Wall clock time and date at job start Tue Mar 31 2020 14:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47010 * 239.99882 * 3 2 1 5 5 H 1.48500 * 109.47315 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47178 * 119.99915 * 3 2 1 7 7 C 1.37875 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99722 * 175.05660 * 7 2 1 9 9 C 1.50697 * 120.00129 * 355.34373 * 7 2 1 10 10 C 1.53008 * 115.54490 * 279.19871 * 9 7 2 11 11 O 1.45203 * 109.46916 * 294.87971 * 10 9 7 12 12 C 1.34226 * 116.99995 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00183 * 180.02562 * 12 11 10 15 15 O 1.42899 * 109.47264 * 180.02562 * 14 12 11 16 16 C 1.35922 * 117.00323 * 180.02562 * 15 14 12 17 17 C 1.38743 * 120.03535 * 179.97438 * 16 15 14 18 18 C 1.38146 * 120.00855 * 180.02562 * 17 16 15 19 19 C 1.38331 * 120.06250 * 359.97438 * 18 17 16 20 20 Cl 1.73608 * 119.96640 * 180.02562 * 19 18 17 21 21 C 1.38565 * 120.06600 * 0.04239 * 19 18 17 22 22 F 1.35101 * 120.00498 * 179.97438 * 21 19 18 23 23 C 1.38366 * 119.99207 * 359.68737 * 21 19 18 24 24 C 1.52997 * 117.50443 * 133.49263 * 9 7 2 25 25 C 1.52998 * 117.50221 * 64.86219 * 9 7 2 26 26 H 0.96995 * 120.00023 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47233 * 54.88091 * 10 9 7 28 28 H 1.09002 * 109.46764 * 174.88318 * 10 9 7 29 29 H 1.09004 * 109.46818 * 300.00054 * 14 12 11 30 30 H 1.08992 * 109.47068 * 60.00017 * 14 12 11 31 31 H 1.08008 * 119.99544 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.96624 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.03621 * 180.31565 * 23 21 19 34 34 H 1.09007 * 117.49712 * 359.97438 * 24 9 7 35 35 H 1.08995 * 117.50458 * 145.01883 * 24 9 7 36 36 H 1.09004 * 117.49948 * 214.97742 * 25 9 7 37 37 H 1.08998 * 117.49533 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1957 -0.0801 9 6 1.2548 -2.4969 0.1071 10 6 0.8316 -2.9009 1.5208 11 8 2.0131 -3.1553 2.3256 12 6 1.8140 -3.5224 3.6013 13 8 0.6897 -3.6282 4.0311 14 6 2.9927 -3.8027 4.4974 15 8 2.5262 -4.1727 5.7964 16 6 3.4692 -4.4600 6.7322 17 6 3.0862 -4.8259 8.0145 18 6 4.0451 -5.1173 8.9653 19 6 5.3877 -5.0452 8.6402 20 17 6.5907 -5.4125 9.8368 21 6 5.7734 -4.6797 7.3605 22 9 7.0850 -4.6091 7.0444 23 6 4.8150 -4.3927 6.4046 24 6 1.6417 -3.6160 -0.8619 25 6 0.3185 -2.8695 -1.0442 26 1 -0.4850 0.8400 -0.0004 27 1 0.2520 -2.0949 1.9709 28 1 0.2227 -3.8038 1.4737 29 1 3.5825 -4.6178 4.0778 30 1 3.6114 -2.9087 4.5742 31 1 2.0382 -4.8830 8.2695 32 1 3.7462 -5.4017 9.9634 33 1 5.1148 -4.1127 5.4055 34 1 2.4382 -3.4096 -1.5769 35 1 1.5948 -4.6403 -0.4924 36 1 -0.5987 -3.4029 -0.7945 37 1 0.2445 -2.1719 -1.8785 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815964535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:44 Heat of formation + Delta-G solvation = -118.921327 kcal Electronic energy + Delta-G solvation = -24317.900941 eV Core-core repulsion = 20195.464832 eV Total energy + Delta-G solvation = -4122.436109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.34478 -40.77762 -39.75289 -38.00042 -36.88683 -36.53872 -35.37538 -32.04465 -31.33959 -30.69842 -28.96304 -26.67748 -25.28929 -23.55037 -22.95677 -21.31128 -20.69588 -19.37412 -19.13294 -17.57414 -17.19036 -16.92041 -16.89034 -16.48988 -16.20703 -16.10281 -15.50514 -15.24740 -14.65019 -14.56914 -14.21493 -13.83553 -13.54744 -13.37966 -13.10876 -12.51892 -12.44233 -12.28838 -11.99964 -11.97550 -11.68286 -11.29181 -11.02917 -11.00116 -10.95845 -10.62271 -10.36535 -10.18411 -10.02885 -9.60235 -9.48939 -9.01521 -8.63007 -8.53701 -8.28570 -6.13760 -4.20204 0.57534 0.60713 1.65923 2.13699 2.45662 2.97896 3.25426 3.31061 3.33003 3.47216 3.62303 4.13983 4.32857 4.39354 4.56193 4.73958 4.81970 4.90537 4.98303 5.14849 5.25656 5.34267 5.45463 5.53713 5.64222 5.85667 6.01831 6.12666 6.21426 6.39729 6.53330 6.64704 6.78250 6.96446 7.04379 7.24677 7.40229 7.79042 8.14226 8.30540 8.81191 9.46111 10.95196 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.002376 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.001088 B =11784.038646 C =12341.848685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.492 4.492 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.118 3.882 11 O -0.331 6.331 12 C 0.457 3.543 13 O -0.498 6.498 14 C 0.062 3.938 15 O -0.282 6.282 16 C 0.173 3.827 17 C -0.146 4.146 18 C -0.041 4.041 19 C -0.116 4.116 20 Cl -0.053 7.053 21 C 0.154 3.846 22 F -0.122 7.122 23 C -0.239 4.239 24 C -0.205 4.205 25 C -0.142 4.142 26 H 0.263 0.737 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.052 -10.643 16.107 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.034 3.966 10 C 0.045 3.955 11 O -0.247 6.247 12 C 0.298 3.702 13 O -0.387 6.387 14 C -0.014 4.014 15 O -0.194 6.194 16 C 0.126 3.874 17 C -0.165 4.165 18 C -0.060 4.060 19 C -0.144 4.144 20 Cl -0.025 7.025 21 C 0.134 3.866 22 F -0.100 7.100 23 C -0.259 4.259 24 C -0.242 4.242 25 C -0.180 4.180 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.460 -10.550 16.271 21.157 hybrid contribution 0.784 0.987 -0.100 1.265 sum 9.244 -9.563 16.171 20.938 Atomic orbital electron populations 1.69979 1.05903 1.26940 1.48893 1.25023 0.94887 0.99147 0.94420 0.86638 0.79648 0.82837 0.78801 1.20104 1.21225 1.20079 1.20343 0.92844 0.88306 1.51499 0.91889 1.18774 0.99613 0.93635 0.84543 1.23014 0.82769 0.98695 0.91016 1.86488 1.41124 1.76745 1.20309 1.22590 0.89457 0.75070 0.83123 1.90680 1.25143 1.47446 1.75401 1.22081 0.94690 1.03657 0.80953 1.86163 1.32063 1.81698 1.19451 1.18787 0.86667 0.92607 0.89341 1.20501 1.01392 1.04605 0.90014 1.20764 0.89061 0.96011 1.00159 1.20846 0.91678 1.11605 0.90249 1.98383 1.55562 1.93229 1.55281 1.17024 0.78487 0.99366 0.91721 1.91566 1.31921 1.93406 1.93134 1.21257 0.91682 1.11271 1.01672 1.22986 0.99596 0.95706 1.05892 1.22563 0.91473 1.01723 1.02232 0.92747 0.90433 0.93832 0.87385 0.87151 0.83107 0.83080 0.82741 0.90015 0.91483 0.91631 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 12.86 55.43 0.71 -23.50 16 2 C 0.07 1.82 5.44 -17.82 -0.10 1.73 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.49 -12.93 8.75 -34.44 -0.30 -13.24 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.03 0.83 1.62 -155.66 -0.25 0.58 16 10 C 0.12 2.66 5.29 37.16 0.20 2.85 16 11 O -0.33 -6.68 10.16 -39.25 -0.40 -7.08 16 12 C 0.46 8.07 8.03 36.00 0.29 8.36 16 13 O -0.50 -10.34 16.25 -25.48 -0.41 -10.75 16 14 C 0.06 0.76 5.33 36.00 0.19 0.95 16 15 O -0.28 -3.61 9.67 -39.45 -0.38 -4.00 16 16 C 0.17 1.80 6.69 -39.23 -0.26 1.54 16 17 C -0.15 -1.27 9.98 -39.43 -0.39 -1.66 16 18 C -0.04 -0.32 9.82 -39.58 -0.39 -0.70 16 19 C -0.12 -1.07 6.33 -39.43 -0.25 -1.32 16 20 Cl -0.05 -0.48 28.61 -51.86 -1.48 -1.96 16 21 C 0.15 1.56 7.27 -39.41 -0.29 1.27 16 22 F -0.12 -1.33 16.83 2.25 0.04 -1.29 16 23 C -0.24 -2.30 9.01 -39.37 -0.35 -2.66 16 24 C -0.20 -4.25 9.96 -26.73 -0.27 -4.52 16 25 C -0.14 -3.19 9.39 -26.73 -0.25 -3.44 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.08 1.94 8.13 -51.93 -0.42 1.52 16 28 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 29 H 0.11 1.00 7.65 -51.93 -0.40 0.60 16 30 H 0.11 1.12 7.67 -51.93 -0.40 0.73 16 31 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 1.25 6.30 -52.48 -0.33 0.92 16 34 H 0.08 1.67 8.14 -51.92 -0.42 1.24 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -29.93 350.79 -8.14 -38.07 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.05 Total: -0.03 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.43 Total: -10.25 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.71 Total: -23.50 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.19 Total: -21.83 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.93 -8.14 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.854 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds