Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37895 * 119.93661 * 2 1 4 4 C 1.39644 * 119.86452 * 179.74472 * 3 2 1 5 5 C 1.47667 * 120.13916 * 180.27443 * 4 3 2 6 6 O 1.21477 * 120.00082 * 186.27907 * 5 4 3 7 7 O 1.34721 * 119.99767 * 6.27341 * 5 4 3 8 8 C 1.45194 * 117.00027 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.47286 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.47166 * 179.97438 * 9 8 7 11 11 S 1.81003 * 109.47245 * 179.97438 * 10 9 8 12 12 C 1.76199 * 100.00212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00118 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00193 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99549 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00257 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47071 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47209 * 119.99642 * 16 14 12 19 19 H 1.48499 * 109.47314 * 239.99908 * 16 14 12 20 20 C 1.39692 * 119.72830 * 0.52944 * 4 3 2 21 21 C 1.50701 * 120.06684 * 179.72316 * 20 4 3 22 22 C 1.37856 * 119.85995 * 359.44359 * 20 4 3 23 23 C 1.38508 * 119.92727 * 179.97438 * 2 1 3 24 24 Cl 1.73600 * 119.86518 * 0.02562 * 23 2 1 25 25 H 1.09008 * 109.46896 * 270.02525 * 1 2 3 26 26 H 1.08994 * 109.46754 * 30.02327 * 1 2 3 27 27 H 1.08991 * 109.47189 * 150.02706 * 1 2 3 28 28 H 1.08005 * 120.06738 * 359.97438 * 3 2 1 29 29 H 1.09009 * 109.47020 * 300.00296 * 8 7 5 30 30 H 1.08999 * 109.47523 * 60.00494 * 8 7 5 31 31 H 1.08995 * 109.46908 * 299.99927 * 9 8 7 32 32 H 1.09000 * 109.47138 * 59.99990 * 9 8 7 33 33 H 1.09009 * 109.47116 * 299.99927 * 10 9 8 34 34 H 1.09004 * 109.47746 * 59.99769 * 10 9 8 35 35 H 0.97006 * 119.99666 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.46989 * 276.26810 * 21 20 4 37 37 H 1.08994 * 109.47433 * 36.27658 * 21 20 4 38 38 H 1.08999 * 109.46761 * 156.27676 * 21 20 4 39 39 H 1.07994 * 119.93460 * 180.25329 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1950 0.0000 4 6 3.5916 1.1932 0.0054 5 6 4.3346 2.4693 0.0115 6 8 5.5444 2.4683 -0.0988 7 8 3.6708 3.6346 0.1395 8 6 4.4656 4.8497 0.1368 9 6 3.5448 6.0619 0.2916 10 6 4.3823 7.3422 0.2894 11 16 3.2930 8.7761 0.4717 12 6 4.4857 10.0727 0.4389 13 1 5.5344 9.8390 0.3297 14 6 4.0774 11.3943 0.5534 15 7 2.7992 11.6791 0.6860 16 14 5.3418 12.7689 0.5179 17 1 6.6996 12.1885 0.3603 18 1 5.0552 13.6757 -0.6226 19 1 5.2758 13.5351 1.7882 20 6 4.2828 -0.0207 -0.0004 21 6 5.7898 -0.0314 -0.0010 22 6 3.5835 -1.2087 0.0001 23 6 2.1980 -1.2004 0.0005 24 17 1.3246 -2.7007 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3632 0.8897 -0.5142 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6552 2.1304 -0.0004 29 1 5.1730 4.8230 0.9657 30 1 5.0109 4.9252 -0.8040 31 1 2.8372 6.0887 -0.5371 32 1 2.9997 5.9863 1.2325 33 1 5.0897 7.3150 1.1183 34 1 4.9278 7.4180 -0.6513 35 1 2.5139 12.6027 0.7664 36 1 6.1536 0.0829 -1.0221 37 1 6.1593 0.7915 0.6107 38 1 6.1465 -0.9767 0.4080 39 1 4.1167 -2.1479 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805550251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = -91.739570 kcal Electronic energy + Delta-G solvation = -21737.962846 eV Core-core repulsion = 18182.918602 eV Total energy + Delta-G solvation = -3555.044244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97839 -39.49345 -37.14907 -36.69212 -34.16726 -33.58124 -32.46521 -31.63404 -29.70628 -26.84340 -25.66259 -25.36426 -24.24423 -22.33070 -21.35248 -20.58630 -18.03313 -17.42652 -16.88657 -16.73358 -16.55040 -16.15653 -15.02001 -14.87049 -14.83330 -14.45492 -14.36035 -13.61382 -13.54448 -13.36980 -13.13743 -12.88850 -12.78983 -12.67600 -12.59697 -12.22046 -12.07534 -11.91306 -11.61718 -11.39500 -11.19672 -11.17483 -11.02704 -10.90138 -10.69505 -10.35849 -10.28912 -9.64949 -9.36486 -9.10417 -9.00633 -8.37784 -6.58747 -6.26962 -3.98003 0.14631 0.76290 1.58606 2.18458 2.44074 3.18569 3.19166 3.20643 3.28303 3.51603 4.15714 4.17933 4.22530 4.39512 4.55938 4.76288 4.93095 5.07001 5.08513 5.10207 5.13778 5.24220 5.25913 5.34097 5.38550 5.44154 5.45788 5.58330 5.62698 5.74030 5.76786 5.81140 5.86881 6.02317 6.14315 6.21745 6.41542 6.42352 6.63775 7.57499 7.59500 8.33110 9.19682 10.81237 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.001876 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.509778 B =14921.899154 C =15880.191504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C -0.045 4.045 4 C -0.120 4.120 5 C 0.507 3.493 6 O -0.499 6.499 7 O -0.350 6.350 8 C 0.074 3.926 9 C -0.098 4.098 10 C -0.114 4.114 11 S -0.124 6.124 12 C -0.518 4.518 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.869 5.869 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.012 4.012 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.002 4.002 24 Cl -0.060 7.060 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.267 0.733 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -28.819 -1.479 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.098 4.098 3 C -0.063 4.063 4 C -0.121 4.121 5 C 0.352 3.648 6 O -0.389 6.389 7 O -0.267 6.267 8 C -0.001 4.001 9 C -0.136 4.136 10 C -0.263 4.263 11 S 0.104 5.896 12 C -0.666 4.666 13 H 0.092 0.908 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.013 4.013 21 C -0.181 4.181 22 C -0.142 4.142 23 C -0.029 4.029 24 Cl -0.031 7.031 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.765 -28.691 -1.383 28.857 hybrid contribution 2.139 0.765 -0.163 2.277 sum -0.626 -27.926 -1.545 27.975 Atomic orbital electron populations 1.20891 0.89455 1.03896 1.03353 1.19751 0.97362 0.90890 1.01752 1.21391 0.92531 0.98382 0.93995 1.19102 0.93533 0.90527 1.08971 1.20976 0.85960 0.84521 0.73373 1.90797 1.14877 1.87705 1.45493 1.86515 1.42171 1.15052 1.82938 1.23318 0.93891 0.80158 1.02716 1.21290 0.97950 0.90171 1.04222 1.23178 1.01975 0.97770 1.03380 1.84655 1.13077 0.96065 1.95788 1.22737 0.94084 0.91917 1.57859 0.90773 1.25025 0.96026 0.98238 0.94529 1.70028 1.14189 1.19620 1.46620 0.86090 0.80639 0.80744 0.77919 1.19574 1.20534 1.20540 1.19960 0.97242 0.90446 0.93644 1.21162 0.89102 1.03668 1.04150 1.20872 0.91639 0.98619 1.03070 1.21122 0.92375 0.87131 1.02269 1.98378 1.76405 1.31775 1.96498 0.90309 0.90489 0.90702 0.83110 0.90986 0.90972 0.90307 0.90305 0.91708 0.91712 0.92290 0.90045 0.88385 0.91723 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.61 36.01 0.35 -0.41 16 2 C -0.10 -0.80 5.88 -104.65 -0.61 -1.42 16 3 C -0.04 -0.41 9.26 -39.18 -0.36 -0.78 16 4 C -0.12 -1.29 5.87 -104.98 -0.62 -1.91 16 5 C 0.51 6.53 7.83 34.58 0.27 6.80 16 6 O -0.50 -7.19 13.12 -19.25 -0.25 -7.44 16 7 O -0.35 -4.66 9.49 -40.55 -0.38 -5.05 16 8 C 0.07 1.03 5.48 37.16 0.20 1.23 16 9 C -0.10 -1.54 5.60 -26.73 -0.15 -1.69 16 10 C -0.11 -2.23 5.67 37.15 0.21 -2.02 16 11 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 12 C -0.52 -14.66 9.50 30.94 0.29 -14.37 16 13 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 14 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 15 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 16 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.01 -0.12 5.91 -104.22 -0.62 -0.73 16 21 C -0.12 -1.10 8.75 36.01 0.32 -0.78 16 22 C -0.12 -1.00 9.44 -39.61 -0.37 -1.37 16 23 C 0.00 -0.02 6.32 -39.37 -0.25 -0.27 16 24 Cl -0.06 -0.44 27.27 -51.86 -1.41 -1.85 16 25 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.07 0.44 6.89 -51.93 -0.36 0.09 16 28 H 0.15 1.27 7.63 -52.48 -0.40 0.87 16 29 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 34 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.04 5.82 -51.93 -0.30 0.74 16 38 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -31.15 361.78 -9.88 -41.03 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.25 Total: -2.24 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.44 Total: -15.82 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.73 Total: -24.94 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.64 Total: -12.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.41 Total: -1.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.15 -9.88 -41.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805550251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.708 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds