Wall clock time and date at job start Tue Mar 31 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37828 * 122.63921 * 2 1 4 4 C 1.33720 * 115.07125 * 179.80473 * 3 2 1 5 5 S 1.75867 * 109.74110 * 0.43909 * 4 3 2 6 6 C 1.34844 * 122.63581 * 180.28805 * 2 1 3 7 7 C 1.47758 * 125.26950 * 0.02562 * 6 2 1 8 8 N 1.31124 * 126.34680 * 0.02562 * 7 6 2 9 9 O 1.21274 * 110.30406 * 180.02562 * 8 7 6 10 10 C 1.34253 * 109.96692 * 359.97438 * 9 8 7 11 11 C 1.47612 * 126.53914 * 179.97438 * 10 9 8 12 12 C 1.39605 * 120.18896 * 180.02562 * 11 10 9 13 13 C 1.37879 * 119.91776 * 179.97438 * 12 11 10 14 14 C 1.38542 * 120.31427 * 0.02562 * 13 12 11 15 15 C 1.38065 * 120.38713 * 359.95711 * 14 13 12 16 16 C 1.38794 * 120.07240 * 359.78716 * 15 14 13 17 17 O 1.35567 * 120.15852 * 180.23336 * 16 15 14 18 18 C 1.34812 * 116.99873 * 354.40142 * 17 16 15 19 19 H 1.08001 * 120.00044 * 5.06371 * 18 17 16 20 20 C 1.38678 * 120.00164 * 185.06351 * 18 17 16 21 21 N 1.31538 * 119.99962 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00252 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46919 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47466 * 119.99819 * 22 20 18 25 25 H 1.48499 * 109.47193 * 240.00119 * 22 20 18 26 26 N 1.32034 * 106.92065 * 359.73592 * 10 9 8 27 27 H 1.08993 * 109.47047 * 269.71218 * 1 2 3 28 28 H 1.08997 * 109.46799 * 149.70783 * 1 2 3 29 29 H 1.09000 * 109.46361 * 29.70737 * 1 2 3 30 30 H 1.08000 * 122.46361 * 0.02562 * 3 2 1 31 31 H 1.07993 * 125.12892 * 180.19408 * 4 3 2 32 32 H 1.07997 * 120.04310 * 0.02562 * 12 11 10 33 33 H 1.08001 * 119.84111 * 180.02562 * 13 12 11 34 34 H 1.07992 * 119.80588 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.96301 * 180.02562 * 15 14 13 36 36 H 0.96998 * 120.00213 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2504 1.1606 0.0000 4 6 3.5760 0.9845 0.0041 5 16 3.9468 -0.7346 -0.0043 6 6 2.2343 -1.1355 -0.0057 7 6 1.6785 -2.5046 -0.0131 8 7 0.4076 -2.8274 -0.0158 9 8 0.2797 -4.0334 -0.0215 10 6 1.4862 -4.6223 -0.0238 11 6 1.7557 -6.0736 -0.0299 12 6 3.0703 -6.5434 -0.0311 13 6 3.3156 -7.9002 -0.0363 14 6 2.2631 -8.8011 -0.0410 15 6 0.9581 -8.3505 -0.0396 16 6 0.6927 -6.9882 -0.0290 17 8 -0.5880 -6.5439 -0.0228 18 6 -1.5584 -7.4718 -0.1446 19 1 -1.3033 -8.5212 -0.1589 20 6 -2.8840 -7.0789 -0.2515 21 7 -3.1948 -5.8009 -0.2335 22 14 -4.2285 -8.3646 -0.4210 23 1 -3.6211 -9.7197 -0.4140 24 1 -5.1768 -8.2420 0.7152 25 1 -4.9563 -8.1544 -1.6982 26 7 2.3856 -3.6557 -0.0246 27 1 -0.3633 -0.0052 1.0276 28 1 -0.3633 -0.8873 -0.5184 29 1 -0.3632 0.8926 -0.5093 30 1 1.7957 2.1403 0.0004 31 1 4.3083 1.7782 0.0078 32 1 3.8941 -5.8451 -0.0270 33 1 4.3331 -8.2624 -0.0368 34 1 2.4647 -9.8621 -0.0456 35 1 0.1429 -9.0588 -0.0429 36 1 -4.1220 -5.5261 -0.3079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810316148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:27 Heat of formation + Delta-G solvation = 104.537823 kcal Electronic energy + Delta-G solvation = -24301.725379 eV Core-core repulsion = 20654.084868 eV Total energy + Delta-G solvation = -3647.640511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.66151 -39.28118 -38.37112 -36.70271 -35.07994 -32.91705 -32.47632 -30.75415 -29.64418 -28.96388 -27.94947 -25.61888 -24.01247 -23.59004 -22.51952 -21.55596 -21.10041 -18.62816 -18.22339 -17.78452 -17.29185 -17.08251 -16.06728 -15.50798 -15.20224 -14.76736 -14.53518 -14.02199 -13.95557 -13.88873 -13.55231 -13.26866 -12.99936 -12.82147 -12.20716 -12.12621 -12.02078 -11.87359 -11.73025 -11.41587 -11.26722 -11.16107 -11.07113 -10.88553 -10.80030 -10.54806 -10.36938 -10.17178 -9.64990 -9.04166 -8.58357 -8.34271 -8.12044 -7.44607 -6.64420 -4.23222 0.62323 1.19108 1.49541 1.96105 2.15882 2.25375 2.65390 3.03095 3.04062 3.10168 3.21563 3.50623 3.78898 3.88806 4.36731 4.62993 4.85248 4.87212 4.97067 5.19746 5.38402 5.48139 5.53074 5.56502 5.64923 5.82998 5.85630 5.95666 6.05607 6.06958 6.16160 6.39405 6.41692 6.50577 6.53829 6.62989 6.84362 6.97296 7.08490 7.15664 7.50741 7.75107 8.76642 8.80392 9.38279 10.49596 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.003795 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.737804 B = 7375.907198 C = 9382.905766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.219 4.219 5 S 0.169 5.831 6 C -0.116 4.116 7 C 0.222 3.778 8 N -0.375 5.375 9 O 0.119 5.881 10 C 0.268 3.732 11 C -0.135 4.135 12 C -0.010 4.010 13 C -0.223 4.223 14 C -0.045 4.045 15 C -0.231 4.231 16 C 0.177 3.823 17 O -0.146 6.146 18 C -0.397 4.397 19 H 0.100 0.900 20 C 0.045 3.955 21 N -0.834 5.834 22 Si 0.944 3.056 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.505 5.505 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 6.244 0.228 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.085 4.085 3 C -0.163 4.163 4 C -0.356 4.356 5 S 0.435 5.565 6 C -0.235 4.235 7 C -0.049 4.049 8 N -0.083 5.083 9 O 0.057 5.943 10 C 0.055 3.945 11 C -0.139 4.139 12 C -0.030 4.030 13 C -0.242 4.242 14 C -0.064 4.064 15 C -0.250 4.250 16 C 0.118 3.882 17 O -0.044 6.044 18 C -0.472 4.472 19 H 0.117 0.883 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.768 3.232 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 N -0.241 5.241 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.185 0.815 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.906 6.568 0.226 12.733 hybrid contribution -1.949 0.039 -0.050 1.950 sum 8.957 6.607 0.176 11.131 Atomic orbital electron populations 1.20709 0.88919 1.03680 1.02965 1.19134 0.98109 0.90680 1.00594 1.19882 0.92763 0.99025 1.04627 1.25898 0.99888 0.99938 1.09844 1.84300 1.02701 0.98362 1.71128 1.21143 0.97041 0.90795 1.14523 1.22481 0.86458 0.92564 1.03393 1.75003 1.18315 0.93721 1.21221 1.85668 1.31624 1.12357 1.64694 1.25995 0.79407 0.95819 0.93285 1.16285 0.92924 0.82462 1.22261 1.20720 0.93460 0.95651 0.93181 1.20545 0.98546 0.92441 1.12636 1.21002 0.92259 0.98924 0.94175 1.21101 0.97538 0.94780 1.11591 1.19269 0.85416 0.91690 0.91845 1.83967 1.09904 1.36412 1.74146 1.21534 0.84623 0.88497 1.52588 0.88295 1.25411 0.97525 0.97465 0.95882 1.70075 1.19776 1.14569 1.42110 0.85601 0.79698 0.79381 0.78524 1.18823 1.19898 1.19886 1.72212 1.30159 0.96567 1.25162 0.90866 0.89480 0.91544 0.83864 0.81453 0.85468 0.86522 0.86663 0.84581 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 9.59 36.01 0.35 -1.18 16 2 C -0.07 -1.04 5.83 -105.97 -0.62 -1.66 16 3 C -0.13 -1.56 9.96 -41.32 -0.41 -1.97 16 4 C -0.22 -2.37 11.23 29.15 0.33 -2.04 16 5 S 0.17 2.30 23.32 -107.50 -2.51 -0.21 16 6 C -0.12 -2.00 6.44 -36.90 -0.24 -2.24 16 7 C 0.22 4.58 7.90 -156.22 -1.23 3.35 16 8 N -0.37 -8.50 9.65 31.23 0.30 -8.19 16 9 O 0.12 2.92 9.98 -2.05 -0.02 2.90 16 10 C 0.27 6.02 7.95 -13.84 -0.11 5.91 16 11 C -0.13 -2.86 5.89 -104.81 -0.62 -3.48 16 12 C -0.01 -0.18 9.70 -39.20 -0.38 -0.56 16 13 C -0.22 -3.49 10.03 -39.60 -0.40 -3.89 16 14 C -0.04 -0.72 10.03 -39.53 -0.40 -1.12 16 15 C -0.23 -4.51 9.16 -39.44 -0.36 -4.87 16 16 C 0.18 4.03 6.66 -38.63 -0.26 3.77 16 17 O -0.15 -3.87 8.20 -17.90 -0.15 -4.01 16 18 C -0.40 -10.24 9.49 30.89 0.29 -9.95 16 19 H 0.10 2.31 5.21 -52.49 -0.27 2.03 16 20 C 0.05 1.16 5.49 -17.51 -0.10 1.07 16 21 N -0.83 -23.15 13.67 55.48 0.76 -22.39 16 22 Si 0.94 19.14 29.55 -169.99 -5.02 14.12 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 N -0.51 -10.63 11.28 -10.25 -0.12 -10.75 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.53 5.96 -51.93 -0.31 1.22 16 29 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.13 2.06 7.87 -52.49 -0.41 1.65 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.14 2.58 5.64 -52.49 -0.30 2.29 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -29.74 333.79 -8.84 -38.57 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.96 Total: 3.78 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -4.15 Total: -18.85 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.94 Total: -41.33 kcal Atomic # 8 Polarization: -0.95 SS G_CDS: -0.17 Total: -1.12 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.51 Total: -0.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.74 -8.84 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810316148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.111 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds