Wall clock time and date at job start Tue Mar 31 2020 15:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47061 * 299.99676 * 3 2 1 6 6 H 1.48495 * 109.47500 * 59.99487 * 3 2 1 7 7 C 1.37883 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34962 * 125.97082 * 125.00181 * 10 9 7 12 12 C 1.35243 * 107.85356 * 179.76577 * 11 10 9 13 13 C 1.40396 * 107.86896 * 0.22585 * 12 11 10 14 14 N 1.40201 * 125.97176 * 179.97438 * 13 12 11 15 15 C 1.34768 * 120.00142 * 359.97438 * 14 13 12 16 16 O 1.21596 * 120.00202 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00292 * 180.02562 * 15 14 13 18 18 C 1.46494 * 120.00332 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47240 * 179.97438 * 18 17 15 20 20 S 1.82847 * 110.31219 * 57.20009 * 19 18 17 21 21 C 1.83114 * 99.46725 * 217.17590 * 20 19 18 22 22 C 1.54496 * 105.03375 * 44.18269 * 21 20 19 23 23 S 1.82116 * 106.98794 * 313.67264 * 22 21 20 24 24 N 1.31202 * 108.05652 * 359.97438 * 13 12 11 25 25 H 0.96995 * 120.00331 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46925 * 59.99386 * 9 7 2 27 27 H 1.08997 * 109.46741 * 299.99881 * 9 7 2 28 28 H 1.08002 * 126.07726 * 0.03413 * 11 10 9 29 29 H 1.08003 * 126.06335 * 180.26555 * 12 11 10 30 30 H 0.96998 * 119.99801 * 180.02562 * 14 13 12 31 31 H 0.96998 * 119.99652 * 0.02562 * 17 15 14 32 32 H 1.08998 * 109.47411 * 299.99902 * 18 17 15 33 33 H 1.09009 * 109.47152 * 59.99815 * 18 17 15 34 34 H 1.09009 * 110.27781 * 179.30064 * 19 18 17 35 35 H 1.09002 * 110.26731 * 285.31089 * 21 20 19 36 36 H 1.08992 * 110.44035 * 163.14438 * 21 20 19 37 37 H 1.09001 * 109.96015 * 194.28726 * 22 21 20 38 38 H 1.09002 * 109.98606 * 73.07659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8952 12 6 3.2576 -5.4453 0.5477 13 6 3.8669 -4.9163 -0.6012 14 7 4.9610 -5.4690 -1.2818 15 6 5.5223 -6.6116 -0.8397 16 8 5.0796 -7.1636 0.1492 17 7 6.5744 -7.1427 -1.4936 18 6 7.1842 -8.3851 -1.0134 19 6 8.3496 -8.7679 -1.9278 20 16 9.5734 -7.4112 -1.9981 21 6 10.0600 -7.5355 -3.7590 22 6 8.7329 -7.7119 -4.5301 23 16 7.7664 -8.9755 -3.6436 24 7 3.2336 -3.8143 -0.9266 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 1.5776 -4.7526 1.7366 29 1 3.5478 -6.3494 1.0624 30 1 5.3144 -5.0285 -2.0704 31 1 6.9277 -6.7022 -2.2823 32 1 7.5515 -8.2406 0.0026 33 1 6.4401 -9.1817 -1.0209 34 1 8.8212 -9.6851 -1.5749 35 1 10.7052 -8.4006 -3.9123 36 1 10.5661 -6.6249 -4.0792 37 1 8.9354 -8.0447 -5.5481 38 1 8.1850 -6.7698 -4.5490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821188411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:46 Heat of formation + Delta-G solvation = 45.360585 kcal Electronic energy + Delta-G solvation = -22387.967370 eV Core-core repulsion = 18905.497444 eV Total energy + Delta-G solvation = -3482.469926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19940 -40.87996 -36.85376 -36.03362 -35.25511 -34.10691 -32.91960 -31.42320 -30.85397 -28.48880 -25.40244 -24.72994 -24.46744 -22.92853 -21.95842 -21.28329 -19.31347 -18.69726 -18.43121 -17.95160 -17.87638 -17.04743 -16.80187 -16.43895 -16.37622 -15.88138 -15.61408 -15.40652 -14.83882 -14.71021 -14.53869 -14.34260 -14.19501 -13.77970 -13.64644 -13.52424 -13.01437 -12.92794 -12.72651 -12.64565 -12.29273 -12.03536 -11.84105 -11.62134 -11.37118 -11.12466 -10.76443 -10.71099 -10.23314 -9.70102 -9.06511 -9.01587 -8.93358 -8.31533 -6.45584 0.04777 0.38913 0.72206 1.09369 1.15045 1.38140 1.39395 1.52789 1.59500 1.72633 2.12673 2.37212 2.43265 2.99873 3.14758 3.25267 3.43791 3.90917 3.99188 4.03369 4.30077 4.39205 4.39778 4.52748 4.54136 4.67631 4.79632 4.92036 4.97335 5.03838 5.12442 5.38754 5.58524 5.75931 5.87923 5.99296 6.31648 6.65190 6.74944 7.15671 7.24367 7.42089 8.76136 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002393 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.122096 B =11697.797647 C =12469.396785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.635 5.635 15 C 0.716 3.284 16 O -0.600 6.600 17 N -0.712 5.712 18 C 0.167 3.833 19 C -0.016 4.016 20 S -0.272 6.272 21 C -0.072 4.072 22 C -0.082 4.082 23 S -0.272 6.272 24 N -0.347 5.347 25 H 0.272 0.728 26 H 0.021 0.979 27 H 0.059 0.941 28 H 0.201 0.799 29 H 0.167 0.833 30 H 0.419 0.581 31 H 0.409 0.591 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.517 -18.743 -8.815 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.415 3.585 16 O -0.479 6.479 17 N -0.370 5.370 18 C 0.040 3.960 19 C -0.255 4.255 20 S -0.046 6.046 21 C -0.221 4.221 22 C -0.232 4.232 23 S -0.046 6.046 24 N -0.178 5.178 25 H 0.081 0.919 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.218 0.782 29 H 0.184 0.816 30 H 0.256 0.744 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.134 0.866 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 20.460 -18.113 -8.327 28.566 hybrid contribution 0.875 0.665 -0.545 1.226 sum 21.335 -17.448 -8.872 28.954 Atomic orbital electron populations 1.69999 1.07211 1.28687 1.50117 1.25745 0.95844 1.02732 0.93935 0.85293 0.78403 0.78373 0.78294 1.19912 1.19799 1.19549 1.21435 0.93377 0.90982 1.52592 0.92977 1.19334 0.85675 0.81524 0.98093 1.48817 1.23835 1.20403 1.19712 1.23153 1.00491 0.88878 0.96723 1.21680 1.02225 1.06521 1.01894 1.19071 0.90874 0.92951 0.94164 1.41319 1.30641 1.25086 1.31643 1.15649 0.80423 0.79725 0.82688 1.90839 1.65548 1.63213 1.28266 1.44820 1.32322 1.27230 1.32646 1.20985 0.92621 0.85975 0.96401 1.25991 0.98118 1.03697 0.97665 1.88301 1.52725 1.44707 1.18889 1.24647 0.99402 1.09348 0.88748 1.24552 0.95323 1.00565 1.02789 1.87724 1.60980 1.52019 1.03917 1.77237 1.04922 1.17978 1.17672 0.91854 0.96066 0.92358 0.78222 0.81572 0.74399 0.75295 0.89800 0.89298 0.82681 0.86604 0.83509 0.83783 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 13.29 21.45 0.28 -52.27 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.13 9.23 25.60 0.24 -30.90 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.34 6.26 85.63 0.54 14.88 16 10 N -0.35 -16.58 3.67 -351.84 -1.29 -17.87 16 11 C 0.06 2.27 11.44 83.52 0.96 3.23 16 12 C -0.29 -11.83 9.61 22.10 0.21 -11.61 16 13 C 0.29 11.74 8.11 133.31 1.08 12.82 16 14 N -0.64 -20.07 5.45 -321.24 -1.75 -21.82 16 15 C 0.72 21.10 8.53 179.06 1.53 22.62 16 16 O -0.60 -21.64 13.47 -4.02 -0.05 -21.70 16 17 N -0.71 -14.36 4.99 -478.54 -2.39 -16.75 16 18 C 0.17 2.81 5.42 86.38 0.47 3.28 16 19 C -0.02 -0.19 3.87 71.98 0.28 0.09 16 20 S -0.27 -3.35 21.39 -49.98 -1.07 -4.42 16 21 C -0.07 -0.35 7.05 72.49 0.51 0.16 16 22 C -0.08 -0.46 6.85 72.49 0.50 0.03 16 23 S -0.27 -3.31 21.48 -49.98 -1.07 -4.38 16 24 N -0.35 -16.47 12.42 -54.44 -0.68 -17.15 16 25 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 2.99 8.07 -2.39 -0.02 2.98 16 28 H 0.20 6.42 8.06 -2.91 -0.02 6.40 16 29 H 0.17 6.57 5.91 -2.91 -0.02 6.56 16 30 H 0.42 10.75 8.84 -92.71 -0.82 9.93 16 31 H 0.41 6.69 7.35 -92.71 -0.68 6.01 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.16 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -72.97 348.32 0.38 -72.59 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.39 Total: 21.80 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 6.76 Total: 16.04 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -5.82 Total: -125.87 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.14 Total: -8.80 kcal Total: -72.97 0.38 -72.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821188411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.952 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds