Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38437 * 119.83570 * 2 1 4 4 C 1.37876 * 120.18650 * 180.02562 * 3 2 1 5 5 C 1.39680 * 119.86313 * 359.97438 * 4 3 2 6 6 C 1.47649 * 120.15961 * 180.02562 * 5 4 3 7 7 O 1.21489 * 119.99724 * 179.97438 * 6 5 4 8 8 O 1.34718 * 120.00454 * 359.97438 * 6 5 4 9 9 C 1.45194 * 117.00006 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.46785 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46819 * 180.02562 * 10 9 8 12 12 S 1.81001 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.76200 * 99.99934 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.38795 * 119.99546 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00516 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99645 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47320 * 89.99936 * 17 15 13 19 19 H 1.48505 * 109.47138 * 209.99690 * 17 15 13 20 20 H 1.48503 * 109.47327 * 329.99739 * 17 15 13 21 21 C 1.39747 * 119.67909 * 359.97438 * 5 4 3 22 22 Cl 1.73595 * 120.09663 * 180.02562 * 21 5 4 23 23 C 1.38147 * 119.80857 * 359.77394 * 21 5 4 24 24 C 1.50698 * 119.93424 * 180.22848 * 23 21 5 25 25 H 1.09002 * 109.47152 * 90.00209 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00310 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00291 * 1 2 3 28 28 H 1.08001 * 119.90456 * 359.97252 * 3 2 1 29 29 H 1.08007 * 120.06796 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47430 * 299.99677 * 9 8 6 31 31 H 1.08994 * 109.47549 * 60.00523 * 9 8 6 32 32 H 1.09001 * 109.46714 * 299.99921 * 10 9 8 33 33 H 1.08994 * 109.46810 * 59.99875 * 10 9 8 34 34 H 1.09004 * 109.46790 * 299.99587 * 11 10 9 35 35 H 1.08992 * 109.47271 * 59.99896 * 11 10 9 36 36 H 0.97003 * 119.99962 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46968 * 270.25037 * 24 23 21 38 38 H 1.09001 * 109.47015 * 30.25425 * 24 23 21 39 39 H 1.09004 * 109.47395 * 150.25151 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2009 0.0000 4 6 3.5745 1.2093 -0.0005 5 6 4.2774 0.0023 -0.0005 6 6 5.7539 0.0037 -0.0005 7 8 6.3623 -1.0479 -0.0001 8 8 6.4265 1.1709 -0.0011 9 6 7.8765 1.0962 -0.0016 10 6 8.4600 2.5107 -0.0015 11 6 9.9880 2.4319 -0.0027 12 16 10.6783 4.1051 -0.0018 13 6 12.3991 3.7262 -0.0027 14 1 12.7253 2.6967 -0.0030 15 6 13.3353 4.7509 -0.0018 16 7 12.9377 6.0057 -0.0008 17 14 15.1596 4.3491 -0.0034 18 1 15.6422 4.2446 -1.4038 19 1 15.9042 5.4259 0.6977 20 1 15.3827 3.0576 0.6948 21 6 3.5764 -1.2067 0.0006 22 17 4.4391 -2.7131 0.0012 23 6 2.1950 -1.1995 0.0063 24 6 1.4362 -2.5015 0.0127 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6515 2.1337 -0.0004 29 1 4.1099 2.1473 -0.0009 30 1 8.2133 0.5646 0.8884 31 1 8.2126 0.5643 -0.8916 32 1 8.1232 3.0426 -0.8913 33 1 8.1239 3.0422 0.8887 34 1 10.3251 1.8998 0.8869 35 1 10.3237 1.9005 -0.8931 36 1 13.5921 6.7218 -0.0005 37 1 1.2529 -2.8202 -1.0134 38 1 2.0224 -3.2611 0.5299 39 1 0.4845 -2.3649 0.5263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805528602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -84.128502 kcal Electronic energy + Delta-G solvation = -21756.114768 eV Core-core repulsion = 18201.400565 eV Total energy + Delta-G solvation = -3554.714203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78299 -39.58049 -36.89243 -36.49107 -34.16893 -33.36078 -32.44247 -32.34842 -28.53690 -27.57937 -26.30960 -25.42346 -23.23117 -22.37801 -21.33975 -20.67842 -17.93692 -17.39949 -17.16107 -16.60047 -16.28070 -16.00516 -15.08758 -14.86719 -14.81184 -14.53281 -14.28190 -13.90148 -13.44657 -13.34527 -13.25568 -12.96656 -12.73357 -12.63802 -12.44276 -12.13110 -12.00955 -11.65155 -11.60578 -11.35854 -11.33216 -11.13168 -10.97555 -10.88151 -10.67128 -10.27065 -10.07411 -9.62661 -9.18990 -9.07845 -9.07630 -8.35885 -6.56465 -6.24806 -3.95786 0.22321 0.73174 1.80596 2.30590 2.48972 3.21500 3.22306 3.23786 3.28963 3.53852 4.14805 4.20023 4.26731 4.42986 4.52674 4.59688 4.89799 5.00287 5.04905 5.10864 5.13991 5.17922 5.19277 5.23490 5.26427 5.38272 5.43365 5.49923 5.64108 5.70750 5.74637 5.78433 5.92877 5.97834 6.16045 6.26492 6.42268 6.45396 6.67402 7.59244 7.68993 8.34983 9.21653 10.83316 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.001963 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.444084 B =14263.468420 C =15179.552672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.044 4.044 3 C -0.128 4.128 4 C -0.051 4.051 5 C -0.119 4.119 6 C 0.500 3.500 7 O -0.487 6.487 8 O -0.351 6.351 9 C 0.075 3.925 10 C -0.097 4.097 11 C -0.114 4.114 12 S -0.124 6.124 13 C -0.518 4.518 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.920 3.080 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.019 3.981 22 Cl -0.028 7.028 23 C -0.094 4.094 24 C -0.121 4.121 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.150 0.850 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.057 -13.942 -0.020 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.044 4.044 3 C -0.146 4.146 4 C -0.069 4.069 5 C -0.121 4.121 6 C 0.344 3.656 7 O -0.375 6.375 8 O -0.268 6.268 9 C 0.000 4.000 10 C -0.136 4.136 11 C -0.263 4.263 12 S 0.104 5.896 13 C -0.666 4.666 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.009 4.009 22 Cl 0.002 6.998 23 C -0.095 4.095 24 C -0.177 4.177 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.194 -13.181 -0.012 31.123 hybrid contribution 2.139 -1.511 -0.027 2.620 sum -26.055 -14.692 -0.039 29.912 Atomic orbital electron populations 1.20977 0.90094 1.03657 1.03137 1.20001 0.96700 0.91844 0.95903 1.21148 0.93851 0.98118 1.01444 1.21519 0.94223 0.97378 0.93761 1.18941 0.90309 0.93231 1.09651 1.20878 0.88295 0.82420 0.74026 1.90926 1.69946 1.32186 1.44393 1.86491 1.23288 1.33243 1.83789 1.23291 0.74228 0.99745 1.02738 1.21287 0.94256 0.93747 1.04293 1.23178 0.95469 1.04268 1.03374 1.84638 1.05524 1.02542 1.96883 1.22696 0.89863 0.95406 1.58640 0.90831 1.25020 0.99729 0.94504 0.94538 1.70018 1.34689 0.98626 1.47158 0.86147 0.82652 0.78234 0.78391 1.20245 1.20732 1.19658 1.20895 0.91813 0.87490 1.00685 1.98416 1.76155 1.29353 1.95905 1.19536 0.90872 0.96563 1.02543 1.20945 1.00163 0.93391 1.03236 0.90236 0.90773 0.90530 0.84379 0.83216 0.91033 0.91029 0.90342 0.90333 0.91714 0.91712 0.92256 0.90386 0.90668 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 9.60 36.01 0.35 -0.12 16 2 C -0.04 -0.30 5.89 -104.53 -0.62 -0.92 16 3 C -0.13 -0.91 9.68 -39.64 -0.38 -1.29 16 4 C -0.05 -0.47 9.62 -39.18 -0.38 -0.84 16 5 C -0.12 -1.40 5.88 -104.95 -0.62 -2.02 16 6 C 0.50 7.12 7.89 34.57 0.27 7.40 16 7 O -0.49 -7.92 13.76 -19.26 -0.27 -8.18 16 8 O -0.35 -4.99 9.47 -40.54 -0.38 -5.38 16 9 C 0.07 1.10 5.48 37.16 0.20 1.31 16 10 C -0.10 -1.59 5.60 -26.72 -0.15 -1.74 16 11 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 12 S -0.12 -3.22 21.44 -107.50 -2.30 -5.53 16 13 C -0.52 -14.83 9.50 30.94 0.29 -14.54 16 14 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 15 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 16 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 17 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.02 0.20 6.35 -39.05 -0.25 -0.04 16 22 Cl -0.03 -0.33 24.36 -51.86 -1.26 -1.60 16 23 C -0.09 -0.79 5.88 -104.64 -0.62 -1.40 16 24 C -0.12 -0.72 9.19 36.00 0.33 -0.39 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 27 H 0.08 0.23 5.91 -51.93 -0.31 -0.08 16 28 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.15 1.25 7.61 -52.48 -0.40 0.85 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 35 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.49 6.91 -51.93 -0.36 0.13 16 39 H 0.08 0.31 5.92 -51.93 -0.31 0.00 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -32.77 358.57 -9.69 -42.46 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -5.14 Total: -3.81 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.44 Total: -14.76 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.73 Total: -25.16 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.65 Total: -13.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.53 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.26 Total: -1.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.77 -9.69 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805528602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.668 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds