Wall clock time and date at job start Tue Mar 31 2020 14:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.99601 * 2 1 4 4 C 1.38216 * 120.02599 * 179.72584 * 3 2 1 5 5 C 1.38240 * 120.01429 * 0.54711 * 4 3 2 6 6 C 1.50703 * 120.00679 * 179.74905 * 5 4 3 7 7 C 1.50701 * 109.47064 * 264.72351 * 6 5 4 8 8 O 1.20826 * 119.99939 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00046 * 179.97438 * 7 6 5 10 10 C 1.45192 * 117.00018 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47278 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.47241 * 179.97438 * 12 11 10 14 14 C 1.76202 * 99.99769 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99554 * 180.02562 * 14 13 12 17 17 N 1.31635 * 119.99624 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00164 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47141 * 90.00275 * 18 16 14 20 20 H 1.48499 * 109.46931 * 209.99860 * 18 16 14 21 21 H 1.48498 * 109.46812 * 330.00118 * 18 16 14 22 22 C 1.38328 * 119.98397 * 359.47484 * 5 4 3 23 23 Cl 1.73602 * 120.01166 * 180.27197 * 22 5 4 24 24 C 1.38194 * 119.99153 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47166 * 269.98122 * 1 2 3 26 26 H 1.09004 * 109.46889 * 29.97517 * 1 2 3 27 27 H 1.08999 * 109.47506 * 149.97875 * 1 2 3 28 28 H 1.07996 * 119.98317 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.99282 * 180.30012 * 4 3 2 30 30 H 1.09002 * 109.47152 * 144.72444 * 6 5 4 31 31 H 1.09001 * 109.46980 * 24.72544 * 6 5 4 32 32 H 1.09001 * 109.47630 * 300.00318 * 10 9 7 33 33 H 1.08998 * 109.47321 * 60.00129 * 10 9 7 34 34 H 1.09005 * 109.47066 * 299.99718 * 11 10 9 35 35 H 1.08998 * 109.47698 * 59.99951 * 11 10 9 36 36 H 1.09001 * 109.47487 * 299.99960 * 12 11 10 37 37 H 1.09008 * 109.47307 * 59.99683 * 12 11 10 38 38 H 0.96995 * 119.99567 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.00645 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 0.0057 5 6 4.2725 0.0016 0.0000 6 6 5.7796 0.0026 0.0006 7 6 6.2825 -0.1207 -1.4147 8 8 5.4977 -0.2007 -2.3299 9 8 7.6023 -0.1406 -1.6587 10 6 8.0145 -0.2610 -3.0456 11 6 9.5424 -0.2670 -3.1249 12 6 9.9768 -0.3931 -4.5865 13 16 11.7844 -0.3995 -4.6803 14 6 11.9998 -0.5494 -6.4226 15 1 11.1375 -0.6065 -7.0704 16 6 13.2777 -0.5953 -6.9625 17 7 13.4386 -0.7078 -8.2641 18 14 14.7691 -0.4973 -5.8420 19 1 15.1653 -1.8663 -5.4244 20 1 15.8939 0.1431 -6.5699 21 1 14.4337 0.3090 -4.6409 22 6 3.5815 -1.1967 -0.0004 23 17 4.4500 -2.6999 -0.0004 24 6 2.1978 -1.1969 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6579 2.1326 0.0004 29 1 4.1198 2.1339 0.0106 30 1 6.1433 -0.8391 0.5900 31 1 6.1421 0.9342 0.4352 32 1 7.6258 -1.1908 -3.4609 33 1 7.6241 0.5824 -3.6152 34 1 9.9314 0.6627 -2.7096 35 1 9.9325 -1.1106 -2.5554 36 1 9.5878 -1.3226 -5.0023 37 1 9.5868 0.4508 -5.1556 38 1 14.3317 -0.7394 -8.6414 39 1 1.6577 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805495552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:18 Heat of formation + Delta-G solvation = -94.623846 kcal Electronic energy + Delta-G solvation = -21598.694447 eV Core-core repulsion = 18043.525132 eV Total energy + Delta-G solvation = -3555.169315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77481 -39.71640 -36.88946 -36.77872 -34.29957 -33.59514 -32.45893 -31.18689 -30.43429 -27.03002 -25.85882 -25.42019 -23.29247 -22.07737 -21.42240 -20.75881 -17.88454 -17.37452 -16.98052 -16.96627 -16.28929 -16.15456 -15.70504 -15.01041 -14.78023 -14.50217 -14.25303 -14.20935 -13.49021 -13.34481 -13.27587 -12.93455 -12.79997 -12.77861 -12.46131 -12.27885 -12.04822 -11.67435 -11.63274 -11.53671 -11.21075 -11.13413 -11.09630 -10.98214 -10.69928 -10.35451 -10.25219 -9.83049 -9.25374 -9.02819 -8.96818 -8.61909 -6.98556 -6.30297 -4.03654 0.67073 0.82152 1.76652 2.10876 2.48715 2.99235 3.23998 3.28940 3.43587 3.56199 4.05398 4.26276 4.29433 4.41737 4.60806 4.63756 4.75836 4.82231 4.91732 4.99989 5.04740 5.08811 5.12505 5.14069 5.15810 5.28486 5.39086 5.40138 5.58677 5.67855 5.71861 5.77339 5.90363 6.04225 6.05122 6.33153 6.35017 6.40410 6.57322 7.66726 7.93346 8.42699 9.15025 10.79095 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.001880 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.716643 B =14889.409835 C =15057.858108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C -0.115 4.115 4 C -0.087 4.087 5 C -0.073 4.073 6 C -0.079 4.079 7 C 0.463 3.537 8 O -0.498 6.498 9 O -0.355 6.355 10 C 0.073 3.927 11 C -0.101 4.101 12 C -0.084 4.084 13 S -0.206 6.206 14 C -0.505 4.505 15 H 0.089 0.911 16 C 0.092 3.908 17 N -0.880 5.880 18 Si 0.862 3.138 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.238 1.238 22 C -0.014 4.014 23 Cl -0.064 7.064 24 C -0.111 4.111 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.271 0.729 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.977 2.372 22.371 33.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.134 4.134 4 C -0.106 4.106 5 C -0.074 4.074 6 C -0.117 4.117 7 C 0.305 3.695 8 O -0.385 6.385 9 O -0.272 6.272 10 C -0.002 4.002 11 C -0.139 4.139 12 C -0.233 4.233 13 S 0.022 5.978 14 C -0.652 4.652 15 H 0.107 0.893 16 C -0.117 4.117 17 N -0.517 5.517 18 Si 0.687 3.313 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.162 1.162 22 C -0.040 4.040 23 Cl -0.035 7.035 24 C -0.130 4.130 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.189 2.263 22.703 33.251 hybrid contribution -0.025 -0.292 -1.036 1.077 sum -24.214 1.971 21.666 32.552 Atomic orbital electron populations 1.20820 0.90363 1.03322 1.02673 1.19903 0.96493 0.92413 0.98367 1.21105 0.93931 0.97940 1.00377 1.20991 0.94331 0.96900 0.98341 1.19113 0.93870 0.92168 1.02275 1.20324 0.91775 1.07200 0.92385 1.23306 0.81053 0.73209 0.91975 1.90698 1.56764 1.44519 1.46545 1.86454 1.25023 1.83260 1.32489 1.23223 0.96211 1.02632 0.78121 1.21329 0.91380 1.04339 0.96883 1.22950 0.99397 1.04174 0.96745 1.84157 1.02449 1.96938 1.14298 1.22127 0.97096 1.58078 0.87936 0.89302 1.24798 0.98608 0.93312 0.94936 1.69940 1.23501 1.47790 1.10450 0.86668 0.82515 0.79976 0.82169 1.19325 1.20040 1.16150 1.20779 0.92554 0.86776 1.03907 1.98387 1.76642 1.31771 1.96703 1.20899 0.91638 0.98876 1.01591 0.90747 0.91071 0.91177 0.85169 0.84855 0.86341 0.86235 0.91014 0.91013 0.90251 0.90254 0.91020 0.90981 0.91929 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.01 36.00 0.36 -0.17 16 2 C -0.07 -0.52 5.88 -104.63 -0.62 -1.13 16 3 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 4 C -0.09 -0.69 9.68 -39.59 -0.38 -1.07 16 5 C -0.07 -0.69 4.38 -104.59 -0.46 -1.14 16 6 C -0.08 -0.70 5.46 -29.03 -0.16 -0.85 16 7 C 0.46 5.81 7.95 36.01 0.29 6.10 16 8 O -0.50 -7.71 15.78 -18.75 -0.30 -8.01 16 9 O -0.36 -4.73 10.22 -39.26 -0.40 -5.13 16 10 C 0.07 1.03 5.47 37.16 0.20 1.23 16 11 C -0.10 -1.56 5.60 -26.73 -0.15 -1.71 16 12 C -0.08 -1.62 5.67 37.16 0.21 -1.41 16 13 S -0.21 -4.99 19.41 -107.50 -2.09 -7.08 16 14 C -0.50 -14.64 10.04 30.94 0.31 -14.33 16 15 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 16 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 17 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 18 Si 0.86 21.45 27.74 -169.99 -4.71 16.73 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 22 C -0.01 -0.13 6.31 -39.50 -0.25 -0.38 16 23 Cl -0.06 -0.65 27.40 -51.86 -1.42 -2.07 16 24 C -0.11 -0.94 9.49 -39.55 -0.38 -1.31 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 29 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 30 H 0.12 0.92 7.13 -51.93 -0.37 0.55 16 31 H 0.12 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 37 H 0.07 1.38 8.14 -51.91 -0.42 0.95 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -33.30 365.45 -9.57 -42.87 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.43 Total: -2.10 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.50 Total: -14.80 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.78 Total: -25.92 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.70 Total: -13.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.09 Total: -7.08 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.30 -9.57 -42.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805495552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.753 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds