Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00380 * 2 1 4 4 H 1.48498 * 109.47649 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46925 * 300.00204 * 3 2 1 6 6 H 1.48495 * 109.47263 * 59.99728 * 3 2 1 7 7 C 1.38809 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47079 * 179.97438 * 12 11 10 14 14 C 1.34952 * 116.99562 * 180.02562 * 13 12 11 15 15 O 1.21674 * 120.00467 * 359.97438 * 14 13 12 16 16 C 1.41738 * 119.99346 * 180.02562 * 14 13 12 17 17 C 1.36831 * 126.11251 * 179.71668 * 16 14 13 18 18 N 1.30816 * 114.01542 * 179.78087 * 17 16 14 19 19 C 1.30267 * 117.27624 * 0.51853 * 18 17 16 20 20 N 1.37800 * 124.74576 * 179.70148 * 19 18 17 21 21 C 1.46501 * 119.99596 * 0.02562 * 20 19 18 22 22 C 1.53002 * 117.49483 * 223.73885 * 21 20 19 23 23 C 1.53003 * 117.49780 * 155.08304 * 21 20 19 24 24 S 1.70927 * 110.51484 * 359.71176 * 19 18 17 25 25 H 0.96995 * 119.99998 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47381 * 59.99644 * 10 9 7 27 27 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 28 28 H 1.09004 * 109.47298 * 59.99902 * 11 10 9 29 29 H 1.09004 * 109.47552 * 299.99773 * 11 10 9 30 30 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 31 31 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 32 32 H 1.08001 * 122.99264 * 359.97438 * 17 16 14 33 33 H 0.97001 * 120.00238 * 180.02562 * 20 19 18 34 34 H 1.08996 * 115.54964 * 9.40864 * 21 20 19 35 35 H 1.09001 * 117.49931 * 0.02562 * 22 21 20 36 36 H 1.09003 * 117.49462 * 145.01925 * 22 21 20 37 37 H 1.09001 * 117.49910 * 214.97495 * 23 21 20 38 38 H 1.08996 * 117.49739 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6500 -7.6461 0.0050 14 6 3.5613 -8.6415 0.0059 15 8 4.7493 -8.3788 0.0052 16 6 3.1343 -9.9930 0.0066 17 6 3.9454 -11.0950 0.0020 18 7 3.2987 -12.2321 0.0084 19 6 1.9971 -12.1786 0.0076 20 7 1.1659 -13.2777 0.0078 21 6 1.7361 -14.6272 0.0095 22 6 1.1087 -15.6604 -0.9285 23 6 0.8768 -15.7565 0.5815 24 16 1.4643 -10.5545 0.0059 25 1 -0.4850 0.8400 -0.0004 26 1 3.1245 -3.7306 0.8927 27 1 3.1244 -3.7322 -0.8872 28 1 1.3708 -5.4848 -0.8865 29 1 1.3703 -5.4839 0.8935 30 1 3.7600 -6.1473 0.8937 31 1 3.7598 -6.1481 -0.8863 32 1 5.0235 -11.0317 -0.0031 33 1 0.2033 -13.1579 0.0067 34 1 2.8126 -14.6825 0.1714 35 1 0.2720 -15.3359 -1.5472 36 1 1.7725 -16.3956 -1.3834 37 1 1.3879 -16.5550 1.1193 38 1 -0.1126 -15.4953 0.9568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805506575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = -20.799334 kcal Electronic energy + Delta-G solvation = -21094.956406 eV Core-core repulsion = 17577.324819 eV Total energy + Delta-G solvation = -3517.631587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74008 -39.97634 -38.31077 -36.69258 -34.25550 -33.44197 -32.43252 -30.31494 -26.80468 -25.71148 -25.30141 -23.55747 -23.01706 -22.01946 -21.30231 -20.03450 -19.48148 -17.72477 -17.42406 -17.12974 -16.71517 -16.28217 -16.14034 -15.41589 -14.93323 -14.81022 -14.64554 -14.50207 -14.13594 -13.48172 -13.28489 -12.91292 -12.72752 -12.44256 -12.18537 -12.13291 -11.83687 -11.30752 -11.14699 -11.13043 -10.96002 -10.88907 -10.75369 -10.61365 -10.39596 -10.20581 -10.12215 -9.76083 -9.60729 -9.07374 -8.33671 -8.23382 -6.54987 -6.23956 -3.94585 -0.01199 0.52084 1.26589 2.08966 2.41878 2.73944 2.88304 3.21422 3.24168 3.25953 3.30859 3.58581 3.87650 4.17915 4.21119 4.28885 4.39237 4.82531 5.00187 5.01032 5.10235 5.12189 5.17300 5.25811 5.27329 5.41742 5.44031 5.53916 5.59343 5.81550 5.93907 6.18391 6.19941 6.37333 6.47781 6.48306 6.70567 7.35406 7.60610 7.73010 8.36314 9.22696 10.84310 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.037129 B = 0.001707 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.941985 B =16395.019020 C =17054.322443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.074 0.926 9 S -0.125 6.125 10 C -0.114 4.114 11 C -0.097 4.097 12 C 0.073 3.927 13 O -0.351 6.351 14 C 0.551 3.449 15 O -0.509 6.509 16 C -0.343 4.343 17 C 0.198 3.802 18 N -0.554 5.554 19 C 0.322 3.678 20 N -0.652 5.652 21 C 0.090 3.910 22 C -0.192 4.192 23 C -0.188 4.188 24 S 0.194 5.806 25 H 0.267 0.733 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.419 0.581 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -32.456 -0.031 32.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.103 5.897 10 C -0.263 4.263 11 C -0.135 4.135 12 C -0.002 4.002 13 O -0.268 6.268 14 C 0.396 3.604 15 O -0.400 6.400 16 C -0.467 4.467 17 C 0.037 3.963 18 N -0.279 5.279 19 C -0.045 4.045 20 N -0.287 5.287 21 C -0.018 4.018 22 C -0.232 4.232 23 C -0.227 4.227 24 S 0.446 5.554 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.209 0.791 33 H 0.257 0.743 34 H 0.161 0.839 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.463 -32.581 -0.024 32.585 hybrid contribution 2.459 1.437 -0.021 2.848 sum 1.996 -31.145 -0.044 31.208 Atomic orbital electron populations 1.70028 1.05929 1.27277 1.47287 1.25019 0.95089 0.99119 0.94541 0.86095 0.79683 0.81766 0.77886 1.19564 1.20556 1.20551 1.22751 0.94650 0.90678 1.58486 0.90771 1.84637 1.08910 0.99268 1.96875 1.23180 1.03364 0.96336 1.03381 1.21286 0.96411 0.91598 1.04228 1.22877 0.97869 0.76908 1.02593 1.86156 1.39654 1.16819 1.84152 1.17996 0.84262 0.84597 0.73505 1.90907 1.17262 1.84516 1.47322 1.23372 0.95933 0.96428 1.30999 1.22218 1.01300 0.83275 0.89521 1.66272 1.04140 1.29921 1.27539 1.24043 0.91750 0.93352 0.95393 1.43332 1.06951 1.01454 1.76994 1.21780 0.98345 0.77374 1.04328 1.23509 1.04100 1.02395 0.93167 1.23457 1.01851 1.00817 0.96589 1.84364 1.05996 0.94722 1.70295 0.92324 0.91702 0.91708 0.90404 0.90398 0.91300 0.91291 0.79077 0.74323 0.83859 0.88317 0.87648 0.87505 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.07 2.07 7.80 -52.49 -0.41 1.66 16 9 S -0.13 -3.27 21.44 -107.50 -2.30 -5.57 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 C -0.10 -1.62 5.59 -26.73 -0.15 -1.77 16 12 C 0.07 1.11 5.38 37.16 0.20 1.31 16 13 O -0.35 -5.19 9.91 -41.19 -0.41 -5.60 16 14 C 0.55 7.92 7.73 32.07 0.25 8.17 16 15 O -0.51 -8.37 16.55 -19.40 -0.32 -8.69 16 16 C -0.34 -4.02 6.32 -38.75 -0.25 -4.26 16 17 C 0.20 2.07 11.08 -18.49 -0.20 1.86 16 18 N -0.55 -5.49 9.70 -14.75 -0.14 -5.63 16 19 C 0.32 2.68 8.05 -87.99 -0.71 1.97 16 20 N -0.65 -3.62 5.69 -55.89 -0.32 -3.93 16 21 C 0.09 0.44 6.53 -67.93 -0.44 0.00 16 22 C -0.19 -0.67 10.46 -26.69 -0.28 -0.95 16 23 C -0.19 -0.59 10.46 -26.69 -0.28 -0.87 16 24 S 0.19 1.74 22.99 -107.50 -2.47 -0.73 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.19 1.71 8.04 -52.49 -0.42 1.29 16 33 H 0.42 1.34 8.95 -40.82 -0.37 0.98 16 34 H 0.14 0.87 7.57 -51.93 -0.39 0.48 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -33.76 364.68 -11.16 -44.92 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.95 Total: -2.33 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.45 Total: -9.29 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.27 Total: -34.79 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.73 Total: -14.29 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -4.78 Total: -6.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.76 -11.16 -44.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805506575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.124 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds