Wall clock time and date at job start Tue Mar 31 2020 15:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47061 * 299.99676 * 3 2 1 6 6 H 1.48495 * 109.47500 * 59.99487 * 3 2 1 7 7 C 1.37883 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97082 * 125.00181 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.76577 * 11 10 9 13 13 C 1.40396 * 107.86896 * 0.22585 * 12 11 10 14 14 N 1.40201 * 125.97176 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00142 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00332 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47240 * 179.97438 * 18 17 15 20 20 S 1.82847 * 110.31219 * 57.20009 * 19 18 17 21 21 C 1.83114 * 99.46725 * 217.17590 * 20 19 18 22 22 C 1.54496 * 105.03375 * 44.18269 * 21 20 19 23 23 S 1.82116 * 106.98794 * 313.67264 * 22 21 20 24 24 N 1.31202 * 108.05652 * 359.97438 * 13 12 11 25 25 H 0.96995 * 120.00331 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46925 * 59.99386 * 9 7 2 27 27 H 1.08997 * 109.46741 * 299.99881 * 9 7 2 28 28 H 1.08002 * 126.07726 * 0.03413 * 11 10 9 29 29 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 30 30 H 0.96998 * 119.99801 * 180.02562 * 14 13 12 31 31 H 0.96998 * 119.99652 * 0.02562 * 17 15 14 32 32 H 1.08998 * 109.47411 * 299.99902 * 18 17 15 33 33 H 1.09009 * 109.47152 * 59.99815 * 18 17 15 34 34 H 1.09009 * 110.27781 * 179.30064 * 19 18 17 35 35 H 1.09002 * 110.26731 * 285.31089 * 21 20 19 36 36 H 1.08992 * 110.44035 * 163.14438 * 21 20 19 37 37 H 1.09001 * 109.96015 * 194.28726 * 22 21 20 38 38 H 1.09002 * 109.98606 * 73.07659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8952 12 6 3.2576 -5.4453 0.5477 13 6 3.8669 -4.9163 -0.6012 14 7 4.9610 -5.4690 -1.2818 15 6 5.5223 -6.6116 -0.8397 16 8 5.0796 -7.1636 0.1492 17 7 6.5744 -7.1427 -1.4936 18 6 7.1842 -8.3851 -1.0134 19 6 8.3496 -8.7679 -1.9278 20 16 9.5734 -7.4112 -1.9981 21 6 10.0600 -7.5355 -3.7590 22 6 8.7329 -7.7119 -4.5301 23 16 7.7664 -8.9755 -3.6436 24 7 3.2336 -3.8143 -0.9266 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 1.5776 -4.7526 1.7366 29 1 3.5478 -6.3494 1.0624 30 1 5.3144 -5.0285 -2.0704 31 1 6.9277 -6.7022 -2.2823 32 1 7.5515 -8.2406 0.0026 33 1 6.4401 -9.1817 -1.0209 34 1 8.8212 -9.6851 -1.5749 35 1 10.7052 -8.4006 -3.9123 36 1 10.5661 -6.6249 -4.0792 37 1 8.9354 -8.0447 -5.5481 38 1 8.1850 -6.7698 -4.5490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821188411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:47 Heat of formation + Delta-G solvation = 66.997731 kcal Electronic energy + Delta-G solvation = -22387.029113 eV Core-core repulsion = 18905.497444 eV Total energy + Delta-G solvation = -3481.531669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66084 -39.52575 -35.82577 -34.57226 -33.75507 -33.31873 -31.36348 -30.25629 -29.21202 -26.59107 -24.46903 -24.14217 -22.92741 -21.64345 -20.39138 -19.80281 -18.07708 -17.67357 -17.28224 -16.62170 -16.53037 -16.16109 -15.63978 -15.46746 -14.88804 -14.48484 -14.35808 -14.21038 -14.15611 -13.74838 -13.60926 -13.15137 -12.73038 -12.46405 -12.33981 -12.19051 -12.08329 -11.71065 -11.42555 -11.02605 -10.85772 -10.38086 -10.26647 -10.23472 -10.04116 -9.64399 -9.44526 -9.23371 -8.61068 -8.50121 -8.40430 -8.04376 -7.35762 -6.21616 -4.26312 0.50913 0.90895 1.12377 2.01341 2.41309 2.72233 3.17154 3.23972 3.31417 3.38128 3.64972 3.73813 3.90253 3.90959 4.16303 4.29630 4.39463 4.54837 4.64227 4.79586 4.95901 5.13527 5.14639 5.27735 5.58667 5.86073 6.19592 6.32199 6.59291 6.62446 6.91825 7.05159 7.14996 7.55345 7.73151 7.86307 8.02171 8.11605 8.63902 8.71616 8.84998 9.39183 10.87117 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002393 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.122096 B =11697.797647 C =12469.396785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.277 3.723 14 N -0.642 5.642 15 C 0.717 3.283 16 O -0.569 6.569 17 N -0.734 5.734 18 C 0.170 3.830 19 C -0.034 4.034 20 S -0.227 6.227 21 C -0.088 4.088 22 C -0.092 4.092 23 S -0.233 6.233 24 N -0.308 5.308 25 H 0.266 0.734 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.406 0.594 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.743 -18.598 -8.079 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.023 3.977 14 N -0.291 5.291 15 C 0.416 3.584 16 O -0.445 6.445 17 N -0.392 5.392 18 C 0.042 3.958 19 C -0.273 4.273 20 S -0.001 6.001 21 C -0.238 4.238 22 C -0.242 4.242 23 S -0.008 6.008 24 N -0.139 5.139 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.184 0.816 29 H 0.178 0.822 30 H 0.241 0.759 31 H 0.235 0.765 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.640 -17.937 -7.554 26.949 hybrid contribution 1.333 0.739 -0.713 1.683 sum 19.974 -17.198 -8.266 27.623 Atomic orbital electron populations 1.69925 1.06037 1.27470 1.50002 1.24950 0.94975 0.99541 0.94685 0.86283 0.80081 0.82519 0.77681 1.19562 1.20729 1.20791 1.21312 0.94048 0.89397 1.51709 0.91242 1.19728 0.85630 0.81340 0.99221 1.49041 1.23206 1.19801 1.18271 1.22549 1.00371 0.90278 0.96767 1.21507 1.02120 1.06321 1.01757 1.18774 0.90690 0.93959 0.94316 1.41314 1.31644 1.24748 1.31432 1.15507 0.79852 0.80200 0.82826 1.90869 1.64400 1.62481 1.26762 1.44926 1.34050 1.27129 1.33120 1.20878 0.91890 0.87116 0.95908 1.26137 0.99379 1.03396 0.98363 1.88139 1.52313 1.44287 1.15356 1.24567 0.99469 1.07884 0.91903 1.24464 0.95802 1.01575 1.02387 1.87569 1.59625 1.50434 1.03159 1.77316 1.03838 1.16235 1.16500 0.92418 0.93775 0.92558 0.81567 0.82191 0.75938 0.76528 0.89384 0.89016 0.84202 0.87824 0.85344 0.85859 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.78 9.23 -34.44 -0.32 -15.10 16 8 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 9 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 10 N -0.32 -7.61 3.67 -62.56 -0.23 -7.84 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.84 9.61 -39.84 -0.38 -6.22 16 13 C 0.28 5.70 8.11 -154.36 -1.25 4.45 16 14 N -0.64 -10.30 5.45 -15.51 -0.08 -10.38 16 15 C 0.72 10.79 8.53 -86.92 -0.74 10.05 16 16 O -0.57 -10.37 13.47 5.28 0.07 -10.30 16 17 N -0.73 -7.76 4.99 -65.23 -0.33 -8.08 16 18 C 0.17 1.50 5.42 -4.05 -0.02 1.48 16 19 C -0.03 -0.22 3.87 37.16 0.14 -0.08 16 20 S -0.23 -1.58 21.39 -104.32 -2.23 -3.81 16 21 C -0.09 -0.34 7.05 37.94 0.27 -0.07 16 22 C -0.09 -0.38 6.85 37.94 0.26 -0.12 16 23 S -0.23 -1.61 21.48 -104.32 -2.24 -3.85 16 24 N -0.31 -7.21 12.42 31.44 0.39 -6.82 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 29 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 30 H 0.41 5.35 8.84 -40.82 -0.36 4.99 16 31 H 0.40 3.53 7.35 -40.82 -0.30 3.23 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -33.79 348.32 -10.80 -44.58 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.74 Total: 6.13 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.37 Total: 3.43 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.49 Total: -57.91 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -4.47 Total: -7.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.79 -10.80 -44.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821188411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.581 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds