Wall clock time and date at job start Tue Mar 31 2020 15:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81395 * 107.17027 * 2 1 4 4 O 1.42107 * 113.53822 * 233.80198 * 2 1 3 5 5 N 1.49359 * 107.52176 * 115.34322 * 2 1 3 6 6 C 1.32449 * 120.00208 * 64.89283 * 5 2 1 7 7 C 1.41901 * 120.23125 * 359.72500 * 6 5 2 8 8 C 1.36016 * 119.74277 * 179.75814 * 7 6 5 9 9 C 1.39889 * 120.24694 * 0.50123 * 8 7 6 10 10 N 1.38795 * 119.75983 * 179.73639 * 9 8 7 11 11 C 1.34777 * 119.99995 * 213.82470 * 10 9 8 12 12 O 1.21274 * 119.99883 * 5.28392 * 11 10 9 13 13 C 1.50697 * 120.00203 * 185.27651 * 11 10 9 14 14 S 1.81000 * 109.47434 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00240 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99623 * 0.02562 * 15 14 13 17 17 C 1.38800 * 119.99881 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99745 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47251 * 89.99697 * 19 17 15 21 21 H 1.48498 * 109.47102 * 209.99848 * 19 17 15 22 22 H 1.48501 * 109.47041 * 329.99555 * 19 17 15 23 23 C 1.39890 * 120.48109 * 359.74724 * 9 8 7 24 24 C 1.36015 * 120.24367 * 0.02562 * 23 9 8 25 25 H 1.08998 * 109.46920 * 66.19616 * 1 2 3 26 26 H 1.08990 * 109.47093 * 186.19596 * 1 2 3 27 27 H 1.08999 * 109.46504 * 306.20125 * 1 2 3 28 28 H 1.08998 * 109.47075 * 55.34238 * 3 2 1 29 29 H 1.08996 * 109.47372 * 175.33990 * 3 2 1 30 30 H 1.08999 * 109.47463 * 295.34014 * 3 2 1 31 31 H 1.07994 * 120.12880 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.87369 * 180.20484 * 8 7 6 33 33 H 0.97004 * 120.00094 * 33.82311 * 10 9 8 34 34 H 1.08995 * 109.47711 * 300.00351 * 13 11 10 35 35 H 1.09005 * 109.46949 * 60.00236 * 13 11 10 36 36 H 0.97006 * 120.00143 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.87725 * 179.97438 * 23 9 8 38 38 H 1.07997 * 120.12548 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3816 -0.7694 -1.0514 5 7 2.2637 -0.6097 1.2872 6 6 1.9990 -1.8814 1.5458 7 6 1.2834 -2.6677 0.6060 8 6 1.0213 -3.9740 0.8796 9 6 1.4452 -4.5399 2.0867 10 7 1.1674 -5.8725 2.3578 11 6 0.9211 -6.2655 3.6233 12 8 0.8472 -5.4420 4.5105 13 6 0.7373 -7.7282 3.9357 14 16 0.4230 -7.9321 5.7065 15 6 0.2526 -9.6840 5.7874 16 1 0.3498 -10.2779 4.8906 17 6 -0.0054 -10.3008 7.0038 18 7 -0.1332 -11.6094 7.0641 19 14 -0.1728 -9.2735 8.5550 20 1 -1.5927 -8.8786 8.7363 21 1 0.2731 -10.0697 9.7265 22 1 0.6683 -8.0555 8.4352 23 6 2.1467 -3.7725 3.0225 24 6 2.4236 -2.4655 2.7672 25 1 -0.3633 0.4148 -0.9402 26 1 -0.3633 -1.0216 0.1109 27 1 -0.3632 0.6070 0.8293 28 1 1.8984 2.2528 0.8453 29 1 3.4354 1.7779 0.0835 30 1 2.0366 2.2101 -0.9288 31 1 0.9513 -2.2315 -0.3244 32 1 0.4797 -4.5752 0.1644 33 1 1.1506 -6.5209 1.6366 34 1 -0.1091 -8.1172 3.3698 35 1 1.6397 -8.2746 3.6613 36 1 -0.3131 -12.0405 7.9142 37 1 2.4690 -4.2192 3.9515 38 1 2.9649 -1.8747 3.4912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820378032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:13 Heat of formation + Delta-G solvation = 19.162602 kcal Electronic energy + Delta-G solvation = -22243.402693 eV Core-core repulsion = 18727.503986 eV Total energy + Delta-G solvation = -3515.898707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.23862 -38.70549 -36.89397 -35.65199 -33.42592 -32.41862 -31.18942 -30.65579 -29.83459 -29.55701 -26.92200 -25.57983 -23.14598 -22.17932 -20.41565 -19.03090 -18.02501 -17.64008 -17.32833 -16.71988 -16.38139 -16.07542 -15.15272 -14.96608 -14.82718 -14.31126 -14.23208 -14.10135 -13.92701 -13.69080 -13.62118 -13.42225 -13.21745 -12.98625 -12.81973 -12.77331 -12.19699 -12.12278 -11.74867 -11.28843 -11.24803 -11.06446 -10.98117 -10.59557 -9.84817 -9.79650 -9.56946 -9.35079 -8.98256 -8.88596 -8.48671 -7.02513 -6.88797 -6.26865 -3.98634 -1.11213 1.40677 1.61894 2.02331 2.65227 2.78883 2.97081 3.34198 3.34651 3.38310 3.52850 3.70376 3.92620 3.98293 4.14756 4.30402 4.35207 4.40112 4.73856 4.77358 4.81010 4.89889 5.12182 5.22825 5.25480 5.39337 5.63974 5.75111 5.78054 6.02123 6.05313 6.18422 6.38953 6.56352 6.76081 7.02001 7.39339 7.63689 7.96150 8.43914 8.48389 9.19211 10.82303 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.040451 B = 0.002160 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.024415 B =12957.753945 C =13288.037203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.262 3.738 3 C -0.530 4.530 4 O -0.932 6.932 5 N -1.062 6.062 6 C 0.209 3.791 7 C -0.241 4.241 8 C -0.095 4.095 9 C 0.100 3.900 10 N -0.672 5.672 11 C 0.528 3.472 12 O -0.501 6.501 13 C -0.124 4.124 14 S -0.139 6.139 15 C -0.521 4.521 16 H 0.089 0.911 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.079 4.079 24 C -0.119 4.119 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.407 0.593 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.271 0.729 37 H 0.138 0.862 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 28.916 -18.842 34.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.458 3.542 3 C -0.689 4.689 4 O -0.917 6.917 5 N -0.945 5.945 6 C 0.100 3.900 7 C -0.266 4.266 8 C -0.117 4.117 9 C 0.003 3.997 10 N -0.318 5.318 11 C 0.315 3.685 12 O -0.374 6.374 13 C -0.275 4.275 14 S 0.087 5.913 15 C -0.669 4.669 16 H 0.107 0.893 17 C -0.114 4.114 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.100 4.100 24 C -0.144 4.144 25 H 0.136 0.864 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.243 0.757 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.155 0.845 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.171 30.043 -17.509 34.917 hybrid contribution -0.894 -1.199 -0.992 1.795 sum 2.277 28.844 -18.501 34.344 Atomic orbital electron populations 1.30486 1.27619 1.12693 1.10562 1.14783 0.80751 0.81651 0.77051 1.28818 1.13832 1.14007 1.12223 1.93597 1.73674 1.62606 1.61822 1.69824 1.54071 1.24797 1.45788 1.17375 0.94052 0.84915 0.93701 1.21549 1.09000 0.96686 0.99411 1.20179 1.00178 0.94532 0.96777 1.17809 1.00771 0.85025 0.96079 1.43205 1.70858 1.07812 1.09935 1.20423 0.75388 0.90964 0.81753 1.90700 1.47321 1.53956 1.45425 1.23283 1.05837 0.93996 1.04370 1.84786 1.94042 1.10954 1.01529 1.22318 1.56497 0.88986 0.99092 0.89340 1.24717 0.93309 0.94644 0.98687 1.69939 1.46652 1.08290 1.26789 0.86729 0.80412 0.81981 0.82698 1.19231 1.19961 1.15865 1.20866 0.95692 0.94002 0.99441 1.20646 1.04205 0.94617 0.94967 0.86369 0.84514 0.85114 0.83659 0.83535 0.84541 0.86536 0.86093 0.75722 0.88311 0.88104 0.91953 0.84477 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.33 10.22 101.05 1.03 -1.30 16 2 S 2.26 12.56 4.30 -107.50 -0.46 12.10 16 3 C -0.53 -0.01 10.89 101.05 1.10 1.09 16 4 O -0.93 -9.79 16.18 -35.23 -0.57 -10.36 16 5 N -1.06 -10.78 10.16 32.00 0.33 -10.45 16 6 C 0.21 2.81 6.37 -84.80 -0.54 2.27 16 7 C -0.24 -3.08 7.47 -38.98 -0.29 -3.37 16 8 C -0.10 -1.26 9.89 -39.76 -0.39 -1.65 16 9 C 0.10 1.52 6.29 -83.47 -0.53 0.99 16 10 N -0.67 -9.82 5.29 -9.65 -0.05 -9.87 16 11 C 0.53 9.74 7.56 -10.99 -0.08 9.65 16 12 O -0.50 -10.93 13.53 5.56 0.08 -10.86 16 13 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 14 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 15 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 16 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 19 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 23 C -0.08 -1.27 8.56 -39.76 -0.34 -1.61 16 24 C -0.12 -1.74 10.01 -38.98 -0.39 -2.13 16 25 H 0.12 0.10 8.14 -51.92 -0.42 -0.32 16 26 H 0.14 0.78 5.89 -51.93 -0.31 0.48 16 27 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.14 -0.29 8.14 -51.92 -0.42 -0.71 16 29 H 0.15 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.14 -0.39 8.14 -51.92 -0.42 -0.81 16 31 H 0.12 1.24 4.60 -52.49 -0.24 1.00 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.41 4.53 8.81 -40.82 -0.36 4.17 16 34 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.14 2.40 6.42 -52.49 -0.34 2.06 16 38 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -41.41 344.78 -6.04 -47.45 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.63 Total: 1.40 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.01 Total: -10.34 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 1.05 Total: -46.25 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.49 Total: -21.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: 9.01 SS G_CDS: -2.46 Total: 6.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -41.41 -6.04 -47.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820378032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.613 kcal (2) G-P(sol) polarization free energy of solvation -41.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds