Wall clock time and date at job start Tue Mar 31 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32625 * 123.42075 * 2 1 4 4 S 1.75470 * 110.78241 * 180.02562 * 3 2 1 5 5 C 1.70440 * 92.52797 * 0.02562 * 4 3 2 6 6 N 1.38676 * 124.65368 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99475 * 0.02562 * 6 5 4 8 8 O 1.21603 * 120.00386 * 0.02562 * 7 6 5 9 9 C 1.47485 * 119.99489 * 179.72622 * 7 6 5 10 10 C 1.39689 * 120.20099 * 0.27576 * 9 7 6 11 11 C 1.37821 * 119.91419 * 179.97438 * 10 9 7 12 12 C 1.38574 * 120.32962 * 0.02562 * 11 10 9 13 13 C 1.38034 * 120.40668 * 359.97438 * 12 11 10 14 14 C 1.38831 * 120.07423 * 359.74821 * 13 12 11 15 15 O 1.35517 * 120.16609 * 180.27760 * 14 13 12 16 16 C 1.34811 * 116.99708 * 354.39968 * 15 14 13 17 17 H 1.07995 * 120.00116 * 5.06268 * 16 15 14 18 18 C 1.38697 * 119.99504 * 185.06340 * 16 15 14 19 19 N 1.31518 * 120.00671 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99712 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47010 * 89.99928 * 20 18 16 22 22 H 1.48494 * 109.46928 * 209.99771 * 20 18 16 23 23 H 1.48497 * 109.47194 * 330.00122 * 20 18 16 24 24 C 1.37034 * 110.70032 * 0.26221 * 5 4 3 25 25 C 1.43206 * 123.58454 * 179.69190 * 24 5 4 26 26 N 3.57675 * 86.68740 * 180.32279 * 2 1 3 27 27 H 1.08998 * 109.46729 * 89.97210 * 1 2 3 28 28 H 1.08992 * 109.47232 * 209.97476 * 1 2 3 29 29 H 1.09000 * 109.46727 * 329.97414 * 1 2 3 30 30 H 1.07994 * 124.61197 * 359.97438 * 3 2 1 31 31 H 0.97000 * 120.00262 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.04272 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.83226 * 179.97438 * 11 10 9 34 34 H 1.07995 * 119.79991 * 179.97438 * 12 11 10 35 35 H 1.08003 * 119.96402 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00789 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2375 1.1070 0.0000 4 16 3.9497 0.7230 -0.0007 5 6 3.6505 -0.9549 -0.0018 6 7 4.6351 -1.9314 -0.0022 7 6 5.9355 -1.5771 -0.0013 8 8 6.2454 -0.4012 0.0004 9 6 6.9827 -2.6157 0.0044 10 6 6.6314 -3.9677 0.0029 11 6 7.6148 -4.9333 0.0077 12 6 8.9521 -4.5701 0.0145 13 6 9.3143 -3.2382 0.0160 14 6 8.3376 -2.2516 0.0054 15 8 8.6912 -0.9433 0.0012 16 6 10.0042 -0.6639 0.1248 17 1 10.7279 -1.4653 0.1391 18 6 10.4255 0.6531 0.2338 19 7 9.5443 1.6292 0.2159 20 14 12.2449 1.0404 0.4058 21 1 12.8420 1.2214 -0.9417 22 1 12.4130 2.2880 1.1934 23 1 12.9258 -0.0804 1.1024 24 6 2.3035 -1.2067 -0.0075 25 6 1.7441 -2.5250 -0.0161 26 7 1.3004 -3.5707 -0.0201 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 1.8335 2.1085 -0.0004 31 1 4.3880 -2.8694 -0.0032 32 1 5.5906 -4.2560 -0.0019 33 1 7.3418 -5.9782 0.0070 34 1 9.7156 -5.3339 0.0186 35 1 10.3587 -2.9632 0.0208 36 1 9.8390 2.5502 0.2917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809002778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:10 Heat of formation + Delta-G solvation = 28.436171 kcal Electronic energy + Delta-G solvation = -24104.563584 eV Core-core repulsion = 20453.623058 eV Total energy + Delta-G solvation = -3650.940526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29576 -38.94582 -38.01680 -36.58702 -35.87067 -34.70712 -32.52571 -31.23516 -29.72685 -29.13414 -27.63332 -25.62383 -24.53251 -23.00610 -21.69613 -21.00890 -19.84258 -18.76711 -18.17990 -17.64352 -16.77552 -15.93834 -15.42091 -15.26771 -14.79903 -14.62392 -14.45381 -14.21920 -13.96948 -13.81949 -13.61063 -13.24035 -13.13349 -12.99854 -12.78867 -12.74946 -12.16174 -12.10262 -11.86792 -11.70447 -11.49558 -11.38226 -11.04422 -10.97724 -10.71906 -10.57448 -10.49064 -9.75190 -9.22118 -9.03672 -8.54695 -8.15772 -7.94374 -7.51111 -6.62249 -4.21343 0.84790 1.44863 1.49289 2.02112 2.13514 2.18312 2.78461 3.02783 3.03885 3.05012 3.08802 3.25922 3.59099 3.79858 4.21833 4.38696 4.83842 4.87489 4.97608 5.06698 5.18248 5.31649 5.44374 5.52490 5.53964 5.62480 5.76396 5.83703 5.91460 6.10068 6.35428 6.37962 6.40450 6.47002 6.69073 6.86605 7.00977 7.11157 7.33567 7.48393 7.61491 7.76194 8.35535 8.77680 9.44377 10.50814 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003946 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.160537 B = 7094.658601 C = 9096.496208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.041 4.041 3 C -0.305 4.305 4 S 0.341 5.659 5 C 0.086 3.914 6 N -0.640 5.640 7 C 0.547 3.453 8 O -0.460 6.460 9 C -0.235 4.235 10 C -0.035 4.035 11 C -0.226 4.226 12 C -0.044 4.044 13 C -0.232 4.232 14 C 0.192 3.808 15 O -0.120 6.120 16 C -0.403 4.403 17 H 0.097 0.903 18 C 0.047 3.953 19 N -0.827 5.827 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.265 1.265 24 C -0.154 4.154 25 C 0.287 3.713 26 N -0.444 5.444 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.167 0.833 31 H 0.412 0.588 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -2.837 -0.222 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.054 4.054 3 C -0.441 4.441 4 S 0.604 5.396 5 C -0.137 4.137 6 N -0.284 5.284 7 C 0.339 3.661 8 O -0.333 6.333 9 C -0.240 4.240 10 C -0.053 4.053 11 C -0.245 4.245 12 C -0.063 4.063 13 C -0.251 4.251 14 C 0.132 3.868 15 O -0.017 6.017 16 C -0.478 4.478 17 H 0.114 0.886 18 C -0.162 4.162 19 N -0.457 5.457 20 Si 0.766 3.234 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.190 1.190 24 C -0.175 4.175 25 C -0.028 4.028 26 N -0.121 5.121 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.184 0.816 31 H 0.250 0.750 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.341 -2.205 -0.227 8.631 hybrid contribution -0.381 -1.078 0.064 1.145 sum -8.723 -3.283 -0.164 9.321 Atomic orbital electron populations 1.20490 0.89757 1.02694 1.02428 1.19189 0.96071 0.89300 1.00801 1.25876 1.01143 1.02282 1.14790 1.84974 0.98418 0.89129 1.67096 1.22195 0.90576 0.99348 1.01620 1.43168 1.04708 1.08693 1.71864 1.18707 0.80769 0.89952 0.76667 1.90872 1.79038 1.17698 1.45692 1.18353 0.90065 0.91985 1.23567 1.20756 0.98219 0.91203 0.95162 1.20483 0.92825 0.98278 1.12896 1.20968 0.95771 0.95328 0.94219 1.21184 1.00116 0.92481 1.11330 1.19148 0.91156 0.85601 0.90940 1.84120 1.27453 1.17644 1.72473 1.21547 0.79910 0.93705 1.52682 0.88610 1.25407 1.00569 0.94341 0.95857 1.70092 1.34186 1.00055 1.41360 0.85697 0.79992 0.78798 0.78908 1.19606 1.19962 1.18969 1.15759 0.89232 0.87567 1.24978 1.24949 0.93486 0.91917 0.92465 1.81234 1.07750 1.11084 1.12079 0.90989 0.91910 0.90942 0.81574 0.74963 0.87198 0.86893 0.86795 0.84712 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.95 36.01 0.36 -0.52 16 2 C -0.04 -0.50 6.00 -104.02 -0.62 -1.12 16 3 C -0.31 -3.57 10.89 28.83 0.31 -3.26 16 4 S 0.34 5.17 19.95 -107.50 -2.14 3.03 16 5 C 0.09 1.34 6.98 -14.89 -0.10 1.23 16 6 N -0.64 -10.35 5.31 -12.58 -0.07 -10.42 16 7 C 0.55 10.95 7.72 -12.49 -0.10 10.85 16 8 O -0.46 -10.82 12.59 -16.58 -0.21 -11.03 16 9 C -0.23 -4.71 5.89 -104.81 -0.62 -5.33 16 10 C -0.03 -0.56 9.54 -39.19 -0.37 -0.94 16 11 C -0.23 -3.48 10.02 -39.61 -0.40 -3.88 16 12 C -0.04 -0.72 10.03 -39.53 -0.40 -1.12 16 13 C -0.23 -4.58 9.16 -39.44 -0.36 -4.95 16 14 C 0.19 4.39 6.66 -38.59 -0.26 4.13 16 15 O -0.12 -3.23 7.84 -21.04 -0.16 -3.40 16 16 C -0.40 -10.56 9.49 30.90 0.29 -10.27 16 17 H 0.10 2.27 5.21 -52.49 -0.27 2.00 16 18 C 0.05 1.22 5.49 -17.52 -0.10 1.13 16 19 N -0.83 -23.01 13.67 55.48 0.76 -22.26 16 20 Si 0.94 19.16 29.55 -169.99 -5.02 14.14 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.15 -2.15 5.88 -105.90 -0.62 -2.77 16 25 C 0.29 4.15 14.23 -22.47 -0.32 3.83 16 26 N -0.44 -6.92 18.54 41.84 0.78 -6.14 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 29 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.41 5.75 6.18 -40.82 -0.25 5.50 16 32 H 0.11 1.44 6.40 -52.49 -0.34 1.11 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.14 2.61 5.64 -52.48 -0.30 2.31 16 36 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -30.53 336.56 -7.11 -37.64 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.81 Total: 6.36 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.30 Total: -12.98 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 1.47 Total: -38.82 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.37 Total: -14.43 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -2.14 Total: 3.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.53 -7.11 -37.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809002778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.075 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds