Wall clock time and date at job start Tue Mar 31 2020 14:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99968 * 2 1 4 4 H 1.48491 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46844 * 300.00314 * 3 2 1 6 6 H 1.48501 * 109.47172 * 60.00094 * 3 2 1 7 7 C 1.37871 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46858 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46858 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99936 * 0.02562 * 11 10 9 13 13 O 1.34225 * 119.99495 * 179.97438 * 11 10 9 14 14 C 1.45206 * 116.99618 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47122 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47016 * 180.02562 * 15 14 13 17 17 S 1.81408 * 109.46995 * 180.02562 * 16 15 14 18 18 C 1.76200 * 102.99890 * 180.02562 * 17 16 15 19 19 C 1.38943 * 120.08321 * 359.96994 * 18 17 16 20 20 C 1.38095 * 119.93341 * 180.02562 * 19 18 17 21 21 C 1.38315 * 120.09588 * 0.02843 * 20 19 18 22 22 C 1.38285 * 120.17055 * 359.97438 * 21 20 19 23 23 C 1.38189 * 120.06580 * 359.97438 * 22 21 20 24 24 Cl 1.73605 * 120.05138 * 180.02562 * 23 22 21 25 25 H 0.97004 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47013 * 60.00327 * 9 7 2 27 27 H 1.08998 * 109.47414 * 299.99599 * 9 7 2 28 28 H 1.08993 * 109.47005 * 60.00179 * 10 9 7 29 29 H 1.08998 * 109.46972 * 300.00105 * 10 9 7 30 30 H 1.09006 * 109.47049 * 60.00165 * 14 13 11 31 31 H 1.09000 * 109.47322 * 300.00088 * 14 13 11 32 32 H 1.09006 * 109.47116 * 60.00093 * 15 14 13 33 33 H 1.09000 * 109.47002 * 300.00171 * 15 14 13 34 34 H 1.08992 * 109.47057 * 60.00003 * 16 15 14 35 35 H 1.09000 * 109.47233 * 299.99856 * 16 15 14 36 36 H 1.08003 * 120.03525 * 0.05021 * 19 18 17 37 37 H 1.08000 * 119.95248 * 180.29889 * 20 19 18 38 38 H 1.08003 * 119.91246 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.97004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4918 -4.9672 -0.0012 12 8 0.2836 -4.9672 -0.0003 13 8 2.1630 -6.1296 -0.0026 14 6 1.3722 -7.3474 -0.0013 15 6 2.3042 -8.5607 -0.0026 16 6 1.4709 -9.8439 -0.0019 17 16 2.5760 -11.2825 -0.0027 18 6 1.4559 -12.6427 -0.0025 19 6 0.0851 -12.4160 -0.0012 20 6 -0.7900 -13.4843 -0.0006 21 6 -0.3037 -14.7792 -0.0005 22 6 1.0598 -15.0095 -0.0017 23 6 1.9417 -13.9456 -0.0035 24 17 3.6534 -14.2352 -0.0057 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 0.7417 -7.3721 -0.8902 31 1 0.7450 -7.3724 0.8898 32 1 2.9344 -8.5358 0.8864 33 1 2.9317 -8.5359 -0.8936 34 1 0.8411 -9.8686 -0.8911 35 1 0.8431 -9.8689 0.8888 36 1 -0.2957 -11.4054 -0.0012 37 1 -1.8555 -13.3085 -0.0045 38 1 -0.9907 -15.6125 0.0004 39 1 1.4360 -16.0219 -0.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812613952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:25 Heat of formation + Delta-G solvation = -92.390103 kcal Electronic energy + Delta-G solvation = -21054.169829 eV Core-core repulsion = 17499.097377 eV Total energy + Delta-G solvation = -3555.072453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99958 -39.58903 -36.89229 -36.54556 -34.21482 -33.60065 -31.77724 -31.19675 -31.13021 -27.48379 -25.73200 -23.52883 -23.34149 -22.27059 -21.70847 -19.83784 -18.37347 -17.40756 -16.97981 -16.67657 -16.39693 -16.00649 -15.64194 -15.35369 -15.13255 -14.48726 -14.41069 -14.29999 -14.24367 -13.60231 -13.04776 -12.73359 -12.48510 -12.32239 -12.18813 -12.03247 -12.00336 -11.64838 -11.52325 -11.36355 -11.18342 -10.99035 -10.63922 -10.52608 -10.38771 -10.30685 -10.07364 -9.96301 -9.58362 -9.35601 -9.18287 -8.39969 -7.87477 -6.03543 -4.08425 0.53670 0.65203 0.91157 1.63813 1.97202 2.78089 3.02309 3.03244 3.29712 3.37237 3.40997 4.18251 4.38388 4.39815 4.41679 4.48873 4.69375 4.71528 4.78232 4.91704 4.96436 5.08227 5.21717 5.25375 5.32118 5.48903 5.52225 5.63688 5.65363 5.81323 5.85389 6.09745 6.17148 6.17461 6.60887 6.89350 7.64501 7.70717 7.95812 8.22145 8.37730 8.98917 9.55916 11.07505 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.001593 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.349985 B =17568.584284 C =18318.580944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.458 3.542 12 O -0.506 6.506 13 O -0.365 6.365 14 C 0.070 3.930 15 C -0.103 4.103 16 C -0.117 4.117 17 S -0.072 6.072 18 C -0.081 4.081 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.116 4.116 22 C -0.093 4.093 23 C -0.025 4.025 24 Cl -0.053 7.053 25 H 0.261 0.739 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 -32.935 -0.006 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.301 3.699 12 O -0.392 6.392 13 O -0.284 6.284 14 C -0.006 4.006 15 C -0.142 4.142 16 C -0.266 4.266 17 S 0.175 5.825 18 C -0.195 4.195 19 C -0.149 4.149 20 C -0.114 4.114 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.058 4.058 24 Cl -0.024 7.024 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.121 -32.742 -0.008 32.890 hybrid contribution -1.103 0.719 0.001 1.317 sum 2.017 -32.023 -0.007 32.087 Atomic orbital electron populations 1.70004 1.06108 1.26665 1.50029 1.25025 0.94861 0.99374 0.95102 0.86480 0.80031 0.83514 0.77618 1.19632 1.20967 1.20963 1.21197 0.93137 0.90615 1.51686 0.92210 1.19033 0.93244 0.89325 0.98895 1.21778 1.00687 0.87548 1.04081 1.24799 0.87938 0.85598 0.71544 1.90634 1.15918 1.87654 1.45018 1.86547 1.42022 1.14872 1.84914 1.22781 0.93252 0.81865 1.02718 1.21189 0.98102 0.89621 1.05312 1.23670 1.01128 0.95437 1.06352 1.85909 1.10466 0.95003 1.91168 1.21776 0.97196 0.95954 1.04601 1.21231 0.90929 1.00413 1.02318 1.21207 1.00122 0.92269 0.97786 1.21173 0.94639 0.97398 1.00526 1.21033 0.92790 0.98111 0.99333 1.20428 0.85762 0.92765 1.06849 1.98390 1.11394 1.95900 1.96705 0.92896 0.95588 0.95581 0.88888 0.88876 0.91246 0.91255 0.89502 0.89509 0.88733 0.88738 0.84805 0.84913 0.84778 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 11 C 0.46 8.85 7.96 36.01 0.29 9.13 16 12 O -0.51 -11.31 15.73 -18.75 -0.29 -11.61 16 13 O -0.37 -5.79 10.22 -39.24 -0.40 -6.19 16 14 C 0.07 0.86 5.47 37.16 0.20 1.06 16 15 C -0.10 -0.95 5.60 -26.73 -0.15 -1.10 16 16 C -0.12 -0.90 4.33 37.16 0.16 -0.74 16 17 S -0.07 -0.65 20.83 -107.50 -2.24 -2.89 16 18 C -0.08 -0.72 6.11 -39.02 -0.24 -0.96 16 19 C -0.12 -0.93 9.36 -39.37 -0.37 -1.29 16 20 C -0.09 -0.57 10.04 -39.61 -0.40 -0.97 16 21 C -0.12 -0.65 10.04 -39.54 -0.40 -1.05 16 22 C -0.09 -0.62 9.82 -39.58 -0.39 -1.01 16 23 C -0.02 -0.21 6.34 -39.30 -0.25 -0.46 16 24 Cl -0.05 -0.47 27.84 -51.86 -1.44 -1.91 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.65 7.75 -51.93 -0.40 0.24 16 35 H 0.09 0.64 7.75 -51.92 -0.40 0.24 16 36 H 0.13 0.82 5.88 -52.48 -0.31 0.52 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -32.73 365.06 -10.69 -43.42 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -5.30 Total: -4.13 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.23 Total: -12.36 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.70 Total: -17.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.24 Total: -2.89 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.44 Total: -1.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.73 -10.69 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.968 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds