Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32625 * 123.42075 * 2 1 4 4 S 1.75470 * 110.78241 * 180.02562 * 3 2 1 5 5 C 1.70440 * 92.52797 * 0.02562 * 4 3 2 6 6 N 1.38676 * 124.65368 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99475 * 0.02562 * 6 5 4 8 8 O 1.21603 * 120.00386 * 0.02562 * 7 6 5 9 9 C 1.47485 * 119.99489 * 179.72622 * 7 6 5 10 10 C 1.39689 * 120.20099 * 0.27576 * 9 7 6 11 11 C 1.37821 * 119.91419 * 179.97438 * 10 9 7 12 12 C 1.38574 * 120.32962 * 0.02562 * 11 10 9 13 13 C 1.38034 * 120.40668 * 359.97438 * 12 11 10 14 14 C 1.38831 * 120.07423 * 359.74821 * 13 12 11 15 15 O 1.35517 * 120.16609 * 180.27760 * 14 13 12 16 16 C 1.34811 * 116.99708 * 354.39968 * 15 14 13 17 17 H 1.07995 * 120.00116 * 5.06268 * 16 15 14 18 18 C 1.38697 * 119.99504 * 185.06340 * 16 15 14 19 19 N 1.31518 * 120.00671 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99712 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47010 * 89.99928 * 20 18 16 22 22 H 1.48494 * 109.46928 * 209.99771 * 20 18 16 23 23 H 1.48497 * 109.47194 * 330.00122 * 20 18 16 24 24 C 1.37034 * 110.70032 * 0.26221 * 5 4 3 25 25 C 1.43206 * 123.58454 * 179.69190 * 24 5 4 26 26 N 3.57675 * 86.68740 * 180.32279 * 2 1 3 27 27 H 1.08998 * 109.46729 * 89.97210 * 1 2 3 28 28 H 1.08992 * 109.47232 * 209.97476 * 1 2 3 29 29 H 1.09000 * 109.46727 * 329.97414 * 1 2 3 30 30 H 1.07994 * 124.61197 * 359.97438 * 3 2 1 31 31 H 0.97000 * 120.00262 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.04272 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.83226 * 179.97438 * 11 10 9 34 34 H 1.07995 * 119.79991 * 179.97438 * 12 11 10 35 35 H 1.08003 * 119.96402 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00789 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2375 1.1070 0.0000 4 16 3.9497 0.7230 -0.0007 5 6 3.6505 -0.9549 -0.0018 6 7 4.6351 -1.9314 -0.0022 7 6 5.9355 -1.5771 -0.0013 8 8 6.2454 -0.4012 0.0004 9 6 6.9827 -2.6157 0.0044 10 6 6.6314 -3.9677 0.0029 11 6 7.6148 -4.9333 0.0077 12 6 8.9521 -4.5701 0.0145 13 6 9.3143 -3.2382 0.0160 14 6 8.3376 -2.2516 0.0054 15 8 8.6912 -0.9433 0.0012 16 6 10.0042 -0.6639 0.1248 17 1 10.7279 -1.4653 0.1391 18 6 10.4255 0.6531 0.2338 19 7 9.5443 1.6292 0.2159 20 14 12.2449 1.0404 0.4058 21 1 12.8420 1.2214 -0.9417 22 1 12.4130 2.2880 1.1934 23 1 12.9258 -0.0804 1.1024 24 6 2.3035 -1.2067 -0.0075 25 6 1.7441 -2.5250 -0.0161 26 7 1.3004 -3.5707 -0.0201 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 1.8335 2.1085 -0.0004 31 1 4.3880 -2.8694 -0.0032 32 1 5.5906 -4.2560 -0.0019 33 1 7.3418 -5.9782 0.0070 34 1 9.7156 -5.3339 0.0186 35 1 10.3587 -2.9632 0.0208 36 1 9.8390 2.5502 0.2917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809002778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = 10.602167 kcal Electronic energy + Delta-G solvation = -24105.336925 eV Core-core repulsion = 20453.623058 eV Total energy + Delta-G solvation = -3651.713867 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77996 -40.41975 -39.30932 -38.14632 -37.06432 -36.07194 -34.33753 -32.61911 -30.87514 -30.65059 -28.59732 -27.42542 -25.85350 -24.35276 -23.20592 -22.37279 -20.97902 -20.15674 -19.84226 -18.99251 -18.33703 -17.23362 -16.76777 -16.68760 -16.31359 -16.04913 -15.97358 -15.60807 -15.40968 -15.10397 -14.86322 -14.58173 -14.36031 -14.27038 -14.07183 -13.84457 -13.56130 -13.35202 -13.13116 -13.00685 -12.80996 -12.67344 -12.56859 -12.42615 -12.12700 -11.98000 -11.68325 -11.35684 -10.83105 -10.68546 -9.98958 -9.34300 -9.20423 -9.02246 -8.45374 -6.15452 -0.42677 0.09360 0.28250 0.65165 1.00497 1.08354 1.36269 1.45983 1.53677 1.60888 1.72535 1.79822 2.15706 2.40491 2.82280 3.02913 3.15014 3.34511 3.69837 3.82728 3.97274 4.19282 4.23082 4.42845 4.51262 4.56354 4.66168 4.85430 4.86209 4.87054 5.00602 5.07139 5.08314 5.36672 5.38446 5.46309 5.51444 5.62917 5.90087 6.02486 6.07662 6.42176 6.88081 6.94949 7.72590 8.73632 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003946 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.160537 B = 7094.658601 C = 9096.496208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.046 4.046 3 C -0.275 4.275 4 S 0.278 5.722 5 C 0.064 3.936 6 N -0.628 5.628 7 C 0.545 3.455 8 O -0.504 6.504 9 C -0.247 4.247 10 C -0.033 4.033 11 C -0.200 4.200 12 C -0.031 4.031 13 C -0.252 4.252 14 C 0.161 3.839 15 O -0.179 6.179 16 C -0.428 4.428 17 H 0.108 0.892 18 C -0.013 4.013 19 N -0.894 5.894 20 Si 1.017 2.983 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.250 1.250 24 C -0.137 4.137 25 C 0.298 3.702 26 N -0.456 5.456 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.200 0.800 31 H 0.423 0.577 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 -5.825 -0.174 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.058 4.058 3 C -0.410 4.410 4 S 0.542 5.458 5 C -0.158 4.158 6 N -0.273 5.273 7 C 0.337 3.663 8 O -0.379 6.379 9 C -0.252 4.252 10 C -0.051 4.051 11 C -0.219 4.219 12 C -0.049 4.049 13 C -0.272 4.272 14 C 0.105 3.895 15 O -0.080 6.080 16 C -0.504 4.504 17 H 0.125 0.875 18 C -0.214 4.214 19 N -0.529 5.529 20 Si 0.836 3.164 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.174 1.174 24 C -0.159 4.159 25 C -0.017 4.017 26 N -0.134 5.134 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.217 0.783 31 H 0.263 0.737 32 H 0.165 0.835 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.147 0.853 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.082 -5.278 -0.183 11.382 hybrid contribution -0.231 -0.552 0.031 0.599 sum -10.313 -5.831 -0.152 11.848 Atomic orbital electron populations 1.20583 0.87143 1.03793 1.03607 1.19551 0.97659 0.88235 1.00306 1.26058 0.98106 1.03846 1.12986 1.85293 1.02208 0.90347 1.67968 1.22220 0.90835 0.98871 1.03918 1.42789 1.03670 1.09353 1.71486 1.18831 0.81984 0.89408 0.76104 1.90883 1.80207 1.19399 1.47450 1.18806 0.89338 0.93940 1.23082 1.21210 1.00692 0.89440 0.93796 1.21134 0.91934 1.00345 1.08455 1.21479 0.97613 0.94430 0.91425 1.21342 0.99468 0.93738 1.12604 1.19882 0.93124 0.85455 0.91033 1.84129 1.27642 1.19719 1.76536 1.22014 0.80511 0.94480 1.53386 0.87471 1.26626 1.05501 0.93914 0.95362 1.70259 1.36649 1.00333 1.45619 0.84622 0.73880 0.78767 0.79149 1.18814 1.19759 1.17355 1.15995 0.88728 0.88179 1.23005 1.24896 0.93016 0.91716 0.92072 1.81251 1.08346 1.11422 1.12359 0.89682 0.92178 0.88544 0.78275 0.73733 0.83546 0.82125 0.82542 0.85250 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 9.95 71.24 0.71 -0.68 16 2 C -0.05 -1.00 6.00 -19.40 -0.12 -1.11 16 3 C -0.27 -5.94 10.89 66.66 0.73 -5.21 16 4 S 0.28 8.78 19.95 -56.49 -1.13 7.65 16 5 C 0.06 1.98 6.98 83.33 0.58 2.56 16 6 N -0.63 -20.35 5.31 -311.97 -1.66 -22.01 16 7 C 0.54 22.74 7.72 86.68 0.67 23.41 16 8 O -0.50 -25.63 12.59 16.86 0.21 -25.42 16 9 C -0.25 -10.02 5.89 -19.99 -0.12 -10.14 16 10 C -0.03 -0.97 9.54 22.52 0.21 -0.76 16 11 C -0.20 -5.18 10.02 22.25 0.22 -4.96 16 12 C -0.03 -0.91 10.03 22.30 0.22 -0.68 16 13 C -0.25 -9.96 9.16 22.36 0.20 -9.76 16 14 C 0.16 7.68 6.66 22.91 0.15 7.83 16 15 O -0.18 -10.45 7.84 0.90 0.01 -10.44 16 16 C -0.43 -24.07 9.49 67.93 0.64 -23.43 16 17 H 0.11 5.40 5.21 -2.91 -0.02 5.38 16 18 C -0.01 -0.72 5.49 84.85 0.47 -0.26 16 19 N -0.89 -54.16 13.67 21.62 0.30 -53.86 16 20 Si 1.02 41.41 29.55 68.60 2.03 43.44 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 24 C -0.14 -3.61 5.88 -20.69 -0.12 -3.74 16 25 C 0.30 7.98 14.23 88.33 1.26 9.24 16 26 N -0.46 -13.15 18.54 19.01 0.35 -12.80 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 0.96 7.69 -2.39 -0.02 0.95 16 29 H 0.10 1.02 8.13 -2.39 -0.02 1.01 16 30 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.42 11.21 6.18 -92.71 -0.57 10.64 16 32 H 0.15 3.23 6.40 -2.91 -0.02 3.21 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 35 H 0.13 5.14 5.64 -2.91 -0.02 5.12 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -75.07 336.56 6.42 -68.65 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.60 Total: 22.48 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 5.72 Total: -17.68 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -1.01 Total: -88.67 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: 0.22 Total: -35.86 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 8.78 SS G_CDS: -1.13 Total: 7.65 kcal Total: -75.07 6.42 -68.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809002778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.249 kcal (2) G-P(sol) polarization free energy of solvation -75.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds