Wall clock time and date at job start Tue Mar 31 2020 14:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99736 * 2 1 4 4 H 1.48506 * 109.47147 * 270.00160 * 3 2 1 5 5 H 1.48496 * 109.47431 * 29.99921 * 3 2 1 6 6 H 1.48498 * 109.47322 * 150.00015 * 3 2 1 7 7 C 1.37868 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99946 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00096 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47518 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47255 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46832 * 179.97438 * 13 12 11 15 15 O 1.21224 * 120.00071 * 0.02562 * 14 13 12 16 16 O 1.34085 * 119.99650 * 179.97438 * 14 13 12 17 17 N 1.21803 * 116.99938 * 180.02562 * 16 14 13 18 18 C 1.30539 * 120.00017 * 180.02562 * 17 16 14 19 19 N 1.38472 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.47156 * 119.99762 * 179.97438 * 18 17 16 21 21 C 1.35289 * 125.39122 * 179.97438 * 20 18 17 22 22 C 1.37811 * 113.51513 * 180.02562 * 21 20 18 23 23 C 1.33607 * 114.98329 * 0.02562 * 22 21 20 24 24 S 1.70648 * 110.77180 * 359.72460 * 23 22 21 25 25 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47251 * 60.00318 * 9 7 2 27 27 H 1.09004 * 109.47048 * 299.99827 * 9 7 2 28 28 H 1.09005 * 109.47368 * 59.99164 * 11 10 9 29 29 H 1.09008 * 109.47085 * 299.99731 * 11 10 9 30 30 H 1.09002 * 109.46888 * 59.99316 * 12 11 10 31 31 H 1.09008 * 109.46827 * 300.00017 * 12 11 10 32 32 H 1.08997 * 109.47192 * 60.00030 * 13 12 11 33 33 H 1.08995 * 109.47010 * 299.99964 * 13 12 11 34 34 H 0.97000 * 119.99871 * 0.02562 * 19 18 17 35 35 H 0.96996 * 119.99565 * 180.02562 * 19 18 17 36 36 H 1.08005 * 123.23842 * 359.97438 * 21 20 18 37 37 H 1.08004 * 122.50803 * 180.02562 * 22 21 20 38 38 H 1.08003 * 124.61669 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3518 -5.3367 -0.0013 12 6 2.2086 -6.6042 -0.0020 13 6 1.2992 -7.8346 -0.0021 14 6 2.1433 -9.0830 -0.0034 15 8 3.3525 -8.9972 -0.0038 16 8 1.5567 -10.2888 -0.0031 17 7 2.2908 -11.2608 -0.0038 18 6 1.7819 -12.4629 -0.0041 19 7 0.4077 -12.6331 -0.0031 20 6 2.6688 -13.6372 -0.0054 21 6 2.2609 -14.9272 -0.0054 22 6 3.3000 -15.8324 -0.0062 23 6 4.5210 -15.2900 -0.0065 24 16 4.4263 -13.5861 -0.0132 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 0.7228 -5.3232 -0.8915 29 1 0.7223 -5.3237 0.8885 30 1 2.8379 -6.6179 0.8879 31 1 2.8378 -6.6169 -0.8921 32 1 0.6697 -7.8211 -0.8918 33 1 0.6704 -7.8216 0.8881 34 1 -0.1768 -11.8590 -0.0026 35 1 0.0297 -13.5264 -0.0030 36 1 1.2211 -15.2193 -0.0039 37 1 3.1394 -16.9004 -0.0067 38 1 5.4426 -15.8531 -0.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840212862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:23 Heat of formation + Delta-G solvation = 4.326781 kcal Electronic energy + Delta-G solvation = -21067.083325 eV Core-core repulsion = 17550.541289 eV Total energy + Delta-G solvation = -3516.542036 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41006 -39.00982 -38.27940 -35.97368 -34.49377 -33.13287 -31.46037 -30.10248 -28.57077 -28.21522 -25.51197 -23.58519 -22.92778 -21.51819 -20.61455 -19.77182 -19.18982 -18.17940 -17.47951 -17.37520 -16.57946 -16.42272 -15.81392 -15.45760 -15.32835 -14.72127 -14.18576 -14.14134 -13.74623 -13.41628 -13.26534 -13.17665 -12.71372 -12.57839 -12.47427 -11.99492 -11.87383 -11.74466 -11.64325 -11.17486 -10.90844 -10.88844 -10.74817 -10.64661 -10.08460 -9.88547 -9.52928 -9.41549 -8.93538 -8.83463 -8.60336 -8.15989 -6.67351 -6.18523 -4.22352 0.16047 1.10422 1.66361 1.68971 2.15890 2.18450 2.71166 2.79438 3.27646 3.33003 3.33165 3.39154 3.89227 4.13057 4.36942 4.57908 4.71015 4.86894 4.91919 4.92248 4.98852 5.18814 5.29799 5.41238 5.47869 5.49650 5.76306 5.84802 5.86097 6.12514 6.13253 6.34609 6.54188 7.06391 7.10497 7.11722 7.37697 7.76612 8.02707 8.53584 8.79701 9.40748 10.92856 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.001563 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.242037 B =17915.014814 C =18507.202287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.091 3.909 10 S -0.306 6.306 11 C -0.091 4.091 12 C -0.089 4.089 13 C -0.099 4.099 14 C 0.459 3.541 15 O -0.464 6.464 16 O -0.137 6.137 17 N -0.430 5.430 18 C 0.417 3.583 19 N -0.868 5.868 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.258 4.258 24 S 0.269 5.731 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.408 0.592 35 H 0.399 0.601 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 -34.202 -0.022 34.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.086 0.914 9 C -0.056 4.056 10 S -0.079 6.079 11 C -0.239 4.239 12 C -0.128 4.128 13 C -0.140 4.140 14 C 0.300 3.700 15 O -0.344 6.344 16 O -0.164 6.164 17 N -0.188 5.188 18 C 0.145 3.855 19 N -0.423 5.423 20 C -0.291 4.291 21 C -0.140 4.140 22 C -0.176 4.176 23 C -0.397 4.397 24 S 0.536 5.464 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.239 0.761 35 H 0.228 0.772 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.370 -32.322 -0.025 32.498 hybrid contribution -3.258 -0.790 -0.002 3.353 sum 0.112 -33.112 -0.027 33.113 Atomic orbital electron populations 1.69953 1.06145 1.27302 1.49845 1.24962 0.94976 0.99290 0.94665 0.86344 0.79761 0.82170 0.78347 1.20350 1.21001 1.19529 1.20706 0.93531 0.88784 1.52092 0.91433 1.21044 0.93645 0.90886 1.00009 1.86731 1.21079 1.02005 1.98053 1.23161 1.00493 0.95997 1.04243 1.21165 0.97040 0.89470 1.05102 1.21471 0.98626 0.87678 1.06188 1.24514 0.89052 0.82576 0.73836 1.90781 1.15544 1.86179 1.41942 1.83572 1.39068 1.13307 1.80434 1.71853 1.26462 0.91538 1.28929 1.19600 0.82159 0.88814 0.94894 1.42736 1.03909 1.11806 1.83891 1.22225 0.97895 0.93513 1.15488 1.20303 1.00938 0.90351 1.02360 1.19902 0.91075 1.01267 1.05327 1.25471 1.02912 1.01310 1.09961 1.83768 0.97970 0.99156 1.65522 0.92541 0.94639 0.94640 0.90697 0.90691 0.90062 0.90055 0.87267 0.87257 0.76126 0.77235 0.83869 0.84076 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.51 -14.61 9.13 -34.44 -0.31 -14.92 16 8 H 0.07 1.94 7.71 -52.48 -0.40 1.53 16 9 C 0.09 2.38 5.70 36.01 0.21 2.58 16 10 S -0.31 -6.72 21.66 -107.50 -2.33 -9.05 16 11 C -0.09 -1.44 5.94 37.16 0.22 -1.22 16 12 C -0.09 -1.23 4.51 -26.73 -0.12 -1.35 16 13 C -0.10 -1.02 5.81 -27.88 -0.16 -1.18 16 14 C 0.46 6.06 8.03 36.01 0.29 6.35 16 15 O -0.46 -7.91 16.12 -19.08 -0.31 -8.21 16 16 O -0.14 -1.68 9.26 -7.86 -0.07 -1.75 16 17 N -0.43 -5.62 9.85 32.49 0.32 -5.30 16 18 C 0.42 4.17 7.92 -153.81 -1.22 2.96 16 19 N -0.87 -5.55 8.96 32.44 0.29 -5.26 16 20 C -0.17 -1.49 6.43 -37.01 -0.24 -1.73 16 21 C -0.10 -0.64 9.83 -40.79 -0.40 -1.04 16 22 C -0.14 -0.82 10.16 -41.36 -0.42 -1.24 16 23 C -0.26 -1.58 10.93 29.11 0.32 -1.26 16 24 S 0.27 2.28 22.86 -107.50 -2.46 -0.18 16 25 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.96 8.14 -51.92 -0.42 0.53 16 28 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 29 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.08 1.21 8.10 -51.92 -0.42 0.79 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.41 2.39 8.02 -40.82 -0.33 2.06 16 35 H 0.40 1.43 7.57 -40.82 -0.31 1.12 16 36 H 0.14 0.49 7.12 -52.48 -0.37 0.12 16 37 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 38 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -34.59 362.58 -10.09 -44.68 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.77 Total: -1.27 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.94 Total: -10.33 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 1.35 Total: -35.88 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.38 Total: -9.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -4.79 Total: -9.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.59 -10.09 -44.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840212862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.007 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds