Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48496 * 109.47195 * 239.99729 * 3 2 1 5 5 H 1.48502 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46965 * 120.00235 * 3 2 1 7 7 C 1.38801 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99430 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00539 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00276 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47387 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.45206 * 109.46777 * 180.02562 * 12 11 10 14 14 C 1.34823 * 117.00107 * 179.97438 * 13 12 11 15 15 O 1.21579 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.47002 * 120.00078 * 179.97438 * 14 13 12 17 17 C 1.35144 * 122.48982 * 179.73491 * 16 14 13 18 18 S 1.76185 * 108.24815 * 179.91482 * 17 16 14 19 19 C 1.76040 * 90.18483 * 0.29146 * 18 17 16 20 20 N 1.38460 * 125.17317 * 179.84799 * 19 18 17 21 21 C 1.46500 * 120.00254 * 359.97438 * 20 19 18 22 22 C 1.52998 * 117.49809 * 223.74581 * 21 20 19 23 23 C 1.52993 * 117.50169 * 155.08371 * 21 20 19 24 24 N 1.29415 * 109.65489 * 359.83097 * 19 18 17 25 25 H 0.96995 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 60.00135 * 10 9 7 27 27 H 1.08996 * 109.47323 * 300.00385 * 10 9 7 28 28 H 1.09000 * 109.46866 * 60.00101 * 11 10 9 29 29 H 1.09001 * 109.46611 * 300.00218 * 11 10 9 30 30 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 31 31 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 32 32 H 1.08000 * 125.87428 * 359.97438 * 17 16 14 33 33 H 0.96997 * 119.99696 * 179.97438 * 20 19 18 34 34 H 1.09004 * 115.54657 * 9.41023 * 21 20 19 35 35 H 1.09004 * 117.49720 * 359.97438 * 22 21 20 36 36 H 1.09003 * 117.50006 * 145.01310 * 22 21 20 37 37 H 1.08996 * 117.49854 * 214.97635 * 23 21 20 38 38 H 1.08998 * 117.49781 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9792 -5.3244 -0.0036 12 6 3.1512 -6.3078 -0.0038 13 8 2.6420 -7.6676 -0.0050 14 6 3.5523 -8.6621 -0.0059 15 8 4.7394 -8.3996 -0.0062 16 6 3.1095 -10.0639 -0.0066 17 6 3.9778 -11.0995 -0.0128 18 16 3.0501 -12.5973 -0.0089 19 6 1.5505 -11.6752 -0.0081 20 7 0.2783 -12.2215 -0.0082 21 6 0.1058 -13.6763 -0.0096 22 6 -0.9513 -14.2614 -0.9482 23 6 -1.1994 -14.2336 0.5620 24 7 1.8181 -10.4090 -0.0070 25 1 -0.4850 0.8400 0.0004 26 1 3.1243 -3.7322 0.8872 27 1 3.1244 -3.7306 -0.8927 28 1 1.3703 -5.4839 -0.8935 29 1 1.3708 -5.4848 0.8865 30 1 3.7598 -6.1481 0.8863 31 1 3.7599 -6.1474 -0.8937 32 1 5.0550 -11.0221 -0.0181 33 1 -0.4988 -11.6410 -0.0073 34 1 1.0140 -14.2576 0.1503 35 1 -1.5187 -13.5639 -1.5644 36 1 -0.7388 -15.2278 -1.4056 37 1 -1.1500 -15.1816 1.0976 38 1 -1.9299 -13.5177 0.9387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805505904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = -38.630890 kcal Electronic energy + Delta-G solvation = -21206.630059 eV Core-core repulsion = 17688.225238 eV Total energy + Delta-G solvation = -3518.404821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77565 -40.28067 -38.81191 -37.84429 -34.93269 -34.60407 -34.53423 -30.56423 -28.52609 -27.68352 -26.21986 -23.72874 -23.28885 -23.13199 -22.72332 -21.01678 -19.90635 -19.52017 -18.53725 -17.84036 -17.61776 -17.28857 -16.90028 -16.85731 -16.29425 -16.19322 -15.61126 -15.39144 -15.06849 -14.48586 -14.20562 -14.15051 -13.84397 -13.80640 -13.15395 -13.06721 -12.98962 -12.93021 -12.65255 -12.42728 -12.42355 -12.40842 -12.01679 -11.55149 -11.52835 -11.44863 -11.14241 -11.06809 -10.82423 -10.37198 -10.32640 -8.83305 -8.69228 -8.38073 -6.15247 -0.56432 -0.09726 0.30784 0.74359 1.27515 1.41343 1.42947 1.51046 1.70072 1.92377 2.03409 2.27033 2.90638 2.96230 3.21302 3.32384 3.74686 3.82309 3.90938 3.94659 3.98870 3.99364 4.08323 4.16095 4.31252 4.43979 4.54892 4.65847 4.73550 4.80873 4.98954 5.04946 5.05508 5.22549 5.28557 5.39279 5.58193 6.10969 6.17359 6.43635 6.78230 7.03864 8.71159 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.001833 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.409964 B =15272.982697 C =16465.091147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.075 0.925 9 S -0.187 6.187 10 C -0.090 4.090 11 C -0.085 4.085 12 C 0.078 3.922 13 O -0.342 6.342 14 C 0.541 3.459 15 O -0.521 6.521 16 C 0.047 3.953 17 C -0.204 4.204 18 S 0.168 5.832 19 C 0.335 3.665 20 N -0.657 5.657 21 C 0.060 3.940 22 C -0.183 4.183 23 C -0.173 4.173 24 N -0.550 5.550 25 H 0.272 0.728 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.206 0.794 33 H 0.418 0.582 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.796 -35.321 -0.071 35.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.093 0.907 9 S 0.042 5.958 10 C -0.239 4.239 11 C -0.123 4.123 12 C 0.002 3.998 13 O -0.257 6.257 14 C 0.384 3.616 15 O -0.411 6.411 16 C -0.083 4.083 17 C -0.347 4.347 18 S 0.417 5.583 19 C -0.040 4.040 20 N -0.295 5.295 21 C -0.045 4.045 22 C -0.222 4.222 23 C -0.212 4.212 24 N -0.277 5.277 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.257 0.743 34 H 0.157 0.843 35 H 0.116 0.884 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.665 -36.151 -0.065 36.189 hybrid contribution 1.553 2.786 -0.013 3.189 sum 3.219 -33.365 -0.078 33.520 Atomic orbital electron populations 1.70146 1.07686 1.28690 1.47793 1.26089 0.96068 1.03157 0.93683 0.85042 0.77906 0.75954 0.79364 1.18913 1.19915 1.18922 1.23033 0.94890 0.91849 1.59143 0.90665 1.84669 1.13180 1.00905 1.97076 1.23055 1.00784 0.96199 1.03854 1.21079 0.96993 0.90022 1.04226 1.23151 0.96781 0.76441 1.03383 1.86663 1.39443 1.16600 1.83039 1.20300 0.83547 0.85588 0.72206 1.90864 1.17988 1.84805 1.47420 1.18657 0.88044 0.91470 1.10098 1.27145 1.05800 0.93638 1.08140 1.84591 0.94994 1.06095 1.72654 1.24357 0.92675 0.89784 0.97145 1.43468 1.01732 1.06245 1.78054 1.21900 0.96612 0.78270 1.07756 1.23617 1.01407 1.03704 0.93517 1.23546 0.97158 1.03828 0.96649 1.66578 1.18544 1.15335 1.27206 0.91897 0.91111 0.91106 0.90548 0.90548 0.90294 0.90312 0.77728 0.74294 0.84296 0.88437 0.86000 0.85768 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.40 29.55 68.60 2.03 46.43 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 8 H 0.08 4.21 7.80 -2.90 -0.02 4.19 16 9 S -0.19 -10.14 21.44 -56.49 -1.21 -11.35 16 10 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 11 C -0.08 -2.95 5.60 30.60 0.17 -2.78 16 12 C 0.08 2.41 5.48 71.98 0.39 2.81 16 13 O -0.34 -11.17 10.14 -57.35 -0.58 -11.75 16 14 C 0.54 16.63 7.93 70.12 0.56 17.18 16 15 O -0.52 -17.07 16.46 19.58 0.32 -16.74 16 16 C 0.05 1.22 6.67 40.45 0.27 1.49 16 17 C -0.20 -3.79 10.84 67.11 0.73 -3.07 16 18 S 0.17 2.11 21.92 -56.49 -1.24 0.87 16 19 C 0.33 6.07 8.42 179.45 1.51 7.58 16 20 N -0.66 -8.41 5.72 -326.43 -1.87 -10.28 16 21 C 0.06 0.41 6.47 44.99 0.29 0.70 16 22 C -0.18 -0.82 10.46 30.62 0.32 -0.50 16 23 C -0.17 -0.70 10.46 30.62 0.32 -0.38 16 24 N -0.55 -14.09 10.52 -187.50 -1.97 -16.07 16 25 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.07 2.83 8.14 -2.40 -0.02 2.81 16 27 H 0.07 2.83 8.14 -2.40 -0.02 2.81 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 32 H 0.21 3.08 8.01 -2.91 -0.02 3.06 16 33 H 0.42 5.29 8.95 -92.71 -0.83 4.46 16 34 H 0.14 0.62 6.96 -2.39 -0.02 0.61 16 35 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -74.35 364.71 2.11 -72.24 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.26 Total: 11.64 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 6.08 Total: -9.96 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.55 Total: -81.37 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.26 Total: -28.50 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -2.45 Total: -10.48 kcal Total: -74.35 2.11 -72.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805505904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.604 kcal (2) G-P(sol) polarization free energy of solvation -74.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds