816 0.98218 1.23091 1.37111 1.15294 0.93352 0.90842 1.26054 0.95555 0.97364 0.99944 1.70147 1.38427 1.28896 1.16750 0.84967 0.78120 0.77921 0.77370 1.18760 1.19635 1.19678 1.19338 0.98483 0.94664 0.94914 1.21229 0.98885 0.93945 0.97153 1.21367 0.96978 1.01165 0.93329 1.21344 0.98174 0.92533 1.00886 1.20993 0.98909 0.94096 0.93481 1.98375 1.67920 1.77991 1.59988 1.21073 0.97107 1.01297 0.92894 0.90145 0.91994 0.88828 0.91137 0.90851 0.90059 0.90236 0.91497 0.91378 0.91890 0.85666 0.82886 0.83304 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.94 71.98 0.64 -0.93 16 2 C -0.04 -0.55 3.00 -12.29 -0.04 -0.58 16 3 H 0.14 1.49 7.88 -2.38 -0.02 1.47 16 4 C 0.46 10.50 7.12 71.24 0.51 11.01 16 5 O -0.53 -15.13 14.86 21.96 0.33 -14.81 16 6 O -0.35 -8.58 10.12 -51.41 -0.52 -9.11 16 7 C 0.08 2.16 5.47 71.98 0.39 2.55 16 8 C -0.09 -2.62 5.60 30.59 0.17 -2.45 16 9 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 10 S -0.18 -9.56 21.44 -56.49 -1.21 -10.77 16 11 C -0.54 -30.92 9.50 67.95 0.65 -30.27 16 12 H 0.07 4.06 7.80 -2.91 -0.02 4.03 16 13 C 0.02 0.90 5.49 84.86 0.47 1.37 16 14 N -0.91 -54.07 13.22 21.65 0.29 -53.79 16 15 Si 0.99 43.64 29.55 68.60 2.03 45.66 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 C -0.07 -1.20 4.40 -19.87 -0.09 -1.28 16 20 C -0.09 -1.56 7.93 22.27 0.18 -1.38 16 21 C -0.11 -1.54 10.05 22.26 0.22 -1.32 16 22 C -0.11 -1.56 9.83 22.29 0.22 -1.34 16 23 C -0.05 -0.76 6.32 22.32 0.14 -0.62 16 24 Cl -0.07 -1.08 28.96 -2.72 -0.08 -1.16 16 25 C -0.11 -1.62 9.46 22.29 0.21 -1.41 16 26 H 0.08 0.93 8.11 -2.39 -0.02 0.91 16 27 H 0.06 0.73 7.39 -2.38 -0.02 0.72 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 30 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.24 16 36 H 0.13 2.05 7.52 -2.91 -0.02 2.02 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.15 1.75 7.95 -2.91 -0.02 1.73 16 Total: -1.00 -69.22 366.29 5.96 -63.26 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.04 Total: 10.54 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.08 Total: -29.84 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.29 Total: -53.79 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.19 Total: -23.91 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.21 Total: -10.77 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -69.22 5.96 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805467153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.623 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds