Wall clock time and date at job start Tue Mar 31 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37721 * 119.90142 * 2 1 4 4 C 1.39966 * 119.86137 * 180.02562 * 3 2 1 5 5 C 1.46917 * 120.15575 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00058 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.00015 * 359.97438 * 5 4 3 8 8 O 1.45206 * 109.47147 * 180.02562 * 7 5 4 9 9 C 1.34228 * 117.00001 * 180.02562 * 8 7 5 10 10 O 1.20826 * 120.00094 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99603 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.46592 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47109 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99697 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00162 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00048 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00051 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47089 * 90.00105 * 17 15 13 19 19 H 1.48494 * 109.47506 * 209.99872 * 17 15 13 20 20 H 1.48502 * 109.47133 * 330.00470 * 17 15 13 21 21 C 1.40103 * 119.68650 * 0.25226 * 4 3 2 22 22 Cl 1.73593 * 120.09377 * 179.72899 * 21 4 3 23 23 C 1.37914 * 119.81139 * 359.51295 * 21 4 3 24 24 C 1.38660 * 120.13365 * 0.47158 * 23 21 4 25 25 F 1.35099 * 119.84071 * 179.76267 * 24 23 21 26 26 H 1.08999 * 109.47250 * 90.00362 * 1 2 3 27 27 H 1.09002 * 109.46552 * 209.99505 * 1 2 3 28 28 H 1.08996 * 109.47243 * 329.99099 * 1 2 3 29 29 H 1.07996 * 120.07216 * 0.04327 * 3 2 1 30 30 H 1.09001 * 109.46980 * 60.00083 * 7 5 4 31 31 H 1.09004 * 109.47113 * 300.00064 * 7 5 4 32 32 H 1.08998 * 109.46942 * 299.99225 * 11 9 8 33 33 H 1.08994 * 109.47301 * 60.00009 * 11 9 8 34 34 H 1.09001 * 109.47495 * 299.99553 * 12 11 9 35 35 H 1.08994 * 109.47783 * 59.99733 * 12 11 9 36 36 H 0.96994 * 120.00093 * 180.02562 * 16 15 13 37 37 H 1.08002 * 119.93645 * 180.20671 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.1939 0.0000 4 6 3.5932 1.1929 -0.0005 5 6 4.3322 2.4627 -0.0011 6 8 5.5449 2.4586 -0.0011 7 6 3.5831 3.7704 -0.0017 8 8 4.5305 4.8709 -0.0028 9 6 4.0217 6.1130 -0.0029 10 8 2.8244 6.2754 -0.0026 11 6 4.9438 7.3049 -0.0046 12 6 4.1149 8.5909 -0.0037 13 6 5.0370 9.7829 -0.0048 14 1 6.1071 9.6377 -0.0064 15 6 4.5143 11.0588 -0.0048 16 7 5.3190 12.0990 -0.0062 17 14 2.6633 11.3099 -0.0042 18 1 2.1733 11.3767 1.3961 19 1 2.3355 12.5778 -0.7042 20 1 2.0096 10.1748 -0.7037 21 6 4.2862 -0.0247 -0.0064 22 17 6.0221 -0.0382 -0.0143 23 6 3.5854 -1.2125 -0.0015 24 6 2.1989 -1.2027 -0.0006 25 9 1.5183 -2.3697 -0.0006 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6532 2.1289 0.0007 30 1 2.9567 3.8307 0.8883 31 1 2.9566 3.8299 -0.8917 32 1 5.5735 7.2784 0.8847 33 1 5.5715 7.2774 -0.8952 34 1 3.4849 8.6178 -0.8928 35 1 3.4874 8.6182 0.8871 36 1 4.9514 12.9966 -0.0059 37 1 4.1176 -2.1523 -0.0027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:26 Heat of formation + Delta-G solvation = -167.544061 kcal Electronic energy + Delta-G solvation = -24050.509366 eV Core-core repulsion = 19925.964817 eV Total energy + Delta-G solvation = -4124.544549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.20675 -41.81176 -41.03251 -39.45619 -37.71259 -37.51638 -35.61800 -33.83120 -33.48105 -32.96609 -30.03422 -28.13272 -27.94856 -25.16295 -23.95007 -23.07508 -21.46220 -21.01123 -19.41313 -19.00834 -18.53160 -18.22004 -17.89933 -17.50677 -17.01494 -16.99078 -16.25953 -16.20871 -15.74995 -15.63478 -15.09149 -15.08142 -14.72520 -14.59383 -14.39571 -14.18274 -13.97003 -13.84248 -13.64912 -13.30460 -13.01201 -12.90706 -12.44238 -12.36561 -12.23147 -12.22608 -12.01441 -11.86937 -11.76292 -11.51305 -11.40171 -10.77085 -10.68861 -10.25005 -9.80284 -8.29779 -6.34729 -0.84620 -0.19819 0.85094 1.00592 1.17598 1.37607 1.38928 1.41720 1.52900 2.20914 2.36878 2.68258 2.94139 3.05609 3.30011 3.54093 3.74759 3.81968 3.91793 4.04378 4.07634 4.14100 4.34142 4.39761 4.43583 4.52720 4.65335 4.73062 4.77181 4.85085 5.06383 5.11149 5.21182 5.32160 5.38637 5.46520 5.59982 6.22372 6.24389 6.68600 6.77374 7.30361 8.85963 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002322 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.281950 B =12055.622946 C =13356.845687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C -0.025 4.025 4 C -0.172 4.172 5 C 0.396 3.604 6 O -0.439 6.439 7 C 0.011 3.989 8 O -0.350 6.350 9 C 0.474 3.526 10 O -0.529 6.529 11 C -0.094 4.094 12 C 0.004 3.996 13 C -0.534 4.534 14 H 0.047 0.953 15 C 0.011 3.989 16 N -0.945 5.945 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.252 1.252 21 C 0.022 3.978 22 Cl -0.037 7.037 23 C -0.154 4.154 24 C 0.140 3.860 25 F -0.125 7.125 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.180 0.820 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.022 0.978 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 -32.463 -0.018 34.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.120 4.120 3 C -0.044 4.044 4 C -0.174 4.174 5 C 0.272 3.728 6 O -0.312 6.312 7 C -0.063 4.063 8 O -0.267 6.267 9 C 0.319 3.681 10 O -0.418 6.418 11 C -0.132 4.132 12 C -0.034 4.034 13 C -0.572 4.572 14 H 0.065 0.935 15 C -0.187 4.187 16 N -0.585 5.585 17 Si 0.767 3.233 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.176 1.176 21 C -0.006 4.006 22 Cl -0.007 7.007 23 C -0.173 4.173 24 C 0.120 3.880 25 F -0.103 7.103 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.197 0.803 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.483 -32.322 -0.021 33.979 hybrid contribution -0.275 0.203 0.016 0.342 sum -10.758 -32.119 -0.005 33.873 Atomic orbital electron populations 1.20907 0.87137 1.05031 1.04453 1.20266 0.99156 0.90747 1.01838 1.21520 0.90556 0.99736 0.92539 1.20054 0.95037 0.92236 1.10101 1.22185 0.88977 0.89087 0.72582 1.90685 1.16538 1.89439 1.34556 1.23564 0.92219 0.83170 1.07351 1.86611 1.40788 1.15073 1.84191 1.24246 0.88935 0.84061 0.70855 1.90609 1.17865 1.86587 1.46759 1.21350 0.97668 0.87895 1.06264 1.19323 0.95279 0.91355 0.97443 1.21360 0.94130 0.90800 1.50885 0.93484 1.25879 1.03037 0.95717 0.94070 1.70035 1.37250 0.99040 1.52183 0.85749 0.80142 0.78093 0.79277 1.19173 1.20712 1.17598 1.20952 0.86378 0.93603 0.99656 1.98448 1.07607 1.98723 1.95926 1.21064 0.92625 0.98860 1.04776 1.17706 0.89081 0.81727 0.99476 1.91548 1.79603 1.45984 1.93147 0.89096 0.90549 0.88601 0.80275 0.85410 0.85447 0.87139 0.87147 0.95998 0.96124 0.92334 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.83 71.24 0.70 0.09 16 2 C -0.12 -1.12 5.88 -19.86 -0.12 -1.24 16 3 C -0.03 -0.25 9.11 22.57 0.21 -0.05 16 4 C -0.17 -2.76 5.87 -20.13 -0.12 -2.88 16 5 C 0.40 8.37 7.18 27.96 0.20 8.57 16 6 O -0.44 -12.55 14.12 15.77 0.22 -12.33 16 7 C 0.01 0.22 4.55 71.24 0.32 0.54 16 8 O -0.35 -10.31 9.76 -45.04 -0.44 -10.75 16 9 C 0.47 16.03 7.96 71.24 0.57 16.59 16 10 O -0.53 -19.52 15.73 21.96 0.35 -19.18 16 11 C -0.09 -3.54 5.75 29.85 0.17 -3.36 16 12 C 0.00 0.17 3.33 29.85 0.10 0.27 16 13 C -0.53 -30.10 9.66 25.60 0.25 -29.86 16 14 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 15 C 0.01 0.62 5.47 84.65 0.46 1.08 16 16 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 17 Si 0.94 44.57 27.47 68.60 1.88 46.45 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 21 C 0.02 0.37 6.36 22.65 0.14 0.51 16 22 Cl -0.04 -0.76 26.03 -2.72 -0.07 -0.83 16 23 C -0.15 -2.00 9.79 22.29 0.22 -1.79 16 24 C 0.14 1.66 7.25 22.49 0.16 1.82 16 25 F -0.12 -1.54 16.46 44.97 0.74 -0.80 16 26 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.08 0.41 7.63 -2.39 -0.02 0.39 16 28 H 0.10 0.24 8.08 -2.39 -0.02 0.22 16 29 H 0.18 0.80 7.04 -2.91 -0.02 0.77 16 30 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 31 H 0.13 2.00 8.08 -2.38 -0.02 1.98 16 32 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 33 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 34 H 0.02 1.04 7.15 -2.39 -0.02 1.02 16 35 H 0.02 0.96 7.53 -2.39 -0.02 0.95 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -72.54 344.63 7.31 -65.23 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 1.06 Total: 0.09 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.27 Total: -9.70 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.30 Total: -58.20 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: 0.13 Total: -42.25 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.74 Total: -0.80 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.83 kcal Total: -72.54 7.31 -65.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.309 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds