Wall clock time and date at job start Tue Mar 31 2020 14:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38267 * 119.99601 * 2 1 4 4 C 1.38216 * 120.02599 * 179.72584 * 3 2 1 5 5 C 1.38240 * 120.01429 * 0.54711 * 4 3 2 6 6 C 1.50703 * 120.00679 * 179.74905 * 5 4 3 7 7 C 1.50701 * 109.47064 * 264.72351 * 6 5 4 8 8 O 1.20826 * 119.99939 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00046 * 179.97438 * 7 6 5 10 10 C 1.45192 * 117.00018 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47278 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.47241 * 179.97438 * 12 11 10 14 14 C 1.76202 * 99.99769 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99554 * 180.02562 * 14 13 12 17 17 N 1.31635 * 119.99624 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00164 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47141 * 90.00275 * 18 16 14 20 20 H 1.48499 * 109.46931 * 209.99860 * 18 16 14 21 21 H 1.48498 * 109.46812 * 330.00118 * 18 16 14 22 22 C 1.38328 * 119.98397 * 359.47484 * 5 4 3 23 23 Cl 1.73602 * 120.01166 * 180.27197 * 22 5 4 24 24 C 1.38194 * 119.99153 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47166 * 269.98122 * 1 2 3 26 26 H 1.09004 * 109.46889 * 29.97517 * 1 2 3 27 27 H 1.08999 * 109.47506 * 149.97875 * 1 2 3 28 28 H 1.07996 * 119.98317 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.99282 * 180.30012 * 4 3 2 30 30 H 1.09002 * 109.47152 * 144.72444 * 6 5 4 31 31 H 1.09001 * 109.46980 * 24.72544 * 6 5 4 32 32 H 1.09001 * 109.47630 * 300.00318 * 10 9 7 33 33 H 1.08998 * 109.47321 * 60.00129 * 10 9 7 34 34 H 1.09005 * 109.47066 * 299.99718 * 11 10 9 35 35 H 1.08998 * 109.47698 * 59.99951 * 11 10 9 36 36 H 1.09001 * 109.47487 * 299.99960 * 12 11 10 37 37 H 1.09008 * 109.47307 * 59.99683 * 12 11 10 38 38 H 0.96995 * 119.99567 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.00645 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1982 0.0057 5 6 4.2725 0.0016 0.0000 6 6 5.7796 0.0026 0.0006 7 6 6.2825 -0.1207 -1.4147 8 8 5.4977 -0.2007 -2.3299 9 8 7.6023 -0.1406 -1.6587 10 6 8.0145 -0.2610 -3.0456 11 6 9.5424 -0.2670 -3.1249 12 6 9.9768 -0.3931 -4.5865 13 16 11.7844 -0.3995 -4.6803 14 6 11.9998 -0.5494 -6.4226 15 1 11.1375 -0.6065 -7.0704 16 6 13.2777 -0.5953 -6.9625 17 7 13.4386 -0.7078 -8.2641 18 14 14.7691 -0.4973 -5.8420 19 1 15.1653 -1.8663 -5.4244 20 1 15.8939 0.1431 -6.5699 21 1 14.4337 0.3090 -4.6409 22 6 3.5815 -1.1967 -0.0004 23 17 4.4500 -2.6999 -0.0004 24 6 2.1978 -1.1969 -0.0005 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6579 2.1326 0.0004 29 1 4.1198 2.1339 0.0106 30 1 6.1433 -0.8391 0.5900 31 1 6.1421 0.9342 0.4352 32 1 7.6258 -1.1908 -3.4609 33 1 7.6241 0.5824 -3.6152 34 1 9.9314 0.6627 -2.7096 35 1 9.9325 -1.1106 -2.5554 36 1 9.5878 -1.3226 -5.0023 37 1 9.5868 0.4508 -5.1556 38 1 14.3317 -0.7394 -8.6414 39 1 1.6577 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805495552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:17 Heat of formation + Delta-G solvation = -111.505685 kcal Electronic energy + Delta-G solvation = -21599.426499 eV Core-core repulsion = 18043.525132 eV Total energy + Delta-G solvation = -3555.901367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70238 -40.39793 -37.87680 -37.55206 -35.04047 -34.80525 -34.68808 -31.75976 -31.05056 -28.29433 -27.75602 -26.38387 -23.86836 -23.03086 -22.57711 -21.53444 -19.65214 -18.75894 -17.93966 -17.77953 -17.13883 -17.07082 -16.92078 -16.34431 -16.00362 -15.97014 -14.97759 -14.89190 -14.79376 -14.36997 -14.34153 -14.12872 -13.86910 -13.59366 -13.48496 -13.34763 -13.05658 -12.88332 -12.64846 -12.62442 -12.40254 -12.27257 -12.24804 -12.19009 -11.83250 -11.78376 -11.55152 -11.53140 -11.17391 -10.61974 -9.84754 -9.56399 -9.01754 -8.52882 -6.25273 0.05804 0.23641 1.05713 1.09009 1.14487 1.32652 1.45292 1.53321 1.85756 2.24206 2.61285 2.65881 2.85087 3.41666 3.70914 3.72790 3.81399 3.93810 3.94828 4.09826 4.10639 4.26719 4.27021 4.35746 4.49027 4.49502 4.60210 4.63588 4.78702 4.84118 4.89757 4.97474 5.08183 5.16566 5.22815 5.32922 5.42909 5.51848 5.68450 5.84668 6.09287 6.67273 6.90507 8.60177 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.001880 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.716643 B =14889.409835 C =15057.858108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.093 4.093 5 C -0.092 4.092 6 C -0.074 4.074 7 C 0.463 3.537 8 O -0.531 6.531 9 O -0.355 6.355 10 C 0.079 3.921 11 C -0.087 4.087 12 C -0.075 4.075 13 S -0.204 6.204 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.037 3.963 17 N -0.922 5.922 18 Si 0.927 3.073 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.226 1.226 22 C -0.033 4.033 23 Cl -0.078 7.078 24 C -0.126 4.126 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.277 0.723 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.490 3.501 24.801 35.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.093 4.093 6 C -0.111 4.111 7 C 0.307 3.693 8 O -0.420 6.420 9 O -0.272 6.272 10 C 0.003 3.997 11 C -0.126 4.126 12 C -0.223 4.223 13 S 0.024 5.976 14 C -0.675 4.675 15 H 0.069 0.931 16 C -0.168 4.168 17 N -0.559 5.559 18 Si 0.748 3.252 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.149 1.149 22 C -0.059 4.059 23 Cl -0.049 7.049 24 C -0.144 4.144 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.172 0.828 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.713 3.392 25.144 35.418 hybrid contribution -0.063 -0.631 -1.812 1.920 sum -24.776 2.761 23.332 34.145 Atomic orbital electron populations 1.20879 0.88517 1.03984 1.03677 1.20268 0.97924 0.92081 0.97240 1.21476 0.93936 0.98927 0.99405 1.21326 0.94953 0.97201 0.97648 1.19288 0.94174 0.92537 1.03291 1.20455 0.91618 1.09177 0.89811 1.24080 0.80226 0.71823 0.93187 1.90686 1.57280 1.46138 1.47891 1.86452 1.25832 1.83342 1.31542 1.22987 0.95094 1.02596 0.78978 1.21148 0.92390 1.05073 0.93948 1.22979 0.95578 1.04101 0.99657 1.83785 1.06954 1.96938 1.09943 1.22361 0.96249 1.58108 0.90752 0.93140 1.25813 1.01811 0.92674 0.96496 1.70044 1.24708 1.48736 1.12458 0.85696 0.78585 0.80511 0.80445 1.18568 1.18710 1.14947 1.21015 0.93181 0.86553 1.05164 1.98373 1.76985 1.32677 1.96858 1.21126 0.91421 0.99914 1.01971 0.89465 0.90001 0.90952 0.82721 0.82837 0.85500 0.83038 0.91411 0.90851 0.89328 0.89655 0.91295 0.91018 0.91361 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 71.23 0.71 -0.11 16 2 C -0.07 -0.97 5.88 -19.87 -0.12 -1.08 16 3 C -0.12 -1.43 9.70 22.27 0.22 -1.22 16 4 C -0.09 -1.28 9.68 22.27 0.22 -1.07 16 5 C -0.09 -1.60 4.38 -19.84 -0.09 -1.68 16 6 C -0.07 -1.16 5.46 29.10 0.16 -1.00 16 7 C 0.46 11.02 7.95 71.24 0.57 11.59 16 8 O -0.53 -16.13 15.78 21.97 0.35 -15.78 16 9 O -0.35 -8.84 10.22 -51.41 -0.53 -9.37 16 10 C 0.08 2.13 5.47 71.98 0.39 2.52 16 11 C -0.09 -2.53 5.60 30.59 0.17 -2.36 16 12 C -0.07 -2.82 5.67 71.98 0.41 -2.41 16 13 S -0.20 -9.71 19.41 -56.49 -1.10 -10.81 16 14 C -0.53 -31.15 10.04 67.96 0.68 -30.47 16 15 H 0.05 3.25 8.03 -2.91 -0.02 3.23 16 16 C 0.04 2.17 5.50 84.86 0.47 2.64 16 17 N -0.92 -56.91 13.97 21.65 0.30 -56.61 16 18 Si 0.93 43.82 27.74 68.60 1.90 45.73 16 19 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.23 -10.20 6.74 99.48 0.67 -9.53 16 22 C -0.03 -0.62 6.31 22.32 0.14 -0.48 16 23 Cl -0.08 -1.57 27.40 -2.72 -0.07 -1.65 16 24 C -0.13 -2.03 9.49 22.29 0.21 -1.82 16 25 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.08 0.42 8.09 -2.39 -0.02 0.40 16 27 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 28 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.13 1.78 7.13 -2.39 -0.02 1.76 16 31 H 0.15 1.34 8.05 -2.39 -0.02 1.32 16 32 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 34 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -72.59 365.45 6.01 -66.59 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.01 Total: 8.85 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 4.14 Total: -26.96 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.30 Total: -56.61 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.18 Total: -25.14 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.73 kcal Atomic # 16 Polarization: -9.71 SS G_CDS: -1.10 Total: -10.81 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.65 kcal Total: -72.59 6.01 -66.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805495552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.918 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds