Wall clock time and date at job start Tue Mar 31 2020 14:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37895 * 119.93661 * 2 1 4 4 C 1.39644 * 119.86452 * 179.74472 * 3 2 1 5 5 C 1.47667 * 120.13916 * 180.27443 * 4 3 2 6 6 O 1.21477 * 120.00082 * 186.27907 * 5 4 3 7 7 O 1.34721 * 119.99767 * 6.27341 * 5 4 3 8 8 C 1.45194 * 117.00027 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.47286 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.47166 * 179.97438 * 9 8 7 11 11 S 1.81003 * 109.47245 * 179.97438 * 10 9 8 12 12 C 1.76199 * 100.00212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00118 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00193 * 180.02562 * 12 11 10 15 15 N 1.31630 * 119.99549 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00257 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47071 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47209 * 119.99642 * 16 14 12 19 19 H 1.48499 * 109.47314 * 239.99908 * 16 14 12 20 20 C 1.39692 * 119.72830 * 0.52944 * 4 3 2 21 21 C 1.50701 * 120.06684 * 179.72316 * 20 4 3 22 22 C 1.37856 * 119.85995 * 359.44359 * 20 4 3 23 23 C 1.38508 * 119.92727 * 179.97438 * 2 1 3 24 24 Cl 1.73600 * 119.86518 * 0.02562 * 23 2 1 25 25 H 1.09008 * 109.46896 * 270.02525 * 1 2 3 26 26 H 1.08994 * 109.46754 * 30.02327 * 1 2 3 27 27 H 1.08991 * 109.47189 * 150.02706 * 1 2 3 28 28 H 1.08005 * 120.06738 * 359.97438 * 3 2 1 29 29 H 1.09009 * 109.47020 * 300.00296 * 8 7 5 30 30 H 1.08999 * 109.47523 * 60.00494 * 8 7 5 31 31 H 1.08995 * 109.46908 * 299.99927 * 9 8 7 32 32 H 1.09000 * 109.47138 * 59.99990 * 9 8 7 33 33 H 1.09009 * 109.47116 * 299.99927 * 10 9 8 34 34 H 1.09004 * 109.47746 * 59.99769 * 10 9 8 35 35 H 0.97006 * 119.99666 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.46989 * 276.26810 * 21 20 4 37 37 H 1.08994 * 109.47433 * 36.27658 * 21 20 4 38 38 H 1.08999 * 109.46761 * 156.27676 * 21 20 4 39 39 H 1.07994 * 119.93460 * 180.25329 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1950 0.0000 4 6 3.5916 1.1932 0.0054 5 6 4.3346 2.4693 0.0115 6 8 5.5444 2.4683 -0.0988 7 8 3.6708 3.6346 0.1395 8 6 4.4656 4.8497 0.1368 9 6 3.5448 6.0619 0.2916 10 6 4.3823 7.3422 0.2894 11 16 3.2930 8.7761 0.4717 12 6 4.4857 10.0727 0.4389 13 1 5.5344 9.8390 0.3297 14 6 4.0774 11.3943 0.5534 15 7 2.7992 11.6791 0.6860 16 14 5.3418 12.7689 0.5179 17 1 6.6996 12.1885 0.3603 18 1 5.0552 13.6757 -0.6226 19 1 5.2758 13.5351 1.7882 20 6 4.2828 -0.0207 -0.0004 21 6 5.7898 -0.0314 -0.0010 22 6 3.5835 -1.2087 0.0001 23 6 2.1980 -1.2004 0.0005 24 17 1.3246 -2.7007 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3632 0.8897 -0.5142 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6552 2.1304 -0.0004 29 1 5.1730 4.8230 0.9657 30 1 5.0109 4.9252 -0.8040 31 1 2.8372 6.0887 -0.5371 32 1 2.9997 5.9863 1.2325 33 1 5.0897 7.3150 1.1183 34 1 4.9278 7.4180 -0.6513 35 1 2.5139 12.6027 0.7664 36 1 6.1536 0.0829 -1.0221 37 1 6.1593 0.7915 0.6107 38 1 6.1465 -0.9767 0.4080 39 1 4.1167 -2.1479 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805550251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:22 Heat of formation + Delta-G solvation = -106.064497 kcal Electronic energy + Delta-G solvation = -21738.584021 eV Core-core repulsion = 18182.918602 eV Total energy + Delta-G solvation = -3555.665419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88709 -40.29575 -38.02543 -37.49325 -35.00060 -34.75988 -34.58604 -32.39207 -30.32463 -28.25628 -27.51869 -26.18812 -25.06015 -23.20513 -22.61826 -21.42901 -19.59620 -18.87234 -17.82521 -17.79947 -17.24524 -16.90793 -16.90083 -16.20768 -16.09404 -15.47954 -15.26806 -14.96069 -14.41829 -14.29079 -13.99406 -13.92577 -13.86384 -13.63950 -13.44171 -13.24719 -13.14200 -12.96777 -12.84773 -12.59992 -12.51339 -12.40253 -12.37950 -12.28070 -11.81415 -11.58139 -11.51934 -11.20038 -11.16398 -10.36037 -10.04142 -9.67188 -8.68199 -8.38753 -6.14962 -0.61171 0.10431 0.95346 1.25280 1.29891 1.38384 1.40141 1.51811 1.82110 2.26484 2.44301 2.95931 3.26902 3.43794 3.56084 3.63915 3.84681 3.89735 3.96810 4.04367 4.15696 4.29502 4.32608 4.44091 4.56421 4.63364 4.67508 4.73611 4.76059 4.78993 4.91065 5.01378 5.04509 5.06377 5.19649 5.23450 5.27754 5.40012 5.47778 5.59879 6.17620 6.58868 7.04060 8.70770 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.001876 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.509778 B =14921.899154 C =15880.191504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.098 4.098 3 C -0.048 4.048 4 C -0.139 4.139 5 C 0.506 3.494 6 O -0.519 6.519 7 O -0.352 6.352 8 C 0.082 3.918 9 C -0.086 4.086 10 C -0.092 4.092 11 S -0.185 6.185 12 C -0.540 4.540 13 H 0.074 0.926 14 C 0.015 3.985 15 N -0.906 5.906 16 Si 0.994 3.006 17 H -0.263 1.263 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.019 4.019 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.005 4.005 24 Cl -0.049 7.049 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.272 0.728 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -30.227 -1.588 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.099 4.099 3 C -0.066 4.066 4 C -0.140 4.140 5 C 0.352 3.648 6 O -0.410 6.410 7 O -0.268 6.268 8 C 0.007 3.993 9 C -0.124 4.124 10 C -0.241 4.241 11 S 0.044 5.956 12 C -0.687 4.687 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.543 5.543 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.020 4.020 21 C -0.178 4.178 22 C -0.138 4.138 23 C -0.032 4.032 24 Cl -0.019 7.019 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.173 0.827 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.309 -30.118 -1.492 30.243 hybrid contribution 1.942 1.037 -0.131 2.206 sum -0.367 -29.081 -1.624 29.128 Atomic orbital electron populations 1.20951 0.88076 1.04535 1.04039 1.19965 0.98392 0.90550 1.01000 1.21468 0.92035 0.99112 0.94018 1.19130 0.94133 0.89813 1.10952 1.21388 0.85933 0.84781 0.72668 1.90792 1.15695 1.87883 1.46595 1.86498 1.42100 1.15089 1.83152 1.23071 0.93236 0.79898 1.03112 1.21103 0.97652 0.89249 1.04416 1.23066 1.01048 0.96297 1.03649 1.84624 1.15908 0.99034 1.96029 1.23088 0.94418 0.93106 1.58132 0.90781 1.26062 0.98217 1.00941 0.93771 1.70152 1.16270 1.20457 1.47376 0.84961 0.77948 0.77140 0.78292 1.18709 1.19684 1.19691 1.20093 0.97601 0.90494 0.93763 1.21113 0.88799 1.04127 1.03723 1.21083 0.91702 0.98931 1.02041 1.21276 0.92678 0.87615 1.01621 1.98386 1.76169 1.30997 1.96372 0.89520 0.89744 0.90213 0.82682 0.90619 0.90600 0.90141 0.90194 0.91317 0.91311 0.91911 0.90295 0.90434 0.89311 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.61 71.24 0.68 -0.61 16 2 C -0.10 -1.48 5.88 -19.88 -0.12 -1.59 16 3 C -0.05 -0.85 9.26 22.53 0.21 -0.64 16 4 C -0.14 -2.90 5.87 -20.10 -0.12 -3.02 16 5 C 0.51 12.89 7.83 70.31 0.55 13.44 16 6 O -0.52 -14.92 13.12 19.91 0.26 -14.66 16 7 O -0.35 -9.17 9.49 -56.31 -0.53 -9.70 16 8 C 0.08 2.21 5.48 71.98 0.39 2.61 16 9 C -0.09 -2.65 5.60 30.59 0.17 -2.48 16 10 C -0.09 -3.55 5.67 71.98 0.41 -3.15 16 11 S -0.18 -9.62 21.44 -56.49 -1.21 -10.83 16 12 C -0.54 -30.82 9.50 67.95 0.65 -30.18 16 13 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 14 C 0.02 0.86 5.49 84.86 0.47 1.32 16 15 N -0.91 -54.14 13.22 21.65 0.29 -53.86 16 16 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 C -0.02 -0.34 5.91 -19.60 -0.12 -0.45 16 21 C -0.12 -2.03 8.75 71.24 0.62 -1.40 16 22 C -0.12 -1.69 9.44 22.25 0.21 -1.48 16 23 C 0.00 -0.07 6.32 22.41 0.14 0.07 16 24 Cl -0.05 -0.61 27.27 -2.72 -0.07 -0.68 16 25 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.08 0.79 6.89 -2.39 -0.02 0.77 16 28 H 0.16 2.50 7.63 -2.91 -0.02 2.48 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.64 5.82 -2.39 -0.01 1.63 16 38 H 0.09 1.00 8.04 -2.39 -0.02 0.98 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -66.92 361.78 5.97 -60.96 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.06 Total: 10.67 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.15 Total: -27.56 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.29 Total: -53.86 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.27 Total: -24.36 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.21 Total: -10.83 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.07 Total: -0.68 kcal Total: -66.92 5.97 -60.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805550251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.107 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds