Wall clock time and date at job start Tue Mar 31 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00380 * 2 1 4 4 H 1.48498 * 109.47649 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46925 * 300.00204 * 3 2 1 6 6 H 1.48495 * 109.47263 * 59.99728 * 3 2 1 7 7 C 1.38809 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47079 * 179.97438 * 12 11 10 14 14 C 1.34952 * 116.99562 * 180.02562 * 13 12 11 15 15 O 1.21674 * 120.00467 * 359.97438 * 14 13 12 16 16 C 1.41738 * 119.99346 * 180.02562 * 14 13 12 17 17 C 1.36831 * 126.11251 * 179.71668 * 16 14 13 18 18 N 1.30816 * 114.01542 * 179.78087 * 17 16 14 19 19 C 1.30267 * 117.27624 * 0.51853 * 18 17 16 20 20 N 1.37800 * 124.74576 * 179.70148 * 19 18 17 21 21 C 1.46501 * 119.99596 * 0.02562 * 20 19 18 22 22 C 1.53002 * 117.49483 * 223.73885 * 21 20 19 23 23 C 1.53003 * 117.49780 * 155.08304 * 21 20 19 24 24 S 1.70927 * 110.51484 * 359.71176 * 19 18 17 25 25 H 0.96995 * 119.99998 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47381 * 59.99644 * 10 9 7 27 27 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 28 28 H 1.09004 * 109.47298 * 59.99902 * 11 10 9 29 29 H 1.09004 * 109.47552 * 299.99773 * 11 10 9 30 30 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 31 31 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 32 32 H 1.08001 * 122.99264 * 359.97438 * 17 16 14 33 33 H 0.97001 * 120.00238 * 180.02562 * 20 19 18 34 34 H 1.08996 * 115.54964 * 9.40864 * 21 20 19 35 35 H 1.09001 * 117.49931 * 0.02562 * 22 21 20 36 36 H 1.09003 * 117.49462 * 145.01925 * 22 21 20 37 37 H 1.09001 * 117.49910 * 214.97495 * 23 21 20 38 38 H 1.08996 * 117.49739 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6500 -7.6461 0.0050 14 6 3.5613 -8.6415 0.0059 15 8 4.7493 -8.3788 0.0052 16 6 3.1343 -9.9930 0.0066 17 6 3.9454 -11.0950 0.0020 18 7 3.2987 -12.2321 0.0084 19 6 1.9971 -12.1786 0.0076 20 7 1.1659 -13.2777 0.0078 21 6 1.7361 -14.6272 0.0095 22 6 1.1087 -15.6604 -0.9285 23 6 0.8768 -15.7565 0.5815 24 16 1.4643 -10.5545 0.0059 25 1 -0.4850 0.8400 -0.0004 26 1 3.1245 -3.7306 0.8927 27 1 3.1244 -3.7322 -0.8872 28 1 1.3708 -5.4848 -0.8865 29 1 1.3703 -5.4839 0.8935 30 1 3.7600 -6.1473 0.8937 31 1 3.7598 -6.1481 -0.8863 32 1 5.0235 -11.0317 -0.0031 33 1 0.2033 -13.1579 0.0067 34 1 2.8126 -14.6825 0.1714 35 1 0.2720 -15.3359 -1.5472 36 1 1.7725 -16.3956 -1.3834 37 1 1.3879 -16.5550 1.1193 38 1 -0.1126 -15.4953 0.9568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805506575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:52 Heat of formation + Delta-G solvation = -40.344499 kcal Electronic energy + Delta-G solvation = -21095.803948 eV Core-core repulsion = 17577.324819 eV Total energy + Delta-G solvation = -3518.479128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74514 -40.78986 -38.79887 -37.83027 -34.94234 -34.74751 -34.57396 -31.17411 -28.22799 -27.52607 -26.31226 -24.33143 -23.27228 -22.88616 -22.59657 -20.70232 -20.37426 -19.53037 -18.61757 -17.92290 -17.88260 -17.15235 -16.90004 -16.69405 -16.28838 -16.16987 -15.73126 -15.31719 -15.29494 -14.83826 -14.22867 -14.18241 -13.81437 -13.71651 -13.15757 -13.06180 -12.95816 -12.65182 -12.62037 -12.42192 -12.39582 -12.37082 -11.89815 -11.49162 -11.48928 -11.43667 -11.15851 -10.94905 -10.85879 -10.47960 -10.35886 -8.86267 -8.67811 -8.38278 -6.14583 -0.80202 -0.17817 0.50922 1.21982 1.28770 1.38777 1.45279 1.55474 1.85473 1.96470 1.97082 2.27215 2.94012 2.96381 3.26350 3.29629 3.79557 3.85174 3.87522 3.99586 4.00873 4.05817 4.10089 4.21215 4.33493 4.54112 4.60122 4.68747 4.78365 4.95091 5.01601 5.04074 5.10536 5.20797 5.38695 5.40551 5.63284 5.89866 6.18123 6.62886 6.68320 7.04450 8.71394 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.037129 B = 0.001707 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.941985 B =16395.019020 C =17054.322443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.074 0.926 9 S -0.183 6.183 10 C -0.092 4.092 11 C -0.084 4.084 12 C 0.081 3.919 13 O -0.354 6.354 14 C 0.553 3.447 15 O -0.539 6.539 16 C -0.382 4.382 17 C 0.214 3.786 18 N -0.570 5.570 19 C 0.330 3.670 20 N -0.634 5.634 21 C 0.064 3.936 22 C -0.184 4.184 23 C -0.173 4.173 24 S 0.211 5.789 25 H 0.272 0.728 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.201 0.799 33 H 0.431 0.569 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -33.999 -0.025 34.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.241 4.241 11 C -0.123 4.123 12 C 0.005 3.995 13 O -0.271 6.271 14 C 0.401 3.599 15 O -0.433 6.433 16 C -0.506 4.506 17 C 0.051 3.949 18 N -0.296 5.296 19 C -0.037 4.037 20 N -0.269 5.269 21 C -0.043 4.043 22 C -0.223 4.223 23 C -0.212 4.212 24 S 0.464 5.536 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.217 0.783 33 H 0.272 0.728 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.484 -34.178 -0.018 34.181 hybrid contribution 2.384 1.631 -0.024 2.889 sum 1.900 -32.547 -0.042 32.603 Atomic orbital electron populations 1.70149 1.07635 1.28557 1.47933 1.26052 0.96037 1.03053 0.93688 0.84961 0.78403 0.76655 0.78321 1.18762 1.19634 1.19625 1.23102 0.94866 0.91979 1.58950 0.90819 1.84601 1.13053 1.00775 1.97056 1.23069 1.00802 0.96500 1.03695 1.21105 0.96914 0.89837 1.04427 1.22645 0.96816 0.77113 1.02916 1.86135 1.39918 1.16629 1.84412 1.18300 0.83795 0.85146 0.72688 1.90880 1.18216 1.84954 1.49208 1.23251 0.97808 0.95363 1.34173 1.22417 1.01792 0.83111 0.87594 1.66351 1.04807 1.29565 1.28844 1.24228 0.91698 0.93956 0.93864 1.43523 1.07461 1.01205 1.74704 1.21887 0.98267 0.77272 1.06893 1.23568 1.03940 1.01273 0.93568 1.23539 1.01787 0.99428 0.96418 1.84207 1.04083 0.94581 1.70747 0.91891 0.91323 0.91330 0.90238 0.90232 0.91035 0.91023 0.78283 0.72828 0.85117 0.87722 0.87100 0.86692 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.62 13.22 21.65 0.29 -54.33 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 0.99 44.13 29.55 68.60 2.03 46.15 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.39 9.50 67.96 0.65 -30.74 16 8 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.18 -9.75 21.44 -56.49 -1.21 -10.96 16 10 C -0.09 -3.70 5.67 71.98 0.41 -3.30 16 11 C -0.08 -2.78 5.59 30.59 0.17 -2.61 16 12 C 0.08 2.41 5.38 71.98 0.39 2.80 16 13 O -0.35 -10.37 9.91 -58.69 -0.58 -10.95 16 14 C 0.55 15.92 7.73 68.69 0.53 16.45 16 15 O -0.54 -17.90 16.55 19.27 0.32 -17.58 16 16 C -0.38 -8.84 6.32 22.81 0.14 -8.70 16 17 C 0.21 4.37 11.08 84.51 0.94 5.31 16 18 N -0.57 -10.76 9.70 -200.59 -1.95 -12.71 16 19 C 0.33 5.05 8.05 179.43 1.44 6.50 16 20 N -0.63 -5.79 5.69 -330.73 -1.88 -7.67 16 21 C 0.06 0.51 6.53 44.99 0.29 0.81 16 22 C -0.18 -0.84 10.46 30.62 0.32 -0.52 16 23 C -0.17 -0.63 10.46 30.62 0.32 -0.31 16 24 S 0.21 3.60 22.99 -56.49 -1.30 2.30 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.07 2.10 8.13 -2.38 -0.02 2.08 16 31 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 32 H 0.20 3.53 8.04 -2.91 -0.02 3.50 16 33 H 0.43 1.73 8.95 -92.71 -0.83 0.90 16 34 H 0.13 1.44 7.57 -2.39 -0.02 1.42 16 35 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -72.74 364.68 2.04 -70.69 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.26 Total: 7.96 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 6.07 Total: -12.90 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -3.54 Total: -74.71 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.26 Total: -28.53 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -2.51 Total: -8.66 kcal Total: -72.74 2.04 -70.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805506575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.350 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds