Wall clock time and date at job start Tue Mar 31 2020 14:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00207 * 2 1 4 4 N 1.46498 * 109.46769 * 125.00304 * 3 2 1 5 5 C 1.37804 * 119.99782 * 179.72178 * 4 3 2 6 6 N 1.30264 * 124.74365 * 0.30780 * 5 4 3 7 7 C 1.30817 * 117.28081 * 179.97438 * 6 5 4 8 8 C 1.36833 * 114.01266 * 359.97438 * 7 6 5 9 9 C 1.41730 * 126.11720 * 179.97438 * 8 7 6 10 10 O 1.21684 * 119.99863 * 359.97438 * 9 8 7 11 11 O 1.34949 * 120.00381 * 180.02562 * 9 8 7 12 12 C 1.42900 * 117.00183 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47066 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47070 * 179.97438 * 13 12 11 15 15 S 1.80999 * 109.46832 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99886 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99713 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99990 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47410 * 89.99947 * 20 18 16 22 22 H 1.48502 * 109.47026 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47046 * 329.99719 * 20 18 16 24 24 S 1.70917 * 124.74141 * 179.97438 * 5 4 3 25 25 H 1.08008 * 119.99728 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00364 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99918 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47210 * 5.00662 * 3 2 1 29 29 H 1.08994 * 109.47121 * 245.00632 * 3 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 31 31 H 1.07998 * 122.99540 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47089 * 299.99293 * 12 11 9 33 33 H 1.08994 * 109.47167 * 59.99684 * 12 11 9 34 34 H 1.09001 * 109.47288 * 300.00071 * 13 12 11 35 35 H 1.09009 * 109.46919 * 59.99636 * 13 12 11 36 36 H 1.08995 * 109.47485 * 299.99949 * 14 13 12 37 37 H 1.09002 * 109.46611 * 60.00613 * 14 13 12 38 38 H 0.97002 * 119.99329 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 3.8005 2.4304 1.3344 6 7 3.8079 3.4948 0.5835 7 6 4.6346 4.4542 0.9114 8 6 5.3855 4.1863 2.0235 9 6 6.3565 5.0415 2.6018 10 8 6.5846 6.1279 2.1032 11 8 7.0289 4.6507 3.7046 12 6 7.9927 5.5632 4.2342 13 6 8.6471 4.9509 5.4743 14 6 9.6795 5.9276 6.0410 15 16 10.4541 5.2029 7.5076 16 6 11.5639 6.5012 7.9405 17 1 11.6017 7.4007 7.3440 18 6 12.3903 6.3675 9.0477 19 7 12.3445 5.2709 9.7744 20 14 13.5673 7.7436 9.5062 21 1 12.8911 8.6845 10.4349 22 1 14.7658 7.1696 10.1690 23 1 13.9809 8.4707 8.2792 24 16 4.9254 2.5903 2.6112 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6212 1.4026 -0.9314 30 1 3.0451 0.5742 1.7351 31 1 4.7171 5.3755 0.3540 32 1 8.7555 5.7631 3.4818 33 1 7.4986 6.4955 4.5074 34 1 7.8841 4.7512 6.2267 35 1 9.1411 4.0183 5.2014 36 1 10.4425 6.1269 5.2886 37 1 9.1857 6.8603 6.3138 38 1 12.9218 5.1777 10.5484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805508541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:13 Heat of formation + Delta-G solvation = -28.156742 kcal Electronic energy + Delta-G solvation = -20973.281837 eV Core-core repulsion = 17455.331209 eV Total energy + Delta-G solvation = -3517.950628 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71071 -39.89275 -37.36520 -36.58629 -33.91596 -33.43148 -32.42742 -30.43922 -27.48762 -26.58442 -25.51398 -24.76469 -22.60703 -21.30340 -20.99280 -19.84691 -19.42746 -17.69879 -17.37181 -17.03917 -16.70919 -16.34919 -15.99134 -15.57345 -14.95358 -14.80571 -14.64723 -14.47859 -14.07857 -13.92136 -13.38699 -13.19934 -12.73743 -12.70935 -12.12520 -11.84837 -11.77985 -11.29658 -11.12039 -10.98539 -10.92269 -10.89630 -10.74263 -10.61794 -10.28211 -10.20002 -10.02885 -9.74417 -9.60851 -9.06042 -8.33545 -8.26148 -6.54433 -6.23271 -3.94014 0.02891 0.54607 1.29886 1.44653 2.13494 2.64790 2.78883 2.91393 3.22786 3.24437 3.30293 3.59144 4.01251 4.16900 4.21761 4.41238 4.85106 4.89553 5.02058 5.09422 5.12812 5.17353 5.18202 5.26931 5.42389 5.50036 5.55142 5.82317 5.85469 5.92666 5.95322 6.18796 6.20544 6.41571 6.49033 6.49430 6.71356 7.38673 7.60800 7.74732 8.36596 9.23232 10.84914 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035393 B = 0.001678 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.933563 B =16682.432187 C =17403.986578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.184 4.184 3 C 0.157 3.843 4 N -0.678 5.678 5 C 0.319 3.681 6 N -0.556 5.556 7 C 0.199 3.801 8 C -0.344 4.344 9 C 0.551 3.449 10 O -0.510 6.510 11 O -0.351 6.351 12 C 0.073 3.927 13 C -0.097 4.097 14 C -0.114 4.114 15 S -0.125 6.125 16 C -0.518 4.518 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.870 5.870 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 S 0.190 5.810 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.419 0.581 31 H 0.192 0.808 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.466 -11.357 -20.062 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.202 4.202 3 C 0.033 3.967 4 N -0.316 5.316 5 C -0.049 4.049 6 N -0.281 5.281 7 C 0.037 3.963 8 C -0.468 4.468 9 C 0.397 3.603 10 O -0.401 6.401 11 O -0.268 6.268 12 C -0.002 4.002 13 C -0.135 4.135 14 C -0.263 4.263 15 S 0.103 5.897 16 C -0.666 4.666 17 H 0.092 0.908 18 C -0.137 4.137 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 S 0.442 5.558 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.257 0.743 31 H 0.209 0.791 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.650 -12.827 -19.235 33.073 hybrid contribution 1.123 2.625 -0.564 2.911 sum -22.527 -10.202 -19.799 31.678 Atomic orbital electron populations 1.24045 0.95740 1.02701 0.96993 1.22982 0.96291 0.97992 1.02969 1.20551 0.91311 0.95909 0.88977 1.43985 1.39905 1.15772 1.31899 1.24120 0.94366 0.91426 0.94941 1.66298 1.27970 1.01570 1.32307 1.22214 0.86379 0.96818 0.90866 1.23356 1.13632 1.01615 1.08228 1.18003 0.79229 0.84458 0.78654 1.90908 1.65167 1.22063 1.61960 1.86154 1.50771 1.48567 1.41278 1.22869 0.89432 0.91791 0.96148 1.21286 0.98088 0.99451 0.94703 1.23181 0.99728 1.00855 1.02502 1.84635 1.48408 1.28199 1.28416 1.22705 1.24436 1.03682 1.15793 0.90834 1.25012 0.96896 0.96556 0.95262 1.70022 1.38101 1.25704 1.16697 0.86152 0.79676 0.80926 0.78708 1.20247 1.20741 1.19650 1.84357 1.32662 1.13295 1.25500 0.87988 0.87628 0.86465 0.90551 0.90134 0.74319 0.79148 0.91307 0.91317 0.90399 0.90402 0.91708 0.91709 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.42 14.32 29.01 0.42 -0.01 16 2 C -0.18 -0.56 9.63 -36.03 -0.35 -0.90 16 3 C 0.16 0.73 6.36 -5.19 -0.03 0.70 16 4 N -0.68 -3.68 5.67 -63.59 -0.36 -4.04 16 5 C 0.32 2.67 8.05 -87.99 -0.71 1.96 16 6 N -0.56 -5.58 10.06 -14.75 -0.15 -5.73 16 7 C 0.20 2.10 11.08 -18.49 -0.20 1.89 16 8 C -0.34 -4.08 6.32 -38.76 -0.25 -4.32 16 9 C 0.55 7.99 7.73 32.07 0.25 8.24 16 10 O -0.51 -8.45 16.55 -19.41 -0.32 -8.77 16 11 O -0.35 -5.23 9.91 -41.18 -0.41 -5.64 16 12 C 0.07 1.12 5.38 37.16 0.20 1.32 16 13 C -0.10 -1.63 5.59 -26.73 -0.15 -1.78 16 14 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 15 S -0.12 -3.27 21.44 -107.50 -2.30 -5.57 16 16 C -0.52 -14.91 9.50 30.94 0.29 -14.62 16 17 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 18 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 20 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 S 0.19 1.73 22.99 -107.50 -2.47 -0.74 16 25 H 0.10 0.26 7.84 -52.48 -0.41 -0.15 16 26 H 0.11 0.18 8.06 -52.49 -0.42 -0.24 16 27 H 0.12 0.25 8.06 -52.49 -0.42 -0.17 16 28 H 0.08 0.41 7.79 -51.93 -0.40 0.00 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.42 1.34 8.59 -40.82 -0.35 0.99 16 31 H 0.19 1.74 8.04 -52.49 -0.42 1.31 16 32 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 37 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -33.89 367.27 -10.12 -44.01 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.94 Total: -2.73 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.42 Total: -7.67 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.22 Total: -35.01 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.73 Total: -14.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -4.78 Total: -6.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.89 -10.12 -44.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805508541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.851 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds