Wall clock time and date at job start Tue Mar 31 2020 14:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 120.00713 * 2 1 4 4 C 1.38219 * 120.01316 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02733 * 0.02562 * 4 3 2 6 6 C 1.38197 * 120.01557 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00724 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47486 * 264.99816 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.52994 * 109.46919 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47236 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.47340 * 180.02562 * 13 12 11 15 15 C 1.76196 * 100.00033 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00020 * 0.02562 * 15 14 13 17 17 C 1.38800 * 120.00036 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47015 * 90.00172 * 19 17 15 21 21 H 1.48505 * 109.47316 * 210.00399 * 19 17 15 22 22 H 1.48504 * 109.46917 * 330.00084 * 19 17 15 23 23 C 1.38333 * 120.00977 * 180.23537 * 2 1 3 24 24 Cl 1.73599 * 120.00951 * 0.04072 * 23 2 1 25 25 H 1.08996 * 109.47143 * 89.99905 * 1 2 3 26 26 H 1.09002 * 109.46853 * 209.99714 * 1 2 3 27 27 H 1.08998 * 109.46973 * 329.99687 * 1 2 3 28 28 H 1.08000 * 119.99200 * 359.97438 * 3 2 1 29 29 H 1.08008 * 119.98590 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.99310 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47069 * 145.00018 * 7 6 5 32 32 H 1.09000 * 109.47237 * 25.00524 * 7 6 5 33 33 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 34 34 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 35 35 H 1.08997 * 109.47687 * 300.00275 * 12 11 10 36 36 H 1.09002 * 109.47633 * 60.00402 * 12 11 10 37 37 H 1.09006 * 109.46823 * 299.99852 * 13 12 11 38 38 H 1.08996 * 109.47249 * 60.00061 * 13 12 11 39 39 H 0.97003 * 119.99927 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0003 0.0005 6 6 3.5826 -1.1971 0.0005 7 6 4.3370 -2.5016 0.0011 8 6 4.4818 -2.9989 -1.4141 9 8 4.0202 -2.3592 -2.3294 10 8 5.1289 -4.1492 -1.6584 11 6 5.2355 -4.5638 -3.0459 12 6 5.9989 -5.8872 -3.1255 13 6 6.1117 -6.3238 -4.5875 14 16 7.0142 -7.8899 -4.6816 15 6 6.9960 -8.1493 -6.4243 16 1 6.5155 -7.4311 -7.0722 17 6 7.6000 -9.2761 -6.9646 18 7 8.1861 -10.1513 -6.1751 19 14 7.5813 -9.5508 -8.8122 20 1 8.7820 -8.9214 -9.4184 21 1 7.5898 -11.0085 -9.0961 22 1 6.3571 -8.9410 -9.3909 23 6 2.1989 -1.1979 -0.0049 24 17 1.3314 -2.7016 -0.0122 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6583 2.1324 -0.0004 29 1 4.1203 2.1328 0.0001 30 1 5.3525 0.0011 0.0005 31 1 3.7899 -3.2375 0.5905 32 1 5.3249 -2.3498 0.4359 33 1 4.2373 -4.6947 -3.4637 34 1 5.7696 -3.8012 -3.6129 35 1 6.9971 -5.7567 -2.7076 36 1 5.4646 -6.6496 -2.5586 37 1 5.1136 -6.4543 -5.0058 38 1 6.6463 -5.5614 -5.1541 39 1 8.6086 -10.9386 -6.5527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805538301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:19 Heat of formation + Delta-G solvation = -110.250684 kcal Electronic energy + Delta-G solvation = -21700.907239 eV Core-core repulsion = 18145.060293 eV Total energy + Delta-G solvation = -3555.846946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70555 -40.39928 -37.86456 -37.47987 -34.98945 -34.71350 -34.57746 -32.81246 -29.58085 -28.08854 -27.84934 -27.21544 -23.60926 -22.87233 -22.58872 -21.35893 -19.59523 -18.76093 -17.95687 -17.86978 -17.40384 -16.95808 -16.90809 -16.18316 -15.96702 -15.86355 -15.15978 -14.87137 -14.69302 -14.31626 -14.16295 -14.03261 -13.78884 -13.49032 -13.30297 -13.14554 -13.09770 -12.95190 -12.64149 -12.47616 -12.46917 -12.40363 -12.37909 -12.20877 -11.74861 -11.68255 -11.53089 -11.43951 -11.15907 -10.37788 -9.76042 -9.60445 -8.69331 -8.39099 -6.15741 0.09574 0.23136 1.12024 1.13814 1.27609 1.38982 1.44026 1.53282 1.86108 2.25952 2.64979 2.95311 3.27667 3.40041 3.67737 3.74656 3.82539 3.94899 3.96977 4.13643 4.20113 4.29737 4.30731 4.35719 4.41732 4.51389 4.65316 4.67247 4.72216 4.73701 4.88896 4.99876 5.11127 5.19955 5.27806 5.38001 5.38784 5.43150 5.45759 5.86126 6.16714 6.66701 7.03285 8.70195 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.001886 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.222991 B =14842.381328 C =14984.438522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 C -0.109 4.109 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.082 4.082 7 C -0.075 4.075 8 C 0.463 3.537 9 O -0.530 6.530 10 O -0.357 6.357 11 C 0.081 3.919 12 C -0.086 4.086 13 C -0.092 4.092 14 S -0.184 6.184 15 C -0.541 4.541 16 H 0.073 0.927 17 C 0.015 3.985 18 N -0.906 5.906 19 Si 0.995 3.005 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.264 1.264 23 C -0.043 4.043 24 Cl -0.076 7.076 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.126 0.874 32 H 0.151 0.849 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 24.927 17.280 32.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.125 4.125 6 C -0.083 4.083 7 C -0.112 4.112 8 C 0.307 3.693 9 O -0.419 6.419 10 O -0.273 6.273 11 C 0.006 3.994 12 C -0.124 4.124 13 C -0.241 4.241 14 S 0.045 5.955 15 C -0.689 4.689 16 H 0.092 0.908 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.816 3.184 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.188 1.188 23 C -0.070 4.070 24 Cl -0.047 7.047 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.142 24.128 17.814 32.356 hybrid contribution -0.534 -0.066 -2.279 2.341 sum -12.676 24.062 15.535 31.321 Atomic orbital electron populations 1.20905 0.89188 1.04233 1.03189 1.20086 0.97841 0.91424 0.99801 1.21406 0.94701 0.97546 0.99041 1.21590 0.94449 0.99005 0.97868 1.21324 1.01337 0.90970 0.98890 1.19296 0.91386 0.95269 1.02307 1.20463 1.05464 0.95394 0.89897 1.24048 0.73890 0.78166 0.93166 1.90678 1.46244 1.57143 1.47846 1.86464 1.69675 1.39530 1.31668 1.23000 1.01131 0.96424 0.78852 1.21103 1.01725 0.95096 0.94475 1.23068 1.02349 0.99511 0.99139 1.84617 1.73167 1.25696 1.12011 1.23048 1.42698 1.11497 0.91609 0.90841 1.26071 0.93831 0.94447 1.04636 1.70146 1.34952 1.11653 1.37458 0.85007 0.79124 0.77812 0.76409 1.19213 1.19865 1.18844 1.20939 0.92063 0.87214 1.06749 1.98357 1.76806 1.32727 1.96829 0.90739 0.91329 0.88943 0.82533 0.82453 0.83120 0.85574 0.83137 0.91330 0.90774 0.89994 0.90332 0.91559 0.91294 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.61 71.24 0.68 -0.79 16 2 C -0.09 -1.48 5.88 -19.84 -0.12 -1.59 16 3 C -0.11 -1.35 9.70 22.27 0.22 -1.13 16 4 C -0.11 -1.31 10.05 22.27 0.22 -1.08 16 5 C -0.11 -1.53 9.68 22.26 0.22 -1.32 16 6 C -0.08 -1.48 4.38 -19.84 -0.09 -1.57 16 7 C -0.08 -1.27 5.45 29.10 0.16 -1.12 16 8 C 0.46 11.60 7.95 71.23 0.57 12.16 16 9 O -0.53 -16.49 15.78 21.94 0.35 -16.14 16 10 O -0.36 -9.53 10.22 -51.41 -0.53 -10.06 16 11 C 0.08 2.33 5.47 71.98 0.39 2.72 16 12 C -0.09 -2.76 5.60 30.59 0.17 -2.59 16 13 C -0.09 -3.67 5.67 71.98 0.41 -3.26 16 14 S -0.18 -9.73 21.44 -56.49 -1.21 -10.94 16 15 C -0.54 -31.26 9.50 67.95 0.65 -30.62 16 16 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 17 C 0.02 0.87 5.49 84.86 0.47 1.34 16 18 N -0.91 -54.56 13.22 21.65 0.29 -54.27 16 19 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 C -0.04 -0.85 6.31 22.32 0.14 -0.71 16 24 Cl -0.08 -1.58 25.75 -2.72 -0.07 -1.65 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.92 6.91 -2.39 -0.02 0.90 16 27 H 0.09 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 29 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.13 1.94 7.14 -2.38 -0.02 1.92 16 32 H 0.15 1.55 8.05 -2.39 -0.02 1.53 16 33 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.07 2.08 8.13 -2.38 -0.02 2.06 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.69 8.14 -2.40 -0.02 2.67 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -72.44 365.48 5.99 -66.45 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.05 Total: 10.12 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 4.09 Total: -29.56 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.29 Total: -54.27 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.18 Total: -26.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -9.73 SS G_CDS: -1.21 Total: -10.94 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.65 kcal Total: -72.44 5.99 -66.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805538301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.803 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds