Wall clock time and date at job start Tue Mar 31 2020 15:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81395 * 107.17027 * 2 1 4 4 O 1.42107 * 113.53822 * 233.80198 * 2 1 3 5 5 N 1.49359 * 107.52176 * 115.34322 * 2 1 3 6 6 C 1.32449 * 120.00208 * 64.89283 * 5 2 1 7 7 C 1.41901 * 120.23125 * 359.72500 * 6 5 2 8 8 C 1.36016 * 119.74277 * 179.75814 * 7 6 5 9 9 C 1.39889 * 120.24694 * 0.50123 * 8 7 6 10 10 N 1.38795 * 119.75983 * 179.73639 * 9 8 7 11 11 C 1.34777 * 119.99995 * 213.82470 * 10 9 8 12 12 O 1.21274 * 119.99883 * 5.28392 * 11 10 9 13 13 C 1.50697 * 120.00203 * 185.27651 * 11 10 9 14 14 S 1.81000 * 109.47434 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00240 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99623 * 0.02562 * 15 14 13 17 17 C 1.38800 * 119.99881 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99745 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00091 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47251 * 89.99697 * 19 17 15 21 21 H 1.48498 * 109.47102 * 209.99848 * 19 17 15 22 22 H 1.48501 * 109.47041 * 329.99555 * 19 17 15 23 23 C 1.39890 * 120.48109 * 359.74724 * 9 8 7 24 24 C 1.36015 * 120.24367 * 0.02562 * 23 9 8 25 25 H 1.08998 * 109.46920 * 66.19616 * 1 2 3 26 26 H 1.08990 * 109.47093 * 186.19596 * 1 2 3 27 27 H 1.08999 * 109.46504 * 306.20125 * 1 2 3 28 28 H 1.08998 * 109.47075 * 55.34238 * 3 2 1 29 29 H 1.08996 * 109.47372 * 175.33990 * 3 2 1 30 30 H 1.08999 * 109.47463 * 295.34014 * 3 2 1 31 31 H 1.07994 * 120.12880 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.87369 * 180.20484 * 8 7 6 33 33 H 0.97004 * 120.00094 * 33.82311 * 10 9 8 34 34 H 1.08995 * 109.47711 * 300.00351 * 13 11 10 35 35 H 1.09005 * 109.46949 * 60.00236 * 13 11 10 36 36 H 0.97006 * 120.00143 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.87725 * 179.97438 * 23 9 8 38 38 H 1.07997 * 120.12548 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3816 -0.7694 -1.0514 5 7 2.2637 -0.6097 1.2872 6 6 1.9990 -1.8814 1.5458 7 6 1.2834 -2.6677 0.6060 8 6 1.0213 -3.9740 0.8796 9 6 1.4452 -4.5399 2.0867 10 7 1.1674 -5.8725 2.3578 11 6 0.9211 -6.2655 3.6233 12 8 0.8472 -5.4420 4.5105 13 6 0.7373 -7.7282 3.9357 14 16 0.4230 -7.9321 5.7065 15 6 0.2526 -9.6840 5.7874 16 1 0.3498 -10.2779 4.8906 17 6 -0.0054 -10.3008 7.0038 18 7 -0.1332 -11.6094 7.0641 19 14 -0.1728 -9.2735 8.5550 20 1 -1.5927 -8.8786 8.7363 21 1 0.2731 -10.0697 9.7265 22 1 0.6683 -8.0555 8.4352 23 6 2.1467 -3.7725 3.0225 24 6 2.4236 -2.4655 2.7672 25 1 -0.3633 0.4148 -0.9402 26 1 -0.3633 -1.0216 0.1109 27 1 -0.3632 0.6070 0.8293 28 1 1.8984 2.2528 0.8453 29 1 3.4354 1.7779 0.0835 30 1 2.0366 2.2101 -0.9288 31 1 0.9513 -2.2315 -0.3244 32 1 0.4797 -4.5752 0.1644 33 1 1.1506 -6.5209 1.6366 34 1 -0.1091 -8.1172 3.3698 35 1 1.6397 -8.2746 3.6613 36 1 -0.3131 -12.0405 7.9142 37 1 2.4690 -4.2192 3.9515 38 1 2.9649 -1.8747 3.4912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820378032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:12 Heat of formation + Delta-G solvation = -14.122713 kcal Electronic energy + Delta-G solvation = -22244.846053 eV Core-core repulsion = 18727.503986 eV Total energy + Delta-G solvation = -3517.342067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46536 -39.80811 -37.54059 -36.70130 -34.67536 -34.53790 -32.16776 -31.27278 -30.77234 -30.00225 -28.08550 -27.72376 -24.21786 -23.19348 -21.72928 -19.95552 -19.69803 -18.69901 -18.20368 -18.00533 -17.10040 -17.07802 -16.80682 -16.43772 -15.94447 -15.82749 -15.09753 -14.90190 -14.81861 -14.63654 -14.34580 -14.22897 -14.05324 -13.96384 -13.85510 -13.57736 -13.49682 -13.33653 -13.01643 -12.93263 -12.69348 -12.54565 -12.05559 -11.89549 -11.85642 -11.16633 -11.02796 -10.54028 -10.52581 -10.44349 -9.99065 -8.99998 -8.51053 -7.99591 -6.21926 -1.44170 0.38884 0.56580 0.97674 1.31861 1.47158 1.51860 1.55544 1.65659 2.13781 2.23053 2.27441 2.71812 2.78928 2.87032 3.17399 3.77461 3.83777 3.92054 4.02391 4.05982 4.07620 4.18355 4.21809 4.35520 4.44676 4.54076 4.70890 4.83775 4.96004 5.00520 5.15256 5.36695 5.47736 5.63988 5.71384 5.94509 6.12155 6.42698 6.46786 6.93936 7.16595 8.61273 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.040451 B = 0.002160 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.024415 B =12957.753945 C =13288.037203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.250 3.750 3 C -0.496 4.496 4 O -0.993 6.993 5 N -1.107 6.107 6 C 0.229 3.771 7 C -0.262 4.262 8 C -0.081 4.081 9 C 0.058 3.942 10 N -0.648 5.648 11 C 0.531 3.469 12 O -0.542 6.542 13 C -0.109 4.109 14 S -0.172 6.172 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.045 3.955 18 N -0.916 5.916 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.237 1.237 23 C -0.088 4.088 24 C -0.156 4.156 25 H 0.158 0.842 26 H 0.118 0.882 27 H 0.158 0.842 28 H 0.177 0.823 29 H 0.151 0.849 30 H 0.180 0.820 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.424 0.576 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.277 0.723 37 H 0.110 0.890 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 33.094 -21.117 39.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.453 3.547 3 C -0.656 4.656 4 O -0.979 6.979 5 N -0.987 5.987 6 C 0.116 3.884 7 C -0.288 4.288 8 C -0.102 4.102 9 C -0.038 4.038 10 N -0.295 5.295 11 C 0.318 3.682 12 O -0.419 6.419 13 C -0.260 4.260 14 S 0.055 5.945 15 C -0.676 4.676 16 H 0.081 0.919 17 C -0.161 4.161 18 N -0.554 5.554 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.183 1.183 22 H -0.161 1.161 23 C -0.109 4.109 24 C -0.181 4.181 25 H 0.176 0.824 26 H 0.137 0.863 27 H 0.176 0.824 28 H 0.195 0.805 29 H 0.169 0.831 30 H 0.198 0.802 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.200 34.190 -19.825 39.583 hybrid contribution -0.611 -2.065 -0.622 2.241 sum 1.590 32.126 -20.447 38.114 Atomic orbital electron populations 1.30193 1.22093 1.12727 1.14066 1.14260 0.81672 0.84762 0.74049 1.28837 1.14288 1.06474 1.16004 1.93554 1.75074 1.67119 1.62116 1.69488 1.59224 1.23538 1.46445 1.17547 0.91506 0.86582 0.92716 1.21850 1.09524 0.96880 1.00530 1.20457 0.98779 0.94953 0.95964 1.17844 1.03596 0.85084 0.97289 1.42828 1.69368 1.08354 1.08937 1.20146 0.75455 0.89926 0.82685 1.90688 1.49733 1.54592 1.46889 1.23241 1.07391 0.95451 0.99898 1.84715 1.94307 1.08113 1.07379 1.22460 1.56018 0.90795 0.98375 0.91853 1.25568 0.93071 0.95726 1.01701 1.70016 1.47691 1.09719 1.27987 0.85860 0.80531 0.80474 0.79464 1.18639 1.18293 1.16128 1.20755 0.96527 0.94849 0.98819 1.20714 1.06073 0.94404 0.96923 0.82381 0.86314 0.82419 0.80517 0.83056 0.80186 0.84468 0.83444 0.73724 0.86353 0.86529 0.91361 0.87158 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.50 10.22 113.37 1.16 -0.35 16 2 S 2.25 18.40 4.30 -56.49 -0.24 18.15 16 3 C -0.50 2.81 10.89 113.37 1.23 4.04 16 4 O -0.99 -19.51 16.18 -148.98 -2.41 -21.92 16 5 N -1.11 -21.50 10.16 -52.67 -0.54 -22.03 16 6 C 0.23 6.23 6.37 40.86 0.26 6.49 16 7 C -0.26 -6.60 7.47 22.66 0.17 -6.43 16 8 C -0.08 -2.10 9.89 22.15 0.22 -1.88 16 9 C 0.06 1.81 6.29 38.84 0.24 2.05 16 10 N -0.65 -19.13 5.29 -302.83 -1.60 -20.73 16 11 C 0.53 20.02 7.56 87.66 0.66 20.68 16 12 O -0.54 -24.69 13.53 -3.01 -0.04 -24.73 16 13 C -0.11 -4.28 6.16 71.23 0.44 -3.84 16 14 S -0.17 -8.89 18.55 -56.49 -1.05 -9.94 16 15 C -0.53 -31.31 10.04 67.95 0.68 -30.62 16 16 H 0.06 3.94 8.03 -2.91 -0.02 3.92 16 17 C 0.04 2.67 5.50 84.86 0.47 3.14 16 18 N -0.92 -56.49 13.97 21.65 0.30 -56.19 16 19 Si 0.91 45.81 27.74 68.60 1.90 47.71 16 20 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 23 C -0.09 -3.07 8.56 22.15 0.19 -2.88 16 24 C -0.16 -4.92 10.01 22.66 0.23 -4.69 16 25 H 0.16 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.12 0.97 5.89 -2.40 -0.01 0.95 16 27 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.18 -1.91 8.14 -2.39 -0.02 -1.93 16 29 H 0.15 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.18 -2.37 8.14 -2.39 -0.02 -2.39 16 31 H 0.14 2.74 4.60 -2.91 -0.01 2.72 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.42 9.14 8.81 -92.71 -0.82 8.32 16 34 H 0.12 4.19 8.14 -2.40 -0.02 4.17 16 35 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 36 H 0.28 15.78 8.31 -92.70 -0.77 15.01 16 37 H 0.11 4.29 6.42 -2.91 -0.02 4.28 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -97.19 344.78 2.52 -94.67 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.24 Total: 9.31 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 5.95 Total: -14.30 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -1.83 Total: -98.95 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -2.45 Total: -46.66 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Atomic # 16 Polarization: 9.51 SS G_CDS: -1.29 Total: 8.22 kcal Total: -97.19 2.52 -94.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820378032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.543 kcal (2) G-P(sol) polarization free energy of solvation -97.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds