Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47195 * 239.99729 * 3 2 1 5 5 H 1.48502 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46965 * 120.00235 * 3 2 1 7 7 C 1.38801 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99430 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00276 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.45206 * 109.46777 * 180.02562 * 12 11 10 14 14 C 1.34823 * 117.00107 * 179.97438 * 13 12 11 15 15 O 1.21579 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.47002 * 120.00078 * 179.97438 * 14 13 12 17 17 C 1.35144 * 122.48982 * 179.73491 * 16 14 13 18 18 S 1.76185 * 108.24815 * 179.91482 * 17 16 14 19 19 C 1.76040 * 90.18483 * 0.29146 * 18 17 16 20 20 N 1.38460 * 125.17317 * 179.84799 * 19 18 17 21 21 C 1.46500 * 120.00254 * 359.97438 * 20 19 18 22 22 C 1.52998 * 117.49809 * 223.74581 * 21 20 19 23 23 C 1.52993 * 117.50169 * 155.08371 * 21 20 19 24 24 N 1.29415 * 109.65489 * 359.83097 * 19 18 17 25 25 H 0.96995 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 60.00135 * 10 9 7 27 27 H 1.08996 * 109.47323 * 300.00385 * 10 9 7 28 28 H 1.09000 * 109.46866 * 60.00101 * 11 10 9 29 29 H 1.09001 * 109.46611 * 300.00218 * 11 10 9 30 30 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 31 31 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 32 32 H 1.08000 * 125.87428 * 359.97438 * 17 16 14 33 33 H 0.96997 * 119.99696 * 179.97438 * 20 19 18 34 34 H 1.09004 * 115.54657 * 9.41023 * 21 20 19 35 35 H 1.09004 * 117.49720 * 359.97438 * 22 21 20 36 36 H 1.09003 * 117.50006 * 145.01310 * 22 21 20 37 37 H 1.08996 * 117.49854 * 214.97635 * 23 21 20 38 38 H 1.08998 * 117.49781 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9792 -5.3244 -0.0036 12 6 3.1512 -6.3078 -0.0038 13 8 2.6420 -7.6676 -0.0050 14 6 3.5523 -8.6621 -0.0059 15 8 4.7394 -8.3996 -0.0062 16 6 3.1095 -10.0639 -0.0066 17 6 3.9778 -11.0995 -0.0128 18 16 3.0501 -12.5973 -0.0089 19 6 1.5505 -11.6752 -0.0081 20 7 0.2783 -12.2215 -0.0082 21 6 0.1058 -13.6763 -0.0096 22 6 -0.9513 -14.2614 -0.9482 23 6 -1.1994 -14.2336 0.5620 24 7 1.8181 -10.4090 -0.0070 25 1 -0.4850 0.8400 0.0004 26 1 3.1243 -3.7322 0.8872 27 1 3.1244 -3.7306 -0.8927 28 1 1.3703 -5.4839 -0.8935 29 1 1.3708 -5.4848 0.8865 30 1 3.7598 -6.1481 0.8863 31 1 3.7599 -6.1474 -0.8937 32 1 5.0550 -11.0221 -0.0181 33 1 -0.4988 -11.6410 -0.0073 34 1 1.0140 -14.2576 0.1503 35 1 -1.5187 -13.5639 -1.5644 36 1 -0.7388 -15.2278 -1.4056 37 1 -1.1500 -15.1816 1.0976 38 1 -1.9299 -13.5177 0.9387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805505904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = -18.297336 kcal Electronic energy + Delta-G solvation = -21205.748330 eV Core-core repulsion = 17688.225238 eV Total energy + Delta-G solvation = -3517.523092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72191 -39.45839 -38.33875 -36.64200 -34.05333 -33.39447 -32.41577 -29.79870 -27.18544 -25.68733 -25.04479 -23.05262 -22.95955 -22.60298 -21.26728 -20.05126 -19.12259 -17.72681 -17.38923 -16.62747 -16.59371 -16.51515 -16.36828 -15.28682 -15.07703 -14.79543 -14.42039 -14.39618 -13.75742 -13.57073 -13.28526 -12.86541 -12.69088 -12.42819 -12.30092 -12.18549 -12.05635 -11.30395 -11.23142 -11.09425 -10.93691 -10.93429 -10.76360 -10.62608 -10.50882 -10.21499 -10.08126 -9.68102 -9.61275 -9.04283 -8.32131 -8.22786 -6.53047 -6.21865 -3.92667 0.23861 0.56640 1.07189 1.66537 2.21513 2.71613 2.97257 3.20773 3.24172 3.24988 3.29426 3.57655 4.04274 4.11434 4.21590 4.23229 4.24398 4.77482 4.94801 4.97025 5.01629 5.13819 5.18411 5.23601 5.26391 5.36746 5.43952 5.46166 5.55238 5.83221 5.94495 6.07555 6.20362 6.41740 6.51154 6.71457 6.73965 7.28636 7.61442 7.74260 8.37383 9.24215 10.86248 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.001833 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.409964 B =15272.982697 C =16465.091147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.114 4.114 11 C -0.097 4.097 12 C 0.071 3.929 13 O -0.330 6.330 14 C 0.542 3.458 15 O -0.501 6.501 16 C 0.079 3.921 17 C -0.206 4.206 18 S 0.087 5.913 19 C 0.349 3.651 20 N -0.661 5.661 21 C 0.079 3.921 22 C -0.189 4.189 23 C -0.182 4.182 24 N -0.508 5.508 25 H 0.268 0.732 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.193 0.807 33 H 0.419 0.581 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -33.415 -0.091 33.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.135 4.135 12 C -0.004 4.004 13 O -0.246 6.246 14 C 0.383 3.617 15 O -0.390 6.390 16 C -0.051 4.051 17 C -0.349 4.349 18 S 0.335 5.665 19 C -0.025 4.025 20 N -0.300 5.300 21 C -0.028 4.028 22 C -0.228 4.228 23 C -0.220 4.220 24 N -0.233 5.233 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.210 0.790 33 H 0.258 0.742 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.636 -34.190 -0.084 34.196 hybrid contribution 1.921 2.435 -0.004 3.101 sum 2.556 -31.756 -0.088 31.858 Atomic orbital electron populations 1.70010 1.05920 1.27481 1.47103 1.25018 0.95097 0.99101 0.94559 0.86204 0.79216 0.81124 0.78871 1.19916 1.20813 1.19921 1.22666 0.94577 0.90733 1.58709 0.90888 1.84659 1.08839 0.99149 1.96875 1.23182 1.03393 0.96346 1.03337 1.21270 0.96425 0.91404 1.04430 1.23351 0.97906 0.76507 1.02679 1.86678 1.38743 1.16425 1.82708 1.19865 0.83890 0.84926 0.73015 1.90894 1.17494 1.84414 1.46178 1.18826 0.87074 0.92292 1.06924 1.26780 1.04955 0.92632 1.10494 1.84901 0.97987 1.09289 1.74318 1.24073 0.91018 0.89776 0.97659 1.43226 1.02536 1.05130 1.79119 1.21623 0.95494 0.79660 1.06034 1.23560 1.02481 1.03383 0.93361 1.23468 0.98478 1.03460 0.96612 1.66657 1.18260 1.13269 1.25108 0.92222 0.91718 0.91711 0.90299 0.90302 0.90981 0.90991 0.79032 0.74164 0.85273 0.87850 0.87485 0.87336 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 9 S -0.12 -3.27 21.44 -107.50 -2.30 -5.58 16 10 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 11 C -0.10 -1.68 5.60 -26.73 -0.15 -1.83 16 12 C 0.07 1.11 5.48 37.16 0.20 1.31 16 13 O -0.33 -5.33 10.14 -40.83 -0.41 -5.74 16 14 C 0.54 8.25 7.93 34.28 0.27 8.52 16 15 O -0.50 -8.21 16.46 -19.33 -0.32 -8.53 16 16 C 0.08 1.03 6.67 -84.62 -0.56 0.46 16 17 C -0.21 -2.05 10.84 29.63 0.32 -1.72 16 18 S 0.09 0.65 21.92 -107.50 -2.36 -1.71 16 19 C 0.35 3.33 8.42 -88.05 -0.74 2.59 16 20 N -0.66 -4.55 5.72 -54.53 -0.31 -4.86 16 21 C 0.08 0.34 6.47 -67.93 -0.44 -0.10 16 22 C -0.19 -0.61 10.46 -26.69 -0.28 -0.89 16 23 C -0.18 -0.55 10.46 -26.70 -0.28 -0.83 16 24 N -0.51 -6.50 10.52 -10.62 -0.11 -6.61 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 27 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.19 1.59 8.01 -52.49 -0.42 1.17 16 33 H 0.42 2.70 8.95 -40.82 -0.37 2.34 16 34 H 0.13 0.46 6.96 -51.93 -0.36 0.10 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -34.04 364.71 -10.78 -44.81 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.92 Total: -1.15 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.25 Total: -7.41 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.31 Total: -36.91 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.73 Total: -14.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -4.66 Total: -7.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.04 -10.78 -44.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805505904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.516 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds