Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33162 * 123.12909 * 2 1 4 4 S 1.75740 * 109.74243 * 180.02562 * 3 2 1 5 5 C 1.70633 * 91.69103 * 359.83124 * 4 3 2 6 6 C 1.34449 * 110.52153 * 0.29076 * 5 4 3 7 7 C 1.48253 * 122.84786 * 179.91141 * 6 5 4 8 8 N 1.30963 * 126.31825 * 179.71015 * 7 6 5 9 9 O 1.21276 * 110.33241 * 179.71151 * 8 7 6 10 10 C 1.34243 * 109.92665 * 0.46848 * 9 8 7 11 11 C 1.47614 * 126.55981 * 179.80297 * 10 9 8 12 12 C 1.39607 * 120.18755 * 179.69181 * 11 10 9 13 13 C 1.37879 * 119.91746 * 180.02562 * 12 11 10 14 14 C 1.38537 * 120.30953 * 359.97301 * 13 12 11 15 15 C 1.38060 * 120.39497 * 0.02562 * 14 13 12 16 16 C 1.38794 * 120.07072 * 0.02562 * 15 14 13 17 17 O 1.35563 * 120.15778 * 180.02562 * 16 15 14 18 18 C 1.34815 * 117.00332 * 354.39496 * 17 16 15 19 19 H 1.08001 * 119.99214 * 5.06236 * 18 17 16 20 20 C 1.38670 * 120.00489 * 185.06875 * 18 17 16 21 21 N 1.31541 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00302 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46980 * 59.99864 * 22 20 18 24 24 H 1.48497 * 109.47331 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47209 * 300.00134 * 22 20 18 26 26 N 1.32066 * 106.87771 * 359.53993 * 10 9 8 27 27 H 1.09000 * 109.47326 * 269.98147 * 1 2 3 28 28 H 1.09001 * 109.47040 * 29.98100 * 1 2 3 29 29 H 1.09007 * 109.46768 * 149.97625 * 1 2 3 30 30 H 1.07998 * 125.13312 * 0.03833 * 3 2 1 31 31 H 1.08002 * 124.73914 * 180.17681 * 5 4 3 32 32 H 1.07995 * 120.04291 * 0.03752 * 12 11 10 33 33 H 1.07997 * 119.84424 * 179.97438 * 13 12 11 34 34 H 1.08001 * 119.80233 * 179.74744 * 14 13 12 35 35 H 1.07995 * 119.96927 * 179.97438 * 15 14 13 36 36 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2347 1.1152 0.0000 4 16 3.9444 0.7083 -0.0007 5 6 3.5985 -0.9626 0.0040 6 6 2.2699 -1.1689 -0.0004 7 6 1.6664 -2.5231 0.0002 8 7 0.3868 -2.8020 0.0014 9 8 0.2173 -4.0028 -0.0040 10 6 1.4030 -4.6323 0.0008 11 6 1.6236 -6.0919 0.0008 12 6 2.9217 -6.6056 -0.0002 13 6 3.1214 -7.9698 -0.0008 14 6 2.0392 -8.8348 0.0003 15 6 0.7500 -8.3407 0.0014 16 6 0.5305 -6.9703 0.0008 17 8 -0.7346 -6.4832 0.0024 18 6 -1.7355 -7.3790 -0.1129 19 1 -1.5157 -8.4364 -0.1187 20 6 -3.0471 -6.9427 -0.2241 21 7 -3.3148 -5.6549 -0.2166 22 14 -4.4339 -8.1839 -0.3846 23 1 -4.4493 -9.0661 0.8099 24 1 -5.7303 -7.4671 -0.4879 25 1 -4.2244 -9.0054 -1.6039 26 7 2.3342 -3.6959 -0.0002 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8347 2.1183 0.0006 31 1 4.3428 -1.7452 0.0080 32 1 3.7685 -5.9353 -0.0004 33 1 4.1261 -8.3660 -0.0020 34 1 2.2050 -9.9020 -0.0043 35 1 -0.0885 -9.0213 0.0018 36 1 -4.2322 -5.3497 -0.2948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809480966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = 103.455745 kcal Electronic energy + Delta-G solvation = -24368.053610 eV Core-core repulsion = 20720.366177 eV Total energy + Delta-G solvation = -3647.687433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.62095 -39.27006 -38.60718 -36.68825 -34.86211 -32.70820 -32.34600 -30.99165 -29.81020 -29.05008 -27.44428 -25.61660 -24.59292 -23.68238 -22.22481 -21.48233 -21.02955 -18.70253 -18.20945 -17.65584 -17.23909 -17.17283 -16.40039 -15.46674 -14.98503 -14.75447 -14.54101 -14.04612 -13.94519 -13.88988 -13.44243 -13.15045 -13.04326 -12.79514 -12.34515 -12.22359 -11.98123 -11.85572 -11.71224 -11.50604 -11.17714 -11.15003 -11.01481 -10.95273 -10.86041 -10.57815 -10.32356 -10.09137 -9.64588 -9.02144 -8.74344 -8.36162 -8.06070 -7.42937 -6.63018 -4.22105 0.81499 1.21531 1.56607 1.88882 1.98154 2.16845 2.68497 3.03754 3.05697 3.08682 3.39600 3.55581 3.80043 4.03628 4.37932 4.60868 4.86493 4.92251 4.98283 5.14012 5.41690 5.48495 5.53920 5.57707 5.63820 5.83333 5.85894 6.00507 6.07031 6.12445 6.21568 6.37977 6.44712 6.52648 6.58742 6.66194 6.85545 6.98343 7.09614 7.16277 7.51732 7.76217 8.77726 8.87045 9.39479 10.50831 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003644 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.928991 B = 7682.652242 C = 9671.896089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.069 4.069 3 C -0.241 4.241 4 S 0.167 5.833 5 C -0.205 4.205 6 C -0.025 4.025 7 C 0.213 3.787 8 N -0.382 5.382 9 O 0.117 5.883 10 C 0.263 3.737 11 C -0.133 4.133 12 C -0.011 4.011 13 C -0.223 4.223 14 C -0.045 4.045 15 C -0.231 4.231 16 C 0.177 3.823 17 O -0.145 6.145 18 C -0.398 4.398 19 H 0.098 0.902 20 C 0.046 3.954 21 N -0.835 5.835 22 Si 0.944 3.056 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.267 1.267 26 N -0.504 5.504 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.391 6.150 0.197 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.376 4.376 4 S 0.433 5.567 5 C -0.344 4.344 6 C -0.041 4.041 7 C -0.059 4.059 8 N -0.089 5.089 9 O 0.055 5.945 10 C 0.050 3.950 11 C -0.138 4.138 12 C -0.031 4.031 13 C -0.242 4.242 14 C -0.064 4.064 15 C -0.250 4.250 16 C 0.117 3.883 17 O -0.044 6.044 18 C -0.474 4.474 19 H 0.116 0.884 20 C -0.162 4.162 21 N -0.466 5.466 22 Si 0.767 3.233 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 N -0.240 5.240 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.157 8.226 0.199 13.863 hybrid contribution -1.987 -1.772 -0.049 2.662 sum 9.171 6.454 0.150 11.215 Atomic orbital electron populations 1.20687 0.88689 1.03749 1.03034 1.18950 0.98043 0.90634 1.00503 1.25327 0.96003 1.02302 1.13999 1.82910 1.06138 0.97151 1.70529 1.25051 0.99509 1.02079 1.07807 1.16306 0.91747 0.88188 1.07813 1.23144 0.86493 0.93380 1.02915 1.74911 1.18101 0.94447 1.21470 1.85663 1.32162 1.11973 1.64664 1.26023 0.79572 0.95786 0.93597 1.16286 0.92891 0.82560 1.22070 1.20708 0.93794 0.95283 0.93294 1.20537 0.98381 0.92599 1.12716 1.20993 0.92207 0.98964 0.94261 1.21095 0.97827 0.94486 1.11634 1.19274 0.85563 0.91562 0.91876 1.83968 1.09940 1.36219 1.74242 1.21432 0.84103 0.88976 1.52842 0.88425 1.25400 0.97734 0.97231 0.95868 1.70061 1.21241 1.13304 1.41954 0.85739 0.78950 0.79166 0.79413 1.19227 1.20063 1.19228 1.72124 1.30024 0.96984 1.24842 0.90941 0.91686 0.89208 0.81483 0.80840 0.85519 0.86571 0.86696 0.84614 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.55 36.00 0.34 -1.17 16 2 C -0.07 -1.03 5.85 -105.89 -0.62 -1.65 16 3 C -0.24 -2.85 10.98 28.96 0.32 -2.53 16 4 S 0.17 1.78 23.09 -107.50 -2.48 -0.70 16 5 C -0.20 -2.88 10.67 29.39 0.31 -2.57 16 6 C -0.03 -0.43 5.80 -106.61 -0.62 -1.05 16 7 C 0.21 4.37 7.79 -156.26 -1.22 3.15 16 8 N -0.38 -8.64 9.47 31.24 0.30 -8.34 16 9 O 0.12 2.87 9.98 -2.01 -0.02 2.85 16 10 C 0.26 5.91 7.95 -13.85 -0.11 5.80 16 11 C -0.13 -2.84 5.89 -104.81 -0.62 -3.45 16 12 C -0.01 -0.19 9.70 -39.20 -0.38 -0.57 16 13 C -0.22 -3.51 10.03 -39.60 -0.40 -3.90 16 14 C -0.05 -0.73 10.03 -39.54 -0.40 -1.13 16 15 C -0.23 -4.53 9.16 -39.44 -0.36 -4.89 16 16 C 0.18 4.03 6.66 -38.63 -0.26 3.77 16 17 O -0.15 -3.87 8.20 -17.88 -0.15 -4.01 16 18 C -0.40 -10.30 9.49 30.89 0.29 -10.01 16 19 H 0.10 2.27 5.21 -52.49 -0.27 2.00 16 20 C 0.05 1.18 5.49 -17.52 -0.10 1.09 16 21 N -0.83 -23.21 13.67 55.48 0.76 -22.45 16 22 Si 0.94 19.17 29.55 -169.99 -5.02 14.15 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 N -0.50 -10.50 11.17 -10.22 -0.11 -10.61 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.09 1.59 5.89 -51.92 -0.31 1.28 16 30 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.17 2.31 8.06 -52.49 -0.42 1.88 16 32 H 0.13 2.03 7.87 -52.49 -0.41 1.62 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.14 2.58 5.64 -52.49 -0.30 2.28 16 36 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -29.63 332.90 -8.48 -38.11 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.96 Total: 5.11 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -3.80 Total: -19.12 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.94 Total: -41.41 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -0.17 Total: -1.16 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.63 -8.48 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809480966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.567 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds