Wall clock time and date at job start Tue Mar 31 2020 14:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47010 * 239.99882 * 3 2 1 5 5 H 1.48500 * 109.47315 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47178 * 119.99915 * 3 2 1 7 7 C 1.37875 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99722 * 175.05660 * 7 2 1 9 9 C 1.50697 * 120.00129 * 355.34373 * 7 2 1 10 10 C 1.53008 * 115.54490 * 279.19871 * 9 7 2 11 11 O 1.45203 * 109.46916 * 294.87971 * 10 9 7 12 12 C 1.34226 * 116.99995 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00183 * 180.02562 * 12 11 10 15 15 O 1.42899 * 109.47264 * 180.02562 * 14 12 11 16 16 C 1.35922 * 117.00323 * 180.02562 * 15 14 12 17 17 C 1.38743 * 120.03535 * 179.97438 * 16 15 14 18 18 C 1.38146 * 120.00855 * 180.02562 * 17 16 15 19 19 C 1.38331 * 120.06250 * 359.97438 * 18 17 16 20 20 Cl 1.73608 * 119.96640 * 180.02562 * 19 18 17 21 21 C 1.38565 * 120.06600 * 0.04239 * 19 18 17 22 22 F 1.35101 * 120.00498 * 179.97438 * 21 19 18 23 23 C 1.38366 * 119.99207 * 359.68737 * 21 19 18 24 24 C 1.52997 * 117.50443 * 133.49263 * 9 7 2 25 25 C 1.52998 * 117.50221 * 64.86219 * 9 7 2 26 26 H 0.96995 * 120.00023 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47233 * 54.88091 * 10 9 7 28 28 H 1.09002 * 109.46764 * 174.88318 * 10 9 7 29 29 H 1.09004 * 109.46818 * 300.00054 * 14 12 11 30 30 H 1.08992 * 109.47068 * 60.00017 * 14 12 11 31 31 H 1.08008 * 119.99544 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.96624 * 179.97438 * 18 17 16 33 33 H 1.08004 * 120.03621 * 180.31565 * 23 21 19 34 34 H 1.09007 * 117.49712 * 359.97438 * 24 9 7 35 35 H 1.08995 * 117.50458 * 145.01883 * 24 9 7 36 36 H 1.09004 * 117.49948 * 214.97742 * 25 9 7 37 37 H 1.08998 * 117.49533 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1957 -0.0801 9 6 1.2548 -2.4969 0.1071 10 6 0.8316 -2.9009 1.5208 11 8 2.0131 -3.1553 2.3256 12 6 1.8140 -3.5224 3.6013 13 8 0.6897 -3.6282 4.0311 14 6 2.9927 -3.8027 4.4974 15 8 2.5262 -4.1727 5.7964 16 6 3.4692 -4.4600 6.7322 17 6 3.0862 -4.8259 8.0145 18 6 4.0451 -5.1173 8.9653 19 6 5.3877 -5.0452 8.6402 20 17 6.5907 -5.4125 9.8368 21 6 5.7734 -4.6797 7.3605 22 9 7.0850 -4.6091 7.0444 23 6 4.8150 -4.3927 6.4046 24 6 1.6417 -3.6160 -0.8619 25 6 0.3185 -2.8695 -1.0442 26 1 -0.4850 0.8400 -0.0004 27 1 0.2520 -2.0949 1.9709 28 1 0.2227 -3.8038 1.4737 29 1 3.5825 -4.6178 4.0778 30 1 3.6114 -2.9087 4.5742 31 1 2.0382 -4.8830 8.2695 32 1 3.7462 -5.4017 9.9634 33 1 5.1148 -4.1127 5.4055 34 1 2.4382 -3.4096 -1.5769 35 1 1.5948 -4.6403 -0.4924 36 1 -0.5987 -3.4029 -0.7945 37 1 0.2445 -2.1719 -1.8785 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815964535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:43 Heat of formation + Delta-G solvation = -133.007851 kcal Electronic energy + Delta-G solvation = -24318.511778 eV Core-core repulsion = 20195.464832 eV Total energy + Delta-G solvation = -4123.046946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.11687 -41.82055 -40.99328 -38.92875 -38.42217 -37.33859 -36.96694 -34.03794 -32.05333 -31.55963 -30.01251 -28.30627 -27.19361 -24.34208 -23.72276 -22.98899 -22.04868 -21.21283 -19.97252 -18.68325 -18.55815 -18.06942 -17.91315 -17.66348 -17.07080 -17.01761 -16.93964 -16.65407 -16.35662 -15.66967 -15.27332 -15.02858 -14.72492 -14.34102 -14.21623 -13.90556 -13.76870 -13.54513 -13.12409 -13.01593 -12.92608 -12.81727 -12.78952 -12.42682 -12.08040 -11.98769 -11.79786 -11.74326 -11.70328 -11.34955 -10.90438 -10.46616 -10.16942 -10.09072 -9.37772 -8.14347 -6.25883 -0.14289 -0.07475 0.93268 1.04120 1.08784 1.43089 1.44085 1.51259 2.28562 2.37042 2.42452 2.89530 3.14706 3.30684 3.48328 3.63900 3.72613 3.88945 3.94526 3.98829 4.12115 4.33119 4.36445 4.45705 4.56298 4.64151 4.78385 4.81030 4.85808 4.97914 4.98028 5.19223 5.33502 5.40521 5.55697 5.64122 5.74779 5.98065 6.34261 6.68466 6.79594 7.43066 8.93935 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.002376 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.001088 B =11784.038646 C =12341.848685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.003 3.997 10 C 0.130 3.870 11 O -0.337 6.337 12 C 0.453 3.547 13 O -0.535 6.535 14 C 0.071 3.929 15 O -0.304 6.304 16 C 0.157 3.843 17 C -0.144 4.144 18 C -0.032 4.032 19 C -0.120 4.120 20 Cl -0.052 7.052 21 C 0.138 3.862 22 F -0.130 7.130 23 C -0.236 4.236 24 C -0.175 4.175 25 C -0.147 4.147 26 H 0.261 0.739 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 -11.449 17.080 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.056 3.944 11 O -0.253 6.253 12 C 0.297 3.703 13 O -0.425 6.425 14 C -0.004 4.004 15 O -0.217 6.217 16 C 0.111 3.889 17 C -0.163 4.163 18 C -0.050 4.050 19 C -0.148 4.148 20 Cl -0.024 7.024 21 C 0.118 3.882 22 F -0.109 7.109 23 C -0.256 4.256 24 C -0.212 4.212 25 C -0.185 4.185 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.152 0.848 31 H 0.181 0.819 32 H 0.197 0.803 33 H 0.186 0.814 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.882 -11.369 17.250 22.902 hybrid contribution 0.371 1.175 -0.315 1.272 sum 10.253 -10.194 16.935 22.268 Atomic orbital electron populations 1.70090 1.07123 1.27374 1.50126 1.25720 0.95596 1.02144 0.94340 0.85733 0.78498 0.79175 0.79021 1.19385 1.21296 1.19578 1.20633 0.92863 0.89743 1.50972 0.92347 1.18872 1.01013 0.94281 0.85625 1.22585 0.83341 0.97823 0.90643 1.86476 1.39921 1.77204 1.21711 1.23644 0.90778 0.73413 0.82486 1.90661 1.27152 1.48992 1.75683 1.22179 0.91905 1.06073 0.80270 1.86116 1.33321 1.82435 1.19807 1.18940 0.86599 0.93890 0.89437 1.20753 1.02323 1.03704 0.89537 1.21040 0.88085 0.94759 1.01110 1.21051 0.92359 1.11296 0.90077 1.98385 1.55671 1.93185 1.55111 1.17190 0.78294 1.00421 0.92334 1.91544 1.32455 1.93609 1.93252 1.21347 0.91236 1.10706 1.02265 1.23001 0.98251 0.96069 1.03910 1.22493 0.92860 1.02018 1.01136 0.93019 0.94003 0.92755 0.83874 0.84804 0.81917 0.80319 0.81379 0.89609 0.88800 0.90442 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.96 12.86 21.45 0.28 -50.69 16 2 C 0.02 1.20 5.44 84.65 0.46 1.66 16 3 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.50 -26.57 8.75 25.60 0.22 -26.34 16 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 9 C 0.00 0.12 1.62 -52.93 -0.09 0.03 16 10 C 0.13 5.88 5.29 71.98 0.38 6.27 16 11 O -0.34 -13.43 10.16 -51.38 -0.52 -13.95 16 12 C 0.45 15.71 8.03 71.23 0.57 16.28 16 13 O -0.53 -22.32 16.25 28.38 0.46 -21.86 16 14 C 0.07 1.58 5.33 71.23 0.38 1.96 16 15 O -0.30 -7.30 9.67 -73.59 -0.71 -8.01 16 16 C 0.16 2.97 6.69 22.49 0.15 3.12 16 17 C -0.14 -2.20 9.98 22.37 0.22 -1.97 16 18 C -0.03 -0.40 9.82 22.27 0.22 -0.19 16 19 C -0.12 -1.98 6.33 22.37 0.14 -1.84 16 20 Cl -0.05 -0.85 28.61 -2.72 -0.08 -0.93 16 21 C 0.14 2.55 7.27 22.38 0.16 2.71 16 22 F -0.13 -2.67 16.83 44.97 0.76 -1.92 16 23 C -0.24 -4.05 9.01 22.40 0.20 -3.85 16 24 C -0.18 -6.99 9.96 30.60 0.30 -6.69 16 25 C -0.15 -6.57 9.39 30.60 0.29 -6.29 16 26 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.04 2.16 8.13 -2.39 -0.02 2.14 16 28 H 0.05 2.29 8.09 -2.39 -0.02 2.27 16 29 H 0.14 2.20 7.65 -2.38 -0.02 2.18 16 30 H 0.13 2.38 7.67 -2.39 -0.02 2.36 16 31 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.17 2.27 6.30 -2.91 -0.02 2.25 16 34 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 35 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -65.20 350.79 6.94 -58.26 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.11 Total: 10.00 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.62 Total: -15.13 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.28 Total: -50.69 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.77 Total: -43.82 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.76 Total: -1.92 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -65.20 6.94 -58.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815964535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.748 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds