Wall clock time and date at job start Tue Mar 31 2020 14:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37828 * 122.63921 * 2 1 4 4 C 1.33720 * 115.07125 * 179.80473 * 3 2 1 5 5 S 1.75867 * 109.74110 * 0.43909 * 4 3 2 6 6 C 1.34844 * 122.63581 * 180.28805 * 2 1 3 7 7 C 1.47758 * 125.26950 * 0.02562 * 6 2 1 8 8 N 1.31124 * 126.34680 * 0.02562 * 7 6 2 9 9 O 1.21274 * 110.30406 * 180.02562 * 8 7 6 10 10 C 1.34253 * 109.96692 * 359.97438 * 9 8 7 11 11 C 1.47612 * 126.53914 * 179.97438 * 10 9 8 12 12 C 1.39605 * 120.18896 * 180.02562 * 11 10 9 13 13 C 1.37879 * 119.91776 * 179.97438 * 12 11 10 14 14 C 1.38542 * 120.31427 * 0.02562 * 13 12 11 15 15 C 1.38065 * 120.38713 * 359.95711 * 14 13 12 16 16 C 1.38794 * 120.07240 * 359.78716 * 15 14 13 17 17 O 1.35567 * 120.15852 * 180.23336 * 16 15 14 18 18 C 1.34812 * 116.99873 * 354.40142 * 17 16 15 19 19 H 1.08001 * 120.00044 * 5.06371 * 18 17 16 20 20 C 1.38678 * 120.00164 * 185.06351 * 18 17 16 21 21 N 1.31538 * 119.99962 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00252 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46919 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47466 * 119.99819 * 22 20 18 25 25 H 1.48499 * 109.47193 * 240.00119 * 22 20 18 26 26 N 1.32034 * 106.92065 * 359.73592 * 10 9 8 27 27 H 1.08993 * 109.47047 * 269.71218 * 1 2 3 28 28 H 1.08997 * 109.46799 * 149.70783 * 1 2 3 29 29 H 1.09000 * 109.46361 * 29.70737 * 1 2 3 30 30 H 1.08000 * 122.46361 * 0.02562 * 3 2 1 31 31 H 1.07993 * 125.12892 * 180.19408 * 4 3 2 32 32 H 1.07997 * 120.04310 * 0.02562 * 12 11 10 33 33 H 1.08001 * 119.84111 * 180.02562 * 13 12 11 34 34 H 1.07992 * 119.80588 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.96301 * 180.02562 * 15 14 13 36 36 H 0.96998 * 120.00213 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2504 1.1606 0.0000 4 6 3.5760 0.9845 0.0041 5 16 3.9468 -0.7346 -0.0043 6 6 2.2343 -1.1355 -0.0057 7 6 1.6785 -2.5046 -0.0131 8 7 0.4076 -2.8274 -0.0158 9 8 0.2797 -4.0334 -0.0215 10 6 1.4862 -4.6223 -0.0238 11 6 1.7557 -6.0736 -0.0299 12 6 3.0703 -6.5434 -0.0311 13 6 3.3156 -7.9002 -0.0363 14 6 2.2631 -8.8011 -0.0410 15 6 0.9581 -8.3505 -0.0396 16 6 0.6927 -6.9882 -0.0290 17 8 -0.5880 -6.5439 -0.0228 18 6 -1.5584 -7.4718 -0.1446 19 1 -1.3033 -8.5212 -0.1589 20 6 -2.8840 -7.0789 -0.2515 21 7 -3.1948 -5.8009 -0.2335 22 14 -4.2285 -8.3646 -0.4210 23 1 -3.6211 -9.7197 -0.4140 24 1 -5.1768 -8.2420 0.7152 25 1 -4.9563 -8.1544 -1.6982 26 7 2.3856 -3.6557 -0.0246 27 1 -0.3633 -0.0052 1.0276 28 1 -0.3633 -0.8873 -0.5184 29 1 -0.3632 0.8926 -0.5093 30 1 1.7957 2.1403 0.0004 31 1 4.3083 1.7782 0.0078 32 1 3.8941 -5.8451 -0.0270 33 1 4.3331 -8.2624 -0.0368 34 1 2.4647 -9.8621 -0.0456 35 1 0.1429 -9.0588 -0.0429 36 1 -4.1220 -5.5261 -0.3079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810316148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:26 Heat of formation + Delta-G solvation = 86.836418 kcal Electronic energy + Delta-G solvation = -24302.492970 eV Core-core repulsion = 20654.084868 eV Total energy + Delta-G solvation = -3648.408101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.31745 -40.92086 -39.47767 -38.33099 -36.68173 -34.51912 -34.23224 -31.97945 -31.12266 -30.51865 -29.23145 -27.45346 -25.55949 -24.96690 -23.77418 -23.16256 -22.53541 -20.05442 -19.94603 -18.98844 -18.93678 -18.61727 -17.58946 -16.98295 -16.46195 -16.37829 -16.07003 -15.71246 -15.35375 -15.15197 -14.87063 -14.70855 -14.44323 -14.07144 -13.65921 -13.56276 -13.42815 -13.28099 -13.18621 -12.77477 -12.76515 -12.61581 -12.59847 -12.35632 -12.08857 -12.06219 -11.74558 -11.70600 -11.34415 -10.86344 -9.85378 -9.56239 -9.40358 -9.08372 -8.49407 -6.18686 -0.60891 -0.36562 0.39673 0.63715 0.84087 0.94678 1.31876 1.36692 1.45418 1.55276 1.81839 1.87427 2.13704 2.41041 2.78668 3.09476 3.10764 3.27780 3.86879 3.92528 4.08281 4.22975 4.28183 4.32633 4.47788 4.52332 4.60925 4.64462 4.64743 4.80951 4.87975 4.97355 5.03317 5.05270 5.12799 5.36384 5.44339 5.49823 5.54118 5.64669 5.92500 6.06957 6.91416 7.11513 7.63862 8.70176 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.003795 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.737804 B = 7375.907198 C = 9382.905766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.177 4.177 5 S 0.172 5.828 6 C -0.181 4.181 7 C 0.234 3.766 8 N -0.403 5.403 9 O 0.071 5.929 10 C 0.256 3.744 11 C -0.152 4.152 12 C -0.015 4.015 13 C -0.191 4.191 14 C -0.027 4.027 15 C -0.243 4.243 16 C 0.151 3.849 17 O -0.200 6.200 18 C -0.418 4.418 19 H 0.116 0.884 20 C -0.016 4.016 21 N -0.901 5.901 22 Si 1.019 2.981 23 H -0.243 1.243 24 H -0.271 1.271 25 H -0.272 1.272 26 N -0.504 5.504 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.180 0.820 31 H 0.214 0.786 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.137 0.863 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.775 6.092 0.183 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.174 4.174 4 C -0.314 4.314 5 S 0.438 5.562 6 C -0.300 4.300 7 C -0.036 4.036 8 N -0.118 5.118 9 O 0.017 5.983 10 C 0.043 3.957 11 C -0.157 4.157 12 C -0.034 4.034 13 C -0.210 4.210 14 C -0.046 4.046 15 C -0.263 4.263 16 C 0.095 3.905 17 O -0.102 6.102 18 C -0.494 4.494 19 H 0.133 0.867 20 C -0.216 4.216 21 N -0.537 5.537 22 Si 0.838 3.162 23 H -0.165 1.165 24 H -0.197 1.197 25 H -0.197 1.197 26 N -0.240 5.240 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.198 0.802 31 H 0.231 0.769 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.155 0.845 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.598 6.332 0.184 15.913 hybrid contribution -2.571 0.211 -0.023 2.579 sum 12.027 6.543 0.161 13.692 Atomic orbital electron populations 1.20721 0.89440 1.03499 1.02817 1.19503 0.98186 0.91467 0.98174 1.20148 0.92952 0.99145 1.05116 1.26476 1.00393 0.99015 1.05541 1.84199 1.00146 1.00832 1.71039 1.21398 0.99631 0.89520 1.19432 1.23155 0.85896 0.94071 1.00492 1.75021 1.19700 0.93073 1.23960 1.85641 1.32961 1.13393 1.66264 1.26526 0.79236 0.96876 0.93059 1.16815 0.94329 0.81841 1.22710 1.21073 0.92102 0.97419 0.92846 1.21179 1.00857 0.91020 1.07915 1.21552 0.90434 1.01608 0.90955 1.21316 0.99614 0.93245 1.12076 1.19868 0.84871 0.93628 0.92163 1.83983 1.11303 1.37415 1.77522 1.22058 0.85155 0.89296 1.52854 0.86708 1.26666 0.99955 0.99600 0.95358 1.70253 1.20002 1.17223 1.46185 0.84521 0.76141 0.77256 0.78266 1.16546 1.19667 1.19722 1.72200 1.29746 0.96511 1.25539 0.90948 0.93036 0.88284 0.80240 0.76885 0.83798 0.81527 0.81779 0.84509 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.20 9.59 71.24 0.68 -2.51 16 2 C -0.06 -1.64 5.83 -20.74 -0.12 -1.76 16 3 C -0.14 -2.91 9.96 21.15 0.21 -2.70 16 4 C -0.18 -3.07 11.23 66.79 0.75 -2.32 16 5 S 0.17 4.39 23.32 -56.49 -1.32 3.07 16 6 C -0.18 -6.34 6.44 24.01 0.15 -6.19 16 7 C 0.23 10.32 7.90 137.03 1.08 11.40 16 8 N -0.40 -20.06 9.65 -57.35 -0.55 -20.61 16 9 O 0.07 3.86 9.98 86.91 0.87 4.73 16 10 C 0.26 12.36 7.95 87.21 0.69 13.05 16 11 C -0.15 -6.71 5.89 -19.99 -0.12 -6.83 16 12 C -0.01 -0.50 9.70 22.51 0.22 -0.28 16 13 C -0.19 -5.11 10.03 22.26 0.22 -4.89 16 14 C -0.03 -0.76 10.03 22.30 0.22 -0.54 16 15 C -0.24 -9.36 9.16 22.36 0.20 -9.16 16 16 C 0.15 7.17 6.66 22.89 0.15 7.32 16 17 O -0.20 -11.53 8.20 -2.79 -0.02 -11.55 16 18 C -0.42 -23.02 9.49 67.93 0.64 -22.38 16 19 H 0.12 5.58 5.21 -2.91 -0.02 5.57 16 20 C -0.02 -0.85 5.49 84.84 0.47 -0.39 16 21 N -0.90 -54.66 13.67 21.62 0.30 -54.37 16 22 Si 1.02 41.15 29.55 68.60 2.03 43.18 16 23 H -0.24 -8.75 7.11 99.48 0.71 -8.05 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 N -0.50 -22.27 11.28 -302.06 -3.41 -25.68 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.96 5.96 -2.39 -0.01 1.94 16 29 H 0.10 2.25 8.13 -2.39 -0.02 2.23 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.14 4.36 7.87 -2.91 -0.02 4.34 16 33 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 35 H 0.14 5.17 5.64 -2.91 -0.02 5.15 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -75.97 333.79 4.51 -71.46 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.15 Total: 17.94 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 5.47 Total: -28.17 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.67 Total: -100.66 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.84 Total: -6.82 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.32 Total: 3.07 kcal Total: -75.97 4.51 -71.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810316148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.297 kcal (2) G-P(sol) polarization free energy of solvation -75.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds