Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 115.54868 * 2 1 4 4 O 1.45200 * 109.47236 * 34.41631 * 3 2 1 5 5 C 1.34760 * 116.99887 * 179.97438 * 4 3 2 6 6 O 1.21506 * 120.00106 * 0.02562 * 5 4 3 7 7 C 1.47400 * 119.99765 * 180.02562 * 5 4 3 8 8 C 1.39732 * 120.20500 * 0.02562 * 7 5 4 9 9 C 1.37796 * 119.91349 * 180.02562 * 8 7 5 10 10 C 1.38586 * 120.33498 * 0.02562 * 9 8 7 11 11 C 1.38026 * 120.41462 * 0.02562 * 10 9 8 12 12 C 1.38837 * 120.07425 * 359.97438 * 11 10 9 13 13 O 1.35501 * 120.16286 * 179.97438 * 12 11 10 14 14 C 1.34810 * 117.00239 * 354.40382 * 13 12 11 15 15 H 1.07998 * 120.00110 * 5.05580 * 14 13 12 16 16 C 1.38706 * 119.99988 * 185.06739 * 14 13 12 17 17 N 1.31513 * 120.00130 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47457 * 59.99776 * 18 16 14 20 20 H 1.48500 * 109.46998 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46954 * 299.99521 * 18 16 14 22 22 C 1.52991 * 117.49727 * 145.66956 * 2 1 3 23 23 C 1.52997 * 117.49923 * 214.33241 * 2 1 3 24 24 F 1.39901 * 117.49997 * 359.97438 * 23 2 1 25 25 Cl 1.80300 * 117.50004 * 144.99807 * 23 2 1 26 26 H 1.08998 * 109.47191 * 85.57878 * 1 2 3 27 27 H 1.08991 * 109.47455 * 205.58348 * 1 2 3 28 28 H 1.08999 * 109.47389 * 325.58703 * 1 2 3 29 29 H 1.09005 * 109.47317 * 274.41463 * 3 2 1 30 30 H 1.09000 * 109.47190 * 154.41566 * 3 2 1 31 31 H 1.07997 * 120.03853 * 0.02562 * 8 7 5 32 32 H 1.08003 * 119.83389 * 179.71968 * 9 8 7 33 33 H 1.07998 * 119.79680 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.96416 * 179.97438 * 11 10 9 35 35 H 0.97005 * 120.00189 * 180.02562 * 17 16 14 36 36 H 1.09005 * 117.50074 * 215.00410 * 22 2 1 37 37 H 1.08996 * 117.50331 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3797 2.3042 0.7737 5 6 1.8248 3.5722 0.8739 6 8 2.8612 3.8971 0.3293 7 6 1.0543 4.5650 1.6443 8 6 -0.1378 4.1958 2.2728 9 6 -0.8536 5.1289 2.9910 10 6 -0.3976 6.4335 3.0933 11 6 0.7776 6.8134 2.4771 12 6 1.5124 5.8872 1.7492 13 8 2.6661 6.2582 1.1431 14 6 2.9872 7.5668 1.1869 15 1 2.3795 8.2531 1.7580 16 6 4.0978 8.0319 0.4983 17 7 4.8379 7.1962 -0.1969 18 14 4.5422 9.8452 0.5585 19 1 4.7987 10.2457 1.9652 20 1 5.7624 10.0830 -0.2537 21 1 3.4191 10.6485 0.0121 22 6 2.2364 -1.1207 0.7653 23 6 2.2364 -1.1207 -0.7654 24 9 1.4340 -2.0673 -1.4113 25 17 3.7829 -0.7136 -1.5983 26 1 -0.3633 0.0792 -1.0246 27 1 -0.3634 -0.9268 0.4437 28 1 -0.3634 0.8478 0.5808 29 1 2.2752 1.7424 -1.0247 30 1 3.1828 1.3085 0.4438 31 1 -0.4977 3.1805 2.1957 32 1 -1.7772 4.8432 3.4725 33 1 -0.9657 7.1579 3.6581 34 1 1.1260 7.8321 2.5613 35 1 5.6148 7.5213 -0.6782 36 1 3.1713 -0.8746 1.2689 37 1 1.6112 -1.8582 1.2685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821865500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = -124.903862 kcal Electronic energy + Delta-G solvation = -25148.454119 eV Core-core repulsion = 21025.758587 eV Total energy + Delta-G solvation = -4122.695531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.11556 -41.61030 -40.49384 -39.08351 -38.10905 -37.30641 -36.69737 -34.36794 -32.36445 -30.62906 -29.87515 -28.44556 -27.39090 -24.97533 -23.59860 -23.26670 -21.87661 -20.74862 -19.90216 -19.30538 -18.48878 -18.16386 -17.44156 -17.23420 -16.82167 -16.36207 -16.34760 -16.08115 -15.66819 -15.51875 -15.26829 -14.87871 -14.71412 -14.39602 -13.92291 -13.80849 -13.69005 -13.56561 -13.19374 -13.00377 -12.96992 -12.68721 -12.63350 -12.51848 -12.41740 -12.27100 -12.15210 -11.94020 -11.60802 -11.26417 -11.09208 -10.84419 -10.82811 -9.90915 -9.10422 -8.48066 -6.19241 -0.03285 0.34289 0.71134 1.33463 1.41176 1.46046 1.51060 1.73983 2.06989 2.14563 2.68736 2.83109 3.07887 3.16056 3.25490 3.38903 3.60306 3.95150 4.04565 4.11246 4.21814 4.27187 4.41669 4.53514 4.54288 4.62554 4.70019 4.81224 4.88013 4.94644 5.05815 5.13890 5.23507 5.37676 5.48755 5.61806 5.68608 5.93234 6.14346 6.90419 6.97198 7.72046 8.71705 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003407 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.735502 B = 8215.929319 C =10043.392579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.110 4.110 3 C 0.101 3.899 4 O -0.339 6.339 5 C 0.500 3.500 6 O -0.530 6.530 7 C -0.236 4.236 8 C -0.009 4.009 9 C -0.204 4.204 10 C -0.027 4.027 11 C -0.257 4.257 12 C 0.157 3.843 13 O -0.187 6.187 14 C -0.428 4.428 15 H 0.112 0.888 16 C -0.019 4.019 17 N -0.903 5.903 18 Si 1.022 2.978 19 H -0.252 1.252 20 H -0.275 1.275 21 H -0.253 1.253 22 C -0.123 4.123 23 C 0.096 3.904 24 F -0.146 7.146 25 Cl -0.123 7.123 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.272 0.728 36 H 0.133 0.867 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 -13.739 5.449 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.111 4.111 3 C 0.027 3.973 4 O -0.257 6.257 5 C 0.347 3.653 6 O -0.420 6.420 7 C -0.239 4.239 8 C -0.027 4.027 9 C -0.222 4.222 10 C -0.045 4.045 11 C -0.276 4.276 12 C 0.101 3.899 13 O -0.090 6.090 14 C -0.504 4.504 15 H 0.129 0.871 16 C -0.219 4.219 17 N -0.539 5.539 18 Si 0.840 3.160 19 H -0.176 1.176 20 H -0.200 1.200 21 H -0.177 1.177 22 C -0.160 4.160 23 C 0.052 3.948 24 F -0.126 7.126 25 Cl -0.096 7.096 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.151 0.849 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.015 -13.815 4.900 18.336 hybrid contribution 1.187 0.697 -0.927 1.660 sum -9.828 -13.118 3.974 16.866 Atomic orbital electron populations 1.21393 0.87615 1.04883 1.03479 1.22502 0.98756 0.88777 1.01078 1.22344 0.93238 0.86160 0.95560 1.86421 1.51744 1.19637 1.67858 1.21419 0.83664 0.81541 0.78650 1.91011 1.25330 1.79962 1.45661 1.18451 1.01937 0.90098 1.13374 1.21412 0.89442 1.00972 0.90904 1.21229 1.03093 0.92830 1.05036 1.21535 0.92457 0.97243 0.93309 1.21290 0.99888 1.00282 1.06187 1.19998 0.86020 0.93155 0.90692 1.84142 1.32452 1.27812 1.64571 1.22046 1.13234 0.81882 1.33221 0.87126 1.26762 0.94875 1.05819 0.94423 1.70293 1.16237 1.37769 1.29573 0.84622 0.78408 0.73381 0.79603 1.17637 1.19966 1.17742 1.24713 1.04459 0.98904 0.87943 1.23995 0.84683 0.94534 0.91600 1.92928 1.71932 1.64591 1.83144 1.98802 1.34718 1.93621 1.82494 0.91598 0.89036 0.89541 0.92007 0.91042 0.82146 0.81607 0.82327 0.85280 0.91896 0.84920 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.39 71.98 0.68 -1.37 16 2 C -0.11 -2.34 2.59 -52.18 -0.13 -2.48 16 3 C 0.10 3.11 4.65 71.98 0.33 3.44 16 4 O -0.34 -11.62 8.04 -56.70 -0.46 -12.08 16 5 C 0.50 22.72 7.89 70.23 0.55 23.28 16 6 O -0.53 -30.17 14.96 26.81 0.40 -29.77 16 7 C -0.24 -10.15 5.89 -20.00 -0.12 -10.27 16 8 C -0.01 -0.29 9.61 22.53 0.22 -0.07 16 9 C -0.20 -5.21 10.02 22.25 0.22 -4.99 16 10 C -0.03 -0.80 10.03 22.30 0.22 -0.57 16 11 C -0.26 -10.42 9.16 22.36 0.20 -10.21 16 12 C 0.16 7.79 6.66 22.92 0.15 7.94 16 13 O -0.19 -11.54 7.84 1.09 0.01 -11.53 16 14 C -0.43 -25.03 9.49 67.93 0.64 -24.38 16 15 H 0.11 5.72 5.21 -2.91 -0.02 5.70 16 16 C -0.02 -1.09 5.49 84.85 0.47 -0.63 16 17 N -0.90 -57.61 13.67 21.62 0.30 -57.32 16 18 Si 1.02 42.80 29.55 68.60 2.03 44.82 16 19 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 22 C -0.12 -1.90 9.65 30.62 0.30 -1.61 16 23 C 0.10 2.02 4.33 30.62 0.13 2.15 16 24 F -0.15 -3.14 17.14 44.97 0.77 -2.37 16 25 Cl -0.12 -3.13 28.43 -2.72 -0.08 -3.20 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.12 7.90 -2.39 -0.02 1.10 16 28 H 0.09 1.59 6.87 -2.39 -0.02 1.57 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.07 2.29 7.89 -2.39 -0.02 2.27 16 31 H 0.16 3.72 7.61 -2.91 -0.02 3.70 16 32 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.13 5.24 5.64 -2.91 -0.02 5.22 16 35 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 36 H 0.13 1.94 8.05 -2.38 -0.02 1.92 16 37 H 0.16 1.44 8.05 -2.39 -0.02 1.42 16 Total: -1.00 -80.63 343.72 7.96 -72.67 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.12 Total: 18.53 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.87 Total: -19.76 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.30 Total: -57.32 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.05 Total: -53.38 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.77 Total: -2.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.08 Total: -3.20 kcal Total: -80.63 7.96 -72.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821865500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.238 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds