Wall clock time and date at job start Tue Mar 31 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33162 * 123.12909 * 2 1 4 4 S 1.75740 * 109.74243 * 180.02562 * 3 2 1 5 5 C 1.70633 * 91.69103 * 359.83124 * 4 3 2 6 6 C 1.34449 * 110.52153 * 0.29076 * 5 4 3 7 7 C 1.48253 * 122.84786 * 179.91141 * 6 5 4 8 8 N 1.30963 * 126.31825 * 179.71015 * 7 6 5 9 9 O 1.21276 * 110.33241 * 179.71151 * 8 7 6 10 10 C 1.34243 * 109.92665 * 0.46848 * 9 8 7 11 11 C 1.47614 * 126.55981 * 179.80297 * 10 9 8 12 12 C 1.39607 * 120.18755 * 179.69181 * 11 10 9 13 13 C 1.37879 * 119.91746 * 180.02562 * 12 11 10 14 14 C 1.38537 * 120.30953 * 359.97301 * 13 12 11 15 15 C 1.38060 * 120.39497 * 0.02562 * 14 13 12 16 16 C 1.38794 * 120.07072 * 0.02562 * 15 14 13 17 17 O 1.35563 * 120.15778 * 180.02562 * 16 15 14 18 18 C 1.34815 * 117.00332 * 354.39496 * 17 16 15 19 19 H 1.08001 * 119.99214 * 5.06236 * 18 17 16 20 20 C 1.38670 * 120.00489 * 185.06875 * 18 17 16 21 21 N 1.31541 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00302 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46980 * 59.99864 * 22 20 18 24 24 H 1.48497 * 109.47331 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47209 * 300.00134 * 22 20 18 26 26 N 1.32066 * 106.87771 * 359.53993 * 10 9 8 27 27 H 1.09000 * 109.47326 * 269.98147 * 1 2 3 28 28 H 1.09001 * 109.47040 * 29.98100 * 1 2 3 29 29 H 1.09007 * 109.46768 * 149.97625 * 1 2 3 30 30 H 1.07998 * 125.13312 * 0.03833 * 3 2 1 31 31 H 1.08002 * 124.73914 * 180.17681 * 5 4 3 32 32 H 1.07995 * 120.04291 * 0.03752 * 12 11 10 33 33 H 1.07997 * 119.84424 * 179.97438 * 13 12 11 34 34 H 1.08001 * 119.80233 * 179.74744 * 14 13 12 35 35 H 1.07995 * 119.96927 * 179.97438 * 15 14 13 36 36 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2347 1.1152 0.0000 4 16 3.9444 0.7083 -0.0007 5 6 3.5985 -0.9626 0.0040 6 6 2.2699 -1.1689 -0.0004 7 6 1.6664 -2.5231 0.0002 8 7 0.3868 -2.8020 0.0014 9 8 0.2173 -4.0028 -0.0040 10 6 1.4030 -4.6323 0.0008 11 6 1.6236 -6.0919 0.0008 12 6 2.9217 -6.6056 -0.0002 13 6 3.1214 -7.9698 -0.0008 14 6 2.0392 -8.8348 0.0003 15 6 0.7500 -8.3407 0.0014 16 6 0.5305 -6.9703 0.0008 17 8 -0.7346 -6.4832 0.0024 18 6 -1.7355 -7.3790 -0.1129 19 1 -1.5157 -8.4364 -0.1187 20 6 -3.0471 -6.9427 -0.2241 21 7 -3.3148 -5.6549 -0.2166 22 14 -4.4339 -8.1839 -0.3846 23 1 -4.4493 -9.0661 0.8099 24 1 -5.7303 -7.4671 -0.4879 25 1 -4.2244 -9.0054 -1.6039 26 7 2.3342 -3.6959 -0.0002 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8347 2.1183 0.0006 31 1 4.3428 -1.7452 0.0080 32 1 3.7685 -5.9353 -0.0004 33 1 4.1261 -8.3660 -0.0020 34 1 2.2050 -9.9020 -0.0043 35 1 -0.0885 -9.0213 0.0018 36 1 -4.2322 -5.3497 -0.2948 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809480966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:50 Heat of formation + Delta-G solvation = 85.783865 kcal Electronic energy + Delta-G solvation = -24368.819920 eV Core-core repulsion = 20720.366177 eV Total energy + Delta-G solvation = -3648.453744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.27967 -40.90942 -39.74571 -38.31717 -36.45938 -34.44285 -34.02327 -32.15171 -31.33003 -30.62164 -28.59768 -27.45112 -25.99397 -25.24369 -23.62619 -23.07675 -22.45043 -20.08769 -19.93636 -18.94528 -18.89969 -18.45188 -17.97523 -16.96057 -16.42737 -16.29103 -16.12297 -15.70288 -15.36041 -15.18023 -14.84325 -14.57751 -14.34397 -14.09403 -13.61752 -13.54912 -13.45311 -13.32074 -13.28762 -12.84190 -12.70686 -12.62318 -12.53363 -12.37267 -12.15713 -12.06052 -11.81683 -11.63150 -11.34137 -10.83230 -9.85543 -9.68495 -9.26462 -9.05759 -8.48474 -6.18092 -0.47421 -0.24100 0.59024 0.62904 0.65473 0.86488 1.17378 1.36543 1.47922 1.53073 1.91866 1.97374 2.14563 2.54527 2.79500 3.11131 3.12731 3.29178 3.82421 3.90401 4.09574 4.18986 4.27869 4.39077 4.48447 4.53396 4.57852 4.67639 4.70191 4.80671 4.90237 4.92178 4.96420 5.05827 5.13077 5.32972 5.45389 5.51731 5.55181 5.65359 5.92859 6.07894 6.92007 7.18230 7.64731 8.70652 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003644 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.928991 B = 7682.652242 C = 9671.896089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.101 4.101 3 C -0.230 4.230 4 S 0.273 5.727 5 C -0.213 4.213 6 C -0.071 4.071 7 C 0.223 3.777 8 N -0.408 5.408 9 O 0.068 5.932 10 C 0.251 3.749 11 C -0.151 4.151 12 C -0.015 4.015 13 C -0.192 4.192 14 C -0.028 4.028 15 C -0.244 4.244 16 C 0.149 3.851 17 O -0.200 6.200 18 C -0.421 4.421 19 H 0.115 0.885 20 C -0.015 4.015 21 N -0.901 5.901 22 Si 1.019 2.981 23 H -0.253 1.253 24 H -0.277 1.277 25 H -0.254 1.254 26 N -0.500 5.500 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.202 0.798 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.137 0.863 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.353 5.698 0.142 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.365 4.365 4 S 0.540 5.460 5 C -0.353 4.353 6 C -0.087 4.087 7 C -0.049 4.049 8 N -0.122 5.122 9 O 0.015 5.985 10 C 0.037 3.963 11 C -0.156 4.156 12 C -0.034 4.034 13 C -0.210 4.210 14 C -0.047 4.047 15 C -0.263 4.263 16 C 0.093 3.907 17 O -0.102 6.102 18 C -0.496 4.496 19 H 0.132 0.868 20 C -0.215 4.215 21 N -0.537 5.537 22 Si 0.837 3.163 23 H -0.177 1.177 24 H -0.202 1.202 25 H -0.178 1.178 26 N -0.236 5.236 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.219 0.781 31 H 0.196 0.804 32 H 0.163 0.837 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.154 0.846 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.171 7.703 0.148 17.015 hybrid contribution -2.622 -1.539 -0.021 3.041 sum 12.549 6.163 0.127 13.981 Atomic orbital electron populations 1.20590 0.89577 1.03172 1.02452 1.18936 0.97898 0.91125 1.03279 1.25785 0.97115 1.02778 1.10830 1.82593 1.03718 0.92771 1.66911 1.25361 0.98482 1.05318 1.06172 1.16570 0.93248 0.86921 1.11940 1.23926 0.85984 0.94920 1.00058 1.74957 1.19535 0.93743 1.23985 1.85641 1.33575 1.13032 1.66207 1.26563 0.79437 0.96839 0.93421 1.16822 0.94263 0.81985 1.22518 1.21075 0.92522 0.96977 0.92854 1.21177 1.00629 0.91262 1.07972 1.21545 0.90427 1.01625 0.91079 1.21313 0.99905 0.92977 1.12137 1.19887 0.85059 0.93503 0.92226 1.83984 1.11298 1.37279 1.77654 1.21975 0.84642 0.89831 1.53137 0.86778 1.26664 1.00374 0.99185 0.95316 1.70247 1.21432 1.15912 1.46061 0.84648 0.74948 0.76507 0.80147 1.17744 1.20191 1.17815 1.72112 1.29469 0.96877 1.25130 0.91659 0.88918 0.93005 0.78141 0.80429 0.83657 0.81541 0.81838 0.84555 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.08 9.55 71.23 0.68 -2.40 16 2 C -0.10 -3.00 5.85 -20.68 -0.12 -3.12 16 3 C -0.23 -4.73 10.98 66.68 0.73 -4.00 16 4 S 0.27 4.76 23.09 -56.49 -1.30 3.46 16 5 C -0.21 -5.67 10.67 66.95 0.71 -4.95 16 6 C -0.07 -2.43 5.80 -21.16 -0.12 -2.55 16 7 C 0.22 9.75 7.79 137.27 1.07 10.82 16 8 N -0.41 -20.33 9.47 -57.46 -0.54 -20.87 16 9 O 0.07 3.73 9.98 86.99 0.87 4.60 16 10 C 0.25 12.06 7.95 87.21 0.69 12.75 16 11 C -0.15 -6.65 5.89 -19.99 -0.12 -6.77 16 12 C -0.01 -0.49 9.70 22.52 0.22 -0.27 16 13 C -0.19 -5.11 10.03 22.26 0.22 -4.89 16 14 C -0.03 -0.80 10.03 22.30 0.22 -0.57 16 15 C -0.24 -9.43 9.16 22.36 0.20 -9.23 16 16 C 0.15 7.13 6.66 22.89 0.15 7.28 16 17 O -0.20 -11.58 8.20 -2.80 -0.02 -11.60 16 18 C -0.42 -23.27 9.49 67.92 0.64 -22.62 16 19 H 0.12 5.56 5.21 -2.91 -0.02 5.54 16 20 C -0.02 -0.83 5.49 84.84 0.47 -0.36 16 21 N -0.90 -54.88 13.67 21.62 0.30 -54.59 16 22 Si 1.02 41.24 29.55 68.60 2.03 43.27 16 23 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 24 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 26 N -0.50 -21.77 11.17 -302.09 -3.37 -25.14 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 2.23 8.13 -2.39 -0.02 2.21 16 29 H 0.05 2.02 5.89 -2.38 -0.01 2.00 16 30 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.18 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.15 4.30 7.87 -2.91 -0.02 4.28 16 33 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.14 5.17 5.64 -2.91 -0.02 5.15 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.57 332.90 4.75 -70.82 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.15 Total: 20.94 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 5.66 Total: -30.89 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -3.62 Total: -100.60 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.85 Total: -7.00 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.30 Total: 3.46 kcal Total: -75.57 4.75 -70.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809480966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.603 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds