Wall clock time and date at job start Tue Mar 31 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00207 * 2 1 4 4 N 1.46498 * 109.46769 * 125.00304 * 3 2 1 5 5 C 1.37804 * 119.99782 * 179.72178 * 4 3 2 6 6 N 1.30264 * 124.74365 * 0.30780 * 5 4 3 7 7 C 1.30817 * 117.28081 * 179.97438 * 6 5 4 8 8 C 1.36833 * 114.01266 * 359.97438 * 7 6 5 9 9 C 1.41730 * 126.11720 * 179.97438 * 8 7 6 10 10 O 1.21684 * 119.99863 * 359.97438 * 9 8 7 11 11 O 1.34949 * 120.00381 * 180.02562 * 9 8 7 12 12 C 1.42900 * 117.00183 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47066 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47070 * 179.97438 * 13 12 11 15 15 S 1.80999 * 109.46832 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99886 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99713 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99990 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99847 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47410 * 89.99947 * 20 18 16 22 22 H 1.48502 * 109.47026 * 210.00260 * 20 18 16 23 23 H 1.48506 * 109.47046 * 329.99719 * 20 18 16 24 24 S 1.70917 * 124.74141 * 179.97438 * 5 4 3 25 25 H 1.08008 * 119.99728 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00364 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99918 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47210 * 5.00662 * 3 2 1 29 29 H 1.08994 * 109.47121 * 245.00632 * 3 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 31 31 H 1.07998 * 122.99540 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47089 * 299.99293 * 12 11 9 33 33 H 1.08994 * 109.47167 * 59.99684 * 12 11 9 34 34 H 1.09001 * 109.47288 * 300.00071 * 13 12 11 35 35 H 1.09009 * 109.46919 * 59.99636 * 13 12 11 36 36 H 1.08995 * 109.47485 * 299.99949 * 14 13 12 37 37 H 1.09002 * 109.46611 * 60.00613 * 14 13 12 38 38 H 0.97002 * 119.99329 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 3.8005 2.4304 1.3344 6 7 3.8079 3.4948 0.5835 7 6 4.6346 4.4542 0.9114 8 6 5.3855 4.1863 2.0235 9 6 6.3565 5.0415 2.6018 10 8 6.5846 6.1279 2.1032 11 8 7.0289 4.6507 3.7046 12 6 7.9927 5.5632 4.2342 13 6 8.6471 4.9509 5.4743 14 6 9.6795 5.9276 6.0410 15 16 10.4541 5.2029 7.5076 16 6 11.5639 6.5012 7.9405 17 1 11.6017 7.4007 7.3440 18 6 12.3903 6.3675 9.0477 19 7 12.3445 5.2709 9.7744 20 14 13.5673 7.7436 9.5062 21 1 12.8911 8.6845 10.4349 22 1 14.7658 7.1696 10.1690 23 1 13.9809 8.4707 8.2792 24 16 4.9254 2.5903 2.6112 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6212 1.4026 -0.9314 30 1 3.0451 0.5742 1.7351 31 1 4.7171 5.3755 0.3540 32 1 8.7555 5.7631 3.4818 33 1 7.4986 6.4955 4.5074 34 1 7.8841 4.7512 6.2267 35 1 9.1411 4.0183 5.2014 36 1 10.4425 6.1269 5.2886 37 1 9.1857 6.8603 6.3138 38 1 12.9218 5.1777 10.5484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805508541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:12 Heat of formation + Delta-G solvation = -48.169980 kcal Electronic energy + Delta-G solvation = -20974.149676 eV Core-core repulsion = 17455.331209 eV Total energy + Delta-G solvation = -3518.818467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73510 -40.73861 -38.09871 -37.54322 -34.89845 -34.57880 -34.29410 -31.28791 -28.34116 -27.85117 -27.35535 -25.59186 -23.57319 -22.68638 -21.41739 -20.62157 -20.19153 -19.52358 -18.52943 -17.91952 -17.87854 -17.06881 -16.89394 -16.65478 -16.33257 -16.08243 -15.91448 -15.38228 -15.22189 -14.80206 -14.37067 -14.20027 -14.09574 -13.81579 -13.52043 -13.14965 -12.94661 -12.63749 -12.62923 -12.39774 -12.36928 -12.06347 -11.88652 -11.58376 -11.48544 -11.46754 -11.14462 -10.89852 -10.50793 -10.43710 -10.35927 -8.93546 -8.67521 -8.37743 -6.14208 -0.77708 -0.15508 0.53114 1.16590 1.24391 1.28955 1.40145 1.45543 1.55268 1.91222 1.98765 2.18170 2.27771 2.96887 3.29582 3.39481 3.81574 3.85480 3.88474 3.99958 4.09360 4.15406 4.21663 4.33784 4.53983 4.58383 4.66836 4.69001 4.80993 4.98950 5.01888 5.10883 5.39123 5.40573 5.51832 5.65223 5.73759 5.93977 6.18227 6.63622 6.70503 7.04827 8.71658 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035393 B = 0.001678 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.933563 B =16682.432187 C =17403.986578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.187 4.187 3 C 0.156 3.844 4 N -0.659 5.659 5 C 0.327 3.673 6 N -0.572 5.572 7 C 0.215 3.785 8 C -0.382 4.382 9 C 0.553 3.447 10 O -0.540 6.540 11 O -0.354 6.354 12 C 0.081 3.919 13 C -0.084 4.084 14 C -0.092 4.092 15 S -0.183 6.183 16 C -0.542 4.542 17 H 0.074 0.926 18 C 0.017 3.983 19 N -0.906 5.906 20 Si 0.994 3.006 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.264 1.264 24 S 0.208 5.792 25 H 0.102 0.898 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.431 0.569 31 H 0.200 0.800 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.481 -11.774 -20.961 34.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.206 4.206 3 C 0.032 3.968 4 N -0.296 5.296 5 C -0.041 4.041 6 N -0.298 5.298 7 C 0.051 3.949 8 C -0.506 4.506 9 C 0.401 3.599 10 O -0.433 6.433 11 O -0.271 6.271 12 C 0.005 3.995 13 C -0.123 4.123 14 C -0.241 4.241 15 S 0.045 5.955 16 C -0.690 4.690 17 H 0.092 0.908 18 C -0.188 4.188 19 N -0.543 5.543 20 Si 0.816 3.184 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.188 1.188 24 S 0.460 5.540 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.147 0.853 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.272 0.728 31 H 0.217 0.783 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.702 -13.308 -20.132 34.534 hybrid contribution 1.230 2.611 -0.412 2.916 sum -23.472 -10.696 -20.544 32.976 Atomic orbital electron populations 1.24213 0.95729 1.03360 0.95910 1.22937 0.96340 0.97468 1.03838 1.20627 0.91021 0.96904 0.88294 1.44224 1.38479 1.15044 1.31885 1.24313 0.93933 0.91574 0.94257 1.66374 1.28421 1.02062 1.32946 1.22412 0.85357 0.97040 0.90071 1.23244 1.14632 1.03142 1.09609 1.18308 0.79134 0.84453 0.78036 1.90881 1.66340 1.23390 1.62712 1.86134 1.50777 1.48400 1.41773 1.22639 0.89733 0.91695 0.95414 1.21107 0.97231 0.98583 0.95376 1.23069 1.00133 1.01326 0.99542 1.84602 1.49121 1.29527 1.32221 1.23066 1.25313 1.04159 1.16430 0.90824 1.26044 0.98569 0.99227 0.94936 1.70147 1.39096 1.27777 1.17235 0.85020 0.77250 0.77522 0.78642 1.19274 1.19833 1.18816 1.84215 1.32767 1.11667 1.25389 0.88011 0.86395 0.85272 0.90984 0.90537 0.72830 0.78340 0.91042 0.91042 0.90228 0.90239 0.91340 0.91314 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 14.32 67.78 0.97 0.47 16 2 C -0.19 -0.72 9.63 25.65 0.25 -0.48 16 3 C 0.16 1.17 6.36 85.63 0.54 1.72 16 4 N -0.66 -5.82 5.67 -355.10 -2.01 -7.83 16 5 C 0.33 4.97 8.05 179.43 1.44 6.42 16 6 N -0.57 -10.78 10.06 -200.59 -2.02 -12.80 16 7 C 0.21 4.39 11.08 84.51 0.94 5.33 16 8 C -0.38 -8.89 6.32 22.80 0.14 -8.74 16 9 C 0.55 15.98 7.73 68.68 0.53 16.51 16 10 O -0.54 -17.98 16.55 19.23 0.32 -17.67 16 11 O -0.35 -10.40 9.91 -58.66 -0.58 -10.99 16 12 C 0.08 2.42 5.38 71.98 0.39 2.81 16 13 C -0.08 -2.79 5.59 30.59 0.17 -2.62 16 14 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 15 S -0.18 -9.75 21.44 -56.49 -1.21 -10.96 16 16 C -0.54 -31.43 9.50 67.95 0.65 -30.79 16 17 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 18 C 0.02 0.99 5.49 84.86 0.47 1.46 16 19 N -0.91 -54.64 13.22 21.65 0.29 -54.35 16 20 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 24 S 0.21 3.56 22.99 -56.49 -1.30 2.26 16 25 H 0.10 0.33 7.84 -2.91 -0.02 0.31 16 26 H 0.12 0.12 8.06 -2.91 -0.02 0.09 16 27 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 28 H 0.07 0.65 7.79 -2.38 -0.02 0.63 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.43 1.72 8.59 -92.71 -0.80 0.92 16 31 H 0.20 3.54 8.04 -2.91 -0.02 3.51 16 32 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 33 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -72.74 367.27 2.69 -70.05 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.28 Total: 7.39 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 6.89 Total: -11.23 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -3.75 Total: -74.98 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.26 Total: -28.65 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -6.19 SS G_CDS: -2.51 Total: -8.70 kcal Total: -72.74 2.69 -70.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805508541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.884 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds