Wall clock time and date at job start Tue Mar 31 2020 14:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.54717 * 2 1 4 4 O 1.45197 * 109.47158 * 325.58128 * 3 2 1 5 5 C 1.34756 * 116.99947 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99952 * 359.97438 * 5 4 3 7 7 C 1.47395 * 120.00263 * 180.02562 * 5 4 3 8 8 C 1.39737 * 120.20257 * 359.97438 * 7 5 4 9 9 C 1.37804 * 119.91453 * 179.70312 * 8 7 5 10 10 C 1.38586 * 120.32973 * 0.28447 * 9 8 7 11 11 C 1.38023 * 120.41681 * 0.02562 * 10 9 8 12 12 C 1.38827 * 120.07847 * 359.97438 * 11 10 9 13 13 O 1.35502 * 120.16737 * 179.97438 * 12 11 10 14 14 C 1.34813 * 116.99882 * 354.40400 * 13 12 11 15 15 H 1.07998 * 119.99842 * 5.05969 * 14 13 12 16 16 C 1.38704 * 119.99776 * 185.06699 * 14 13 12 17 17 N 1.31512 * 120.00288 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99981 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46841 * 59.99774 * 18 16 14 20 20 H 1.48491 * 109.47126 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46980 * 300.00295 * 18 16 14 22 22 C 1.52998 * 117.49907 * 145.66764 * 2 1 3 23 23 C 1.52996 * 117.49778 * 214.32686 * 2 1 3 24 24 F 1.39906 * 117.49516 * 144.99701 * 23 2 1 25 25 Cl 1.80295 * 117.50184 * 359.97438 * 23 2 1 26 26 H 1.08996 * 109.47247 * 34.42101 * 1 2 3 27 27 H 1.09004 * 109.46986 * 154.41686 * 1 2 3 28 28 H 1.09004 * 109.46995 * 274.41463 * 1 2 3 29 29 H 1.08997 * 109.46703 * 205.58207 * 3 2 1 30 30 H 1.08998 * 109.46825 * 85.58030 * 3 2 1 31 31 H 1.08001 * 120.03767 * 359.97438 * 8 7 5 32 32 H 1.07996 * 119.83293 * 180.25577 * 9 8 7 33 33 H 1.08007 * 119.79109 * 180.02562 * 10 9 8 34 34 H 1.08001 * 119.95707 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00316 * 180.02562 * 17 16 14 36 36 H 1.08996 * 117.49762 * 215.00336 * 22 2 1 37 37 H 1.08999 * 117.50010 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3798 2.3041 -0.7738 5 6 1.8248 3.5721 -0.8740 6 8 2.8612 3.8971 -0.3293 7 6 1.0538 4.5651 -1.6434 8 6 -0.1389 4.1962 -2.2711 9 6 -0.8582 5.1309 -2.9838 10 6 -0.4017 6.4354 -3.0867 11 6 0.7778 6.8131 -2.4776 12 6 1.5161 5.8854 -1.7553 13 8 2.6746 6.2541 -1.1570 14 6 3.1158 7.5053 -1.3963 15 1 2.5115 8.1899 -1.9730 16 6 4.3459 7.9133 -0.9021 17 7 5.0816 7.0797 -0.1996 18 14 4.9577 9.6468 -1.2343 19 1 3.9990 10.6276 -0.6649 20 1 6.2885 9.8317 -0.6021 21 1 5.0713 9.8592 -2.6996 22 6 2.2365 -1.1207 0.7654 23 6 2.2365 -1.1208 -0.7653 24 9 3.4364 -0.8049 -1.4116 25 17 1.2023 -2.3408 -1.5975 26 1 -0.3633 0.8477 -0.5809 27 1 -0.3633 -0.9269 -0.4438 28 1 -0.3633 0.0791 1.0247 29 1 3.1828 1.3084 -0.4437 30 1 2.2751 1.7423 1.0246 31 1 -0.4988 3.1808 -2.1940 32 1 -1.7819 4.8454 -3.4649 33 1 -0.9726 7.1610 -3.6472 34 1 1.1269 7.8316 -2.5630 35 1 5.9417 7.3651 0.1463 36 1 3.1713 -0.8746 1.2689 37 1 1.6113 -1.8582 1.2686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821865498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:41 Heat of formation + Delta-G solvation = -124.871355 kcal Electronic energy + Delta-G solvation = -25253.868956 eV Core-core repulsion = 21131.174835 eV Total energy + Delta-G solvation = -4122.694122 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14554 -41.61948 -40.49515 -39.08491 -38.13057 -37.32559 -36.65969 -34.37924 -32.38775 -30.65086 -29.82096 -28.45049 -27.40531 -24.98919 -23.56655 -23.30286 -21.89649 -20.72419 -19.91746 -19.29996 -18.48202 -18.17295 -17.77177 -17.21924 -16.78801 -16.36543 -16.33978 -16.15268 -15.61056 -15.47777 -15.27557 -14.70892 -14.52368 -14.32632 -14.25890 -14.00667 -13.74553 -13.57558 -13.37244 -13.02598 -12.73692 -12.70685 -12.57514 -12.53187 -12.36880 -12.16136 -11.98383 -11.85245 -11.63084 -11.45736 -11.07607 -10.85191 -10.75797 -9.93145 -9.12443 -8.48990 -6.20293 -0.05730 0.36034 0.68908 1.33044 1.45779 1.50720 1.51825 1.71673 2.03163 2.14013 2.63577 2.81590 3.14037 3.16240 3.29156 3.37220 3.63725 3.95720 4.03993 4.09047 4.17734 4.25290 4.40587 4.50998 4.52483 4.62087 4.69769 4.88052 4.91819 4.92857 5.04416 5.11862 5.26088 5.39029 5.46761 5.59794 5.66281 5.92263 6.12038 6.89045 6.94800 7.70541 8.70888 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.003234 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.564739 B = 8657.034746 C = 9909.589263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C 0.093 3.907 4 O -0.343 6.343 5 C 0.500 3.500 6 O -0.530 6.530 7 C -0.237 4.237 8 C -0.011 4.011 9 C -0.204 4.204 10 C -0.027 4.027 11 C -0.257 4.257 12 C 0.157 3.843 13 O -0.187 6.187 14 C -0.429 4.429 15 H 0.112 0.888 16 C -0.019 4.019 17 N -0.903 5.903 18 Si 1.023 2.977 19 H -0.252 1.252 20 H -0.274 1.274 21 H -0.254 1.254 22 C -0.115 4.115 23 C 0.079 3.921 24 F -0.166 7.166 25 Cl -0.098 7.098 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.273 0.727 36 H 0.132 0.868 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 -14.141 -1.179 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.110 4.110 3 C 0.019 3.981 4 O -0.261 6.261 5 C 0.347 3.653 6 O -0.421 6.421 7 C -0.240 4.240 8 C -0.029 4.029 9 C -0.222 4.222 10 C -0.045 4.045 11 C -0.276 4.276 12 C 0.102 3.898 13 O -0.090 6.090 14 C -0.505 4.505 15 H 0.129 0.871 16 C -0.219 4.219 17 N -0.538 5.538 18 Si 0.841 3.159 19 H -0.176 1.176 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.152 4.152 23 C 0.036 3.964 24 F -0.146 7.146 25 Cl -0.071 7.071 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.287 -14.303 -0.815 18.874 hybrid contribution 1.384 0.707 -0.101 1.558 sum -10.903 -13.596 -0.917 17.452 Atomic orbital electron populations 1.21497 0.87422 1.04315 1.04547 1.22578 0.99171 0.88130 1.01124 1.22419 0.93077 0.86374 0.96254 1.86449 1.51715 1.19731 1.68168 1.21416 0.83605 0.81561 0.78687 1.90997 1.25158 1.80095 1.45802 1.18458 1.02210 0.89791 1.13555 1.21393 0.89663 1.00811 0.91042 1.21223 1.03058 0.92881 1.05031 1.21539 0.92444 0.97214 0.93258 1.21294 0.99484 1.00169 1.06612 1.19977 0.86949 0.92740 0.90121 1.84142 1.32749 1.32555 1.59515 1.22061 1.04275 0.87213 1.36938 0.87104 1.26780 0.94812 1.05079 0.95219 1.70288 1.12223 1.38019 1.33306 0.84610 0.77867 0.73889 0.79557 1.17593 1.19863 1.17800 1.24578 1.04568 0.97968 0.88116 1.24310 0.82865 0.97717 0.91526 1.92909 1.45702 1.92572 1.83428 1.98749 1.68106 1.58146 1.82136 0.91047 0.89679 0.88979 0.92479 0.89640 0.82550 0.81651 0.82182 0.85127 0.91842 0.84954 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.64 71.98 0.69 -1.40 16 2 C -0.11 -2.33 2.59 -52.18 -0.13 -2.47 16 3 C 0.09 2.89 5.57 71.98 0.40 3.29 16 4 O -0.34 -12.45 8.04 -56.67 -0.46 -12.90 16 5 C 0.50 23.46 7.89 70.23 0.55 24.01 16 6 O -0.53 -30.66 14.96 26.79 0.40 -30.26 16 7 C -0.24 -10.58 5.89 -19.99 -0.12 -10.69 16 8 C -0.01 -0.36 9.61 22.53 0.22 -0.14 16 9 C -0.20 -5.50 10.02 22.25 0.22 -5.28 16 10 C -0.03 -0.80 10.03 22.30 0.22 -0.57 16 11 C -0.26 -10.58 9.16 22.36 0.20 -10.38 16 12 C 0.16 7.99 6.66 22.92 0.15 8.14 16 13 O -0.19 -11.66 7.84 1.05 0.01 -11.66 16 14 C -0.43 -25.28 9.49 67.93 0.64 -24.63 16 15 H 0.11 5.77 5.21 -2.91 -0.02 5.76 16 16 C -0.02 -1.10 5.49 84.85 0.47 -0.64 16 17 N -0.90 -57.68 13.67 21.62 0.30 -57.38 16 18 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 22 C -0.12 -1.71 9.80 30.62 0.30 -1.41 16 23 C 0.08 1.74 4.33 30.62 0.13 1.88 16 24 F -0.17 -4.78 16.50 44.97 0.74 -4.04 16 25 Cl -0.10 -1.90 27.40 -2.72 -0.07 -1.98 16 26 H 0.07 1.44 6.87 -2.39 -0.02 1.43 16 27 H 0.08 1.25 6.12 -2.39 -0.01 1.24 16 28 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.06 2.02 7.10 -2.39 -0.02 2.00 16 30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.16 4.04 7.61 -2.91 -0.02 4.02 16 32 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.13 5.36 5.64 -2.91 -0.02 5.35 16 35 H 0.27 15.96 8.31 -92.71 -0.77 15.18 16 36 H 0.13 1.79 8.14 -2.39 -0.02 1.78 16 37 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -82.15 340.98 8.03 -74.12 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.12 Total: 19.42 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.96 Total: -20.29 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.30 Total: -57.38 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -0.05 Total: -54.81 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.74 Total: -4.04 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.98 kcal Total: -82.15 8.03 -74.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821865498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.751 kcal (2) G-P(sol) polarization free energy of solvation -82.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds