Wall clock time and date at job start Tue Mar 31 2020 15:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34762 * 116.99753 * 2 1 4 4 O 1.21513 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.47384 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.39841 * 120.06577 * 359.97438 * 5 3 2 7 7 C 1.37628 * 119.96042 * 179.72402 * 6 5 3 8 8 C 1.39157 * 120.10251 * 0.57324 * 7 6 5 9 9 N 1.39156 * 119.93522 * 179.72446 * 8 7 6 10 10 N 1.40107 * 119.99414 * 359.71989 * 9 8 7 11 11 C 1.34777 * 119.99521 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72974 * 11 10 9 14 14 S 1.80997 * 109.47151 * 180.27780 * 13 11 10 15 15 C 1.76196 * 100.00314 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00626 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99674 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00584 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47012 * 89.99727 * 19 17 15 21 21 H 1.48501 * 109.47302 * 209.99797 * 19 17 15 22 22 H 1.48501 * 109.46788 * 330.00118 * 19 17 15 23 23 C 1.39401 * 120.13753 * 359.44750 * 8 7 6 24 24 F 1.35097 * 119.98618 * 180.27590 * 23 8 7 25 25 C 1.37766 * 120.03194 * 0.25292 * 23 8 7 26 26 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46971 * 299.99490 * 1 2 3 28 28 H 1.08995 * 109.47412 * 59.99860 * 1 2 3 29 29 H 1.07998 * 120.01827 * 0.02562 * 6 5 3 30 30 H 1.08005 * 119.94877 * 180.29241 * 7 6 5 31 31 H 0.97001 * 120.00592 * 179.73102 * 9 8 7 32 32 H 0.97000 * 120.00584 * 0.02562 * 10 9 8 33 33 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 34 34 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 35 35 H 0.97003 * 120.00297 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.05009 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5355 1.2780 -0.0006 6 6 4.2986 0.1061 -0.0006 7 6 5.6728 0.1807 -0.0068 8 6 6.3045 1.4206 -0.0012 9 7 7.6942 1.4919 -0.0017 10 7 8.4559 0.3160 -0.0021 11 6 9.8019 0.3851 -0.0032 12 8 10.3538 1.4651 -0.0034 13 6 10.6213 -0.8797 0.0026 14 16 12.3815 -0.4583 0.0078 15 6 13.0831 -2.0745 0.0147 16 1 12.4402 -2.9424 0.0143 17 6 14.4621 -2.2326 0.0196 18 7 15.2457 -1.1750 0.0185 19 14 15.2059 -3.9461 0.0262 20 1 15.4075 -4.4035 -1.3721 21 1 16.5130 -3.9156 0.7304 22 1 14.2884 -4.8812 0.7255 23 6 5.5480 2.5915 -0.0007 24 9 6.1645 3.7936 -0.0008 25 6 4.1720 2.5234 -0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.8097 -0.8569 -0.0006 30 1 6.2619 -0.7245 -0.0116 31 1 8.1356 2.3557 -0.0017 32 1 8.0146 -0.5478 -0.0023 33 1 10.3845 -1.4621 0.8931 34 1 10.3907 -1.4661 -0.8869 35 1 16.2094 -1.2853 0.0223 36 1 3.5857 3.4304 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837211276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:36 Heat of formation + Delta-G solvation = -120.286400 kcal Electronic energy + Delta-G solvation = -23632.715206 eV Core-core repulsion = 19544.556360 eV Total energy + Delta-G solvation = -4088.158846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.97527 -41.62602 -41.10466 -39.82306 -37.57667 -37.05752 -34.57013 -33.75876 -31.85967 -31.34989 -29.60972 -28.13102 -27.61194 -24.70641 -24.37766 -22.33416 -21.96088 -20.20450 -19.53842 -19.07693 -18.92982 -17.99544 -17.38014 -17.33034 -16.96149 -16.91599 -16.86364 -16.73967 -16.58034 -16.08986 -15.25353 -14.95312 -14.77230 -14.58702 -14.52983 -14.35998 -14.31505 -13.63435 -13.51864 -13.15586 -13.02477 -12.88395 -12.67478 -12.62569 -12.48128 -11.77679 -11.75141 -11.67363 -11.32262 -11.12890 -10.71297 -10.27619 -10.08022 -8.68594 -8.55011 -8.33736 -6.11779 -0.43009 0.06733 0.49806 1.29597 1.35830 1.44854 1.49663 1.53646 1.65048 1.68056 2.27521 2.54998 2.84540 3.01002 3.01492 3.29584 3.54424 3.68854 3.76890 4.00711 4.05442 4.28149 4.34185 4.37147 4.39097 4.50015 4.68862 4.78088 4.88938 4.92325 5.12733 5.26616 5.34039 5.44792 5.63002 6.00607 6.21533 6.36705 6.68806 7.08395 7.10269 8.75154 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.002010 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.876045 B =13923.656536 C =15006.061357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.518 3.482 4 O -0.544 6.544 5 C -0.179 4.179 6 C 0.009 3.991 7 C -0.188 4.188 8 C 0.226 3.774 9 N -0.529 5.529 10 N -0.505 5.505 11 C 0.537 3.463 12 O -0.559 6.559 13 C -0.120 4.120 14 S -0.146 6.146 15 C -0.544 4.544 16 H 0.090 0.910 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.255 1.255 23 C -0.002 4.002 24 F -0.146 7.146 25 C -0.033 4.033 26 H 0.135 0.865 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.434 0.566 32 H 0.442 0.558 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.270 0.730 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.266 -3.170 -0.046 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.366 3.634 4 O -0.436 6.436 5 C -0.183 4.183 6 C -0.010 4.010 7 C -0.211 4.211 8 C 0.118 3.882 9 N -0.250 5.250 10 N -0.256 5.256 11 C 0.323 3.677 12 O -0.435 6.435 13 C -0.272 4.272 14 S 0.080 5.920 15 C -0.691 4.691 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.179 1.179 23 C -0.027 4.027 24 F -0.125 7.125 25 C -0.053 4.053 26 H 0.153 0.847 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.194 0.806 30 H 0.184 0.816 31 H 0.277 0.723 32 H 0.289 0.711 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -28.249 -1.179 -0.043 28.274 hybrid contribution 0.101 -1.064 -0.006 1.069 sum -28.148 -2.243 -0.050 28.238 Atomic orbital electron populations 1.23582 0.74316 1.05918 1.02542 1.86522 1.25115 1.31350 1.83924 1.21055 0.89073 0.81521 0.71764 1.90838 1.67537 1.37138 1.48128 1.18582 0.89096 0.94188 1.16397 1.21489 0.92177 0.98709 0.88669 1.20674 0.95287 0.95034 1.10141 1.18244 0.80993 0.94763 0.94236 1.43352 1.00204 1.01537 1.79941 1.44725 1.02538 1.01540 1.76822 1.20418 0.80527 0.91252 0.75472 1.90750 1.71389 1.31239 1.50119 1.23267 0.98422 0.97189 1.08309 1.85727 0.95792 1.13329 1.97117 1.23225 0.94852 0.92401 1.58669 0.89239 1.26120 0.96664 1.02617 0.93833 1.70181 1.04882 1.31724 1.48094 0.84958 0.77511 0.76856 0.78705 1.19455 1.20753 1.17874 1.16756 0.90328 0.79042 1.16535 1.91484 1.82939 1.42922 1.95140 1.20914 0.91311 0.99118 0.93932 0.84677 0.91990 0.91995 0.80608 0.81584 0.72280 0.71109 0.85693 0.85684 0.92077 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.57 113.37 1.20 1.45 16 2 O -0.35 -4.81 9.80 -56.73 -0.56 -5.37 16 3 C 0.52 9.46 7.89 70.23 0.55 10.02 16 4 O -0.54 -13.17 16.13 19.79 0.32 -12.86 16 5 C -0.18 -2.88 5.88 -20.09 -0.12 -3.00 16 6 C 0.01 0.09 9.60 22.51 0.22 0.31 16 7 C -0.19 -2.23 9.45 22.35 0.21 -2.02 16 8 C 0.23 4.11 6.73 38.48 0.26 4.37 16 9 N -0.53 -11.80 6.43 -51.24 -0.33 -12.12 16 10 N -0.51 -10.81 6.21 -173.53 -1.08 -11.89 16 11 C 0.54 17.21 7.96 87.66 0.70 17.91 16 12 O -0.56 -23.65 15.70 -3.04 -0.05 -23.70 16 13 C -0.12 -4.02 6.16 71.24 0.44 -3.58 16 14 S -0.15 -7.55 20.57 -56.49 -1.16 -8.71 16 15 C -0.54 -29.04 9.50 67.95 0.65 -28.39 16 16 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 17 C 0.01 0.68 5.49 84.86 0.47 1.14 16 18 N -0.91 -54.28 13.22 21.65 0.29 -53.99 16 19 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 C 0.00 -0.04 7.30 22.44 0.16 0.13 16 24 F -0.15 -3.45 16.62 44.97 0.75 -2.70 16 25 C -0.03 -0.61 9.56 22.55 0.22 -0.39 16 26 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.18 0.93 7.60 -2.91 -0.02 0.90 16 30 H 0.17 0.98 6.17 -2.91 -0.02 0.97 16 31 H 0.43 11.33 7.46 -213.32 -1.59 9.74 16 32 H 0.44 5.56 6.57 -213.32 -1.40 4.16 16 33 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.13 3.55 8.14 -2.40 -0.02 3.53 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.15 2.76 7.64 -2.91 -0.02 2.74 16 Total: -1.00 -77.80 343.90 3.33 -74.48 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -1.83 Total: 15.26 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.95 Total: -2.06 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.12 Total: -78.00 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.28 Total: -41.92 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.75 Total: -2.70 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Total: -77.80 3.33 -74.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837211276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.809 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds