Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38437 * 119.83570 * 2 1 4 4 C 1.37876 * 120.18650 * 180.02562 * 3 2 1 5 5 C 1.39680 * 119.86313 * 359.97438 * 4 3 2 6 6 C 1.47649 * 120.15961 * 180.02562 * 5 4 3 7 7 O 1.21489 * 119.99724 * 179.97438 * 6 5 4 8 8 O 1.34718 * 120.00454 * 359.97438 * 6 5 4 9 9 C 1.45194 * 117.00006 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.46785 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46819 * 180.02562 * 10 9 8 12 12 S 1.81001 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.76200 * 99.99934 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00015 * 359.97438 * 13 12 11 15 15 C 1.38795 * 119.99546 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00516 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99645 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47320 * 89.99936 * 17 15 13 19 19 H 1.48505 * 109.47138 * 209.99690 * 17 15 13 20 20 H 1.48503 * 109.47327 * 329.99739 * 17 15 13 21 21 C 1.39747 * 119.67909 * 359.97438 * 5 4 3 22 22 Cl 1.73595 * 120.09663 * 180.02562 * 21 5 4 23 23 C 1.38147 * 119.80857 * 359.77394 * 21 5 4 24 24 C 1.50698 * 119.93424 * 180.22848 * 23 21 5 25 25 H 1.09002 * 109.47152 * 90.00209 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00310 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00291 * 1 2 3 28 28 H 1.08001 * 119.90456 * 359.97252 * 3 2 1 29 29 H 1.08007 * 120.06796 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47430 * 299.99677 * 9 8 6 31 31 H 1.08994 * 109.47549 * 60.00523 * 9 8 6 32 32 H 1.09001 * 109.46714 * 299.99921 * 10 9 8 33 33 H 1.08994 * 109.46810 * 59.99875 * 10 9 8 34 34 H 1.09004 * 109.46790 * 299.99587 * 11 10 9 35 35 H 1.08992 * 109.47271 * 59.99896 * 11 10 9 36 36 H 0.97003 * 119.99962 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46968 * 270.25037 * 24 23 21 38 38 H 1.09001 * 109.47015 * 30.25425 * 24 23 21 39 39 H 1.09004 * 109.47395 * 150.25151 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2009 0.0000 4 6 3.5745 1.2093 -0.0005 5 6 4.2774 0.0023 -0.0005 6 6 5.7539 0.0037 -0.0005 7 8 6.3623 -1.0479 -0.0001 8 8 6.4265 1.1709 -0.0011 9 6 7.8765 1.0962 -0.0016 10 6 8.4600 2.5107 -0.0015 11 6 9.9880 2.4319 -0.0027 12 16 10.6783 4.1051 -0.0018 13 6 12.3991 3.7262 -0.0027 14 1 12.7253 2.6967 -0.0030 15 6 13.3353 4.7509 -0.0018 16 7 12.9377 6.0057 -0.0008 17 14 15.1596 4.3491 -0.0034 18 1 15.6422 4.2446 -1.4038 19 1 15.9042 5.4259 0.6977 20 1 15.3827 3.0576 0.6948 21 6 3.5764 -1.2067 0.0006 22 17 4.4391 -2.7131 0.0012 23 6 2.1950 -1.1995 0.0063 24 6 1.4362 -2.5015 0.0127 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6515 2.1337 -0.0004 29 1 4.1099 2.1473 -0.0009 30 1 8.2133 0.5646 0.8884 31 1 8.2126 0.5643 -0.8916 32 1 8.1232 3.0426 -0.8913 33 1 8.1239 3.0422 0.8887 34 1 10.3251 1.8998 0.8869 35 1 10.3237 1.9005 -0.8931 36 1 13.5921 6.7218 -0.0005 37 1 1.2529 -2.8202 -1.0134 38 1 2.0224 -3.2611 0.5299 39 1 0.4845 -2.3649 0.5263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805528602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -100.509898 kcal Electronic energy + Delta-G solvation = -21756.825118 eV Core-core repulsion = 18201.400565 eV Total energy + Delta-G solvation = -3555.424553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73934 -40.38764 -37.89225 -37.45846 -35.07983 -34.63305 -34.46843 -32.93761 -29.19049 -28.41221 -27.84243 -27.08816 -24.07748 -23.03450 -22.73311 -21.56204 -19.59620 -18.76635 -18.17475 -17.77663 -16.98842 -16.90704 -16.75516 -16.18652 -16.09791 -15.42590 -15.39898 -14.91764 -14.59105 -14.21578 -14.08796 -13.86261 -13.78809 -13.60772 -13.30572 -13.16132 -13.08669 -12.95519 -12.74215 -12.64238 -12.40871 -12.39565 -12.31544 -12.14007 -12.08749 -11.55979 -11.53780 -11.15880 -11.02737 -10.37744 -9.83928 -9.75554 -8.68943 -8.39063 -6.15532 -0.54451 0.08350 1.01249 1.24860 1.38233 1.38893 1.39495 1.50356 1.80971 2.25950 2.50405 2.95376 3.26038 3.44170 3.59582 3.78525 3.82907 3.95673 4.00086 4.03341 4.12792 4.26036 4.30737 4.40740 4.58258 4.66628 4.67394 4.70303 4.79898 4.90999 4.99922 5.01245 5.06312 5.12120 5.15913 5.30973 5.35090 5.39127 5.44308 5.72717 6.16874 6.59502 7.03436 8.70222 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.001963 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.444084 B =14263.468420 C =15179.552672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.035 4.035 3 C -0.122 4.122 4 C -0.054 4.054 5 C -0.148 4.148 6 C 0.498 3.502 7 O -0.515 6.515 8 O -0.350 6.350 9 C 0.083 3.917 10 C -0.084 4.084 11 C -0.092 4.092 12 S -0.182 6.182 13 C -0.541 4.541 14 H 0.073 0.927 15 C 0.016 3.984 16 N -0.906 5.906 17 Si 0.994 3.006 18 H -0.268 1.268 19 H -0.273 1.273 20 H -0.264 1.264 21 C 0.001 3.999 22 Cl -0.048 7.048 23 C -0.099 4.099 24 C -0.121 4.121 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.996 -14.302 -0.033 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.035 4.035 3 C -0.140 4.140 4 C -0.072 4.072 5 C -0.150 4.150 6 C 0.344 3.656 7 O -0.405 6.405 8 O -0.267 6.267 9 C 0.007 3.993 10 C -0.123 4.123 11 C -0.241 4.241 12 S 0.047 5.953 13 C -0.689 4.689 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.542 5.542 17 Si 0.816 3.184 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.189 1.189 21 C -0.027 4.027 22 Cl -0.018 7.018 23 C -0.099 4.099 24 C -0.177 4.177 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.187 0.813 29 H 0.172 0.828 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -30.154 -13.537 -0.026 33.054 hybrid contribution 2.545 -1.405 -0.025 2.907 sum -27.609 -14.942 -0.051 31.393 Atomic orbital electron populations 1.21098 0.87359 1.05052 1.04326 1.20455 0.98549 0.91030 0.93486 1.21533 0.92977 0.99656 0.99843 1.21674 0.95348 0.96575 0.93652 1.18964 0.88739 0.94657 1.12631 1.21416 0.89381 0.81778 0.73051 1.90904 1.70668 1.32879 1.46021 1.86477 1.22676 1.33630 1.83919 1.23048 0.74943 0.98331 1.02948 1.21097 0.91648 0.94922 1.04589 1.23066 0.97517 0.99900 1.03621 1.84594 1.05559 1.08121 1.97057 1.23052 0.91143 0.95670 1.59037 0.90856 1.26058 1.04914 0.94230 0.93730 1.70142 1.36513 0.99705 1.47825 0.85015 0.76198 0.78356 0.78831 1.19286 1.19810 1.18860 1.21124 0.92836 0.86502 1.02203 1.98400 1.76825 1.30490 1.96124 1.19890 0.89918 0.98348 1.01793 1.21024 1.00754 0.91940 1.04007 0.88897 0.89217 0.89391 0.81269 0.82757 0.90892 0.90875 0.90069 0.90070 0.91423 0.91389 0.91877 0.89522 0.91590 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 9.60 71.24 0.68 0.25 16 2 C -0.03 -0.38 5.89 -19.81 -0.12 -0.49 16 3 C -0.12 -1.40 9.68 22.23 0.22 -1.19 16 4 C -0.05 -0.94 9.62 22.53 0.22 -0.72 16 5 C -0.15 -3.47 5.88 -20.08 -0.12 -3.59 16 6 C 0.50 14.44 7.89 70.31 0.55 15.00 16 7 O -0.51 -17.26 13.76 19.87 0.27 -16.99 16 8 O -0.35 -9.95 9.47 -56.28 -0.53 -10.48 16 9 C 0.08 2.42 5.48 71.99 0.39 2.81 16 10 C -0.08 -2.72 5.60 30.60 0.17 -2.55 16 11 C -0.09 -3.69 5.67 71.98 0.41 -3.28 16 12 S -0.18 -9.63 21.44 -56.49 -1.21 -10.84 16 13 C -0.54 -31.33 9.50 67.95 0.65 -30.68 16 14 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 15 C 0.02 0.90 5.49 84.86 0.47 1.37 16 16 N -0.91 -54.51 13.22 21.65 0.29 -54.22 16 17 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.00 0.01 6.35 22.61 0.14 0.16 16 22 Cl -0.05 -1.17 24.36 -2.72 -0.07 -1.24 16 23 C -0.10 -1.49 5.88 -19.88 -0.12 -1.60 16 24 C -0.12 -1.20 9.19 71.24 0.65 -0.55 16 25 H 0.09 0.17 8.14 -2.39 -0.02 0.16 16 26 H 0.09 0.10 8.08 -2.39 -0.02 0.08 16 27 H 0.09 0.15 5.91 -2.38 -0.01 0.14 16 28 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.15 2.42 7.61 -2.91 -0.02 2.40 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.80 6.91 -2.39 -0.02 0.78 16 39 H 0.10 0.48 5.92 -2.38 -0.01 0.47 16 Total: -1.00 -72.27 358.57 6.04 -66.23 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.06 Total: 6.46 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 4.20 Total: -25.07 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.29 Total: -54.22 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.26 Total: -27.46 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.21 Total: -10.84 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.24 kcal Total: -72.27 6.04 -66.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805528602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.282 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds