Wall clock time and date at job start Tue Mar 31 2020 14:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99736 * 2 1 4 4 H 1.48506 * 109.47147 * 270.00160 * 3 2 1 5 5 H 1.48496 * 109.47431 * 29.99921 * 3 2 1 6 6 H 1.48498 * 109.47322 * 150.00015 * 3 2 1 7 7 C 1.37868 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99946 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00096 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47518 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47255 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46832 * 179.97438 * 13 12 11 15 15 O 1.21224 * 120.00071 * 0.02562 * 14 13 12 16 16 O 1.34085 * 119.99650 * 179.97438 * 14 13 12 17 17 N 1.21803 * 116.99938 * 180.02562 * 16 14 13 18 18 C 1.30539 * 120.00017 * 180.02562 * 17 16 14 19 19 N 1.38472 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.47156 * 119.99762 * 179.97438 * 18 17 16 21 21 C 1.35289 * 125.39122 * 179.97438 * 20 18 17 22 22 C 1.37811 * 113.51513 * 180.02562 * 21 20 18 23 23 C 1.33607 * 114.98329 * 0.02562 * 22 21 20 24 24 S 1.70648 * 110.77180 * 359.72460 * 23 22 21 25 25 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47251 * 60.00318 * 9 7 2 27 27 H 1.09004 * 109.47048 * 299.99827 * 9 7 2 28 28 H 1.09005 * 109.47368 * 59.99164 * 11 10 9 29 29 H 1.09008 * 109.47085 * 299.99731 * 11 10 9 30 30 H 1.09002 * 109.46888 * 59.99316 * 12 11 10 31 31 H 1.09008 * 109.46827 * 300.00017 * 12 11 10 32 32 H 1.08997 * 109.47192 * 60.00030 * 13 12 11 33 33 H 1.08995 * 109.47010 * 299.99964 * 13 12 11 34 34 H 0.97000 * 119.99871 * 0.02562 * 19 18 17 35 35 H 0.96996 * 119.99565 * 180.02562 * 19 18 17 36 36 H 1.08005 * 123.23842 * 359.97438 * 21 20 18 37 37 H 1.08004 * 122.50803 * 180.02562 * 22 21 20 38 38 H 1.08003 * 124.61669 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3518 -5.3367 -0.0013 12 6 2.2086 -6.6042 -0.0020 13 6 1.2992 -7.8346 -0.0021 14 6 2.1433 -9.0830 -0.0034 15 8 3.3525 -8.9972 -0.0038 16 8 1.5567 -10.2888 -0.0031 17 7 2.2908 -11.2608 -0.0038 18 6 1.7819 -12.4629 -0.0041 19 7 0.4077 -12.6331 -0.0031 20 6 2.6688 -13.6372 -0.0054 21 6 2.2609 -14.9272 -0.0054 22 6 3.3000 -15.8324 -0.0062 23 6 4.5210 -15.2900 -0.0065 24 16 4.4263 -13.5861 -0.0132 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 0.7228 -5.3232 -0.8915 29 1 0.7223 -5.3237 0.8885 30 1 2.8379 -6.6179 0.8879 31 1 2.8378 -6.6169 -0.8921 32 1 0.6697 -7.8211 -0.8918 33 1 0.6704 -7.8216 0.8881 34 1 -0.1768 -11.8590 -0.0026 35 1 0.0297 -13.5264 -0.0030 36 1 1.2211 -15.2193 -0.0039 37 1 3.1394 -16.9004 -0.0067 38 1 5.4426 -15.8531 -0.0067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840212862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:22 Heat of formation + Delta-G solvation = -15.492285 kcal Electronic energy + Delta-G solvation = -21067.942744 eV Core-core repulsion = 17550.541289 eV Total energy + Delta-G solvation = -3517.401456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.26996 -39.84737 -38.97287 -36.66121 -35.62027 -35.28452 -32.24441 -30.72572 -30.65238 -29.25847 -26.20427 -25.29921 -24.07104 -22.52743 -21.54330 -20.31999 -19.86631 -19.02766 -18.61576 -18.39549 -18.11715 -17.18539 -17.06241 -16.51214 -16.49230 -16.24328 -15.45726 -15.06473 -14.71909 -14.50514 -14.43011 -14.30896 -14.03622 -13.63928 -13.48994 -13.25779 -13.19532 -12.89999 -12.73782 -12.49363 -12.48526 -11.92460 -11.90499 -11.86191 -11.65766 -11.48099 -10.88583 -10.74194 -10.65914 -9.94585 -9.52550 -8.92157 -8.47584 -8.33360 -6.46014 -0.41302 0.53954 0.89750 0.94674 1.14933 1.40214 1.41361 1.48981 1.53663 1.54942 2.07308 2.11461 2.37237 2.72730 3.01292 3.37141 3.81766 3.88315 3.96591 4.18882 4.35372 4.37191 4.46725 4.54326 4.57780 4.63754 4.95452 4.95682 4.98653 5.01964 5.17188 5.26603 5.29556 5.48336 5.57516 5.88448 5.90024 6.33094 6.60927 6.82634 7.21892 7.72855 8.78524 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.044916 B = 0.001563 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.242037 B =17915.014814 C =18507.202287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.097 3.903 10 S -0.336 6.336 11 C -0.072 4.072 12 C -0.081 4.081 13 C -0.085 4.085 14 C 0.459 3.541 15 O -0.516 6.516 16 O -0.129 6.129 17 N -0.487 5.487 18 C 0.431 3.569 19 N -0.850 5.850 20 C -0.204 4.204 21 C -0.081 4.081 22 C -0.149 4.149 23 C -0.242 4.242 24 S 0.204 5.796 25 H 0.271 0.729 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 -36.531 -0.034 36.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.051 4.051 10 S -0.109 6.109 11 C -0.220 4.220 12 C -0.120 4.120 13 C -0.125 4.125 14 C 0.303 3.697 15 O -0.400 6.400 16 O -0.152 6.152 17 N -0.250 5.250 18 C 0.159 3.841 19 N -0.407 5.407 20 C -0.324 4.324 21 C -0.116 4.116 22 C -0.180 4.180 23 C -0.380 4.380 24 S 0.471 5.529 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.244 0.756 35 H 0.246 0.754 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.021 -34.686 -0.039 34.745 hybrid contribution -2.915 -0.408 0.002 2.943 sum -0.894 -35.094 -0.037 35.106 Atomic orbital electron populations 1.70044 1.07547 1.28556 1.50085 1.25875 0.95904 1.02919 0.93778 0.85289 0.78434 0.77627 0.78768 1.19410 1.19856 1.19247 1.21027 0.93404 0.90484 1.52915 0.92296 1.20715 0.93842 0.92361 0.98155 1.86681 1.22285 1.03788 1.98121 1.23242 0.99677 0.93149 1.05924 1.20993 0.97116 0.90132 1.03743 1.21421 0.97559 0.84395 1.09146 1.25041 0.88656 0.83576 0.72465 1.90759 1.17680 1.86884 1.44692 1.83509 1.38296 1.13030 1.80405 1.71875 1.27611 0.92413 1.33117 1.19848 0.83520 0.88426 0.92337 1.42732 1.02703 1.13072 1.82161 1.22310 0.97238 0.94117 1.18689 1.20759 1.02722 0.89200 0.98937 1.20304 0.90493 1.02699 1.04469 1.25748 1.04325 0.99467 1.08453 1.84028 0.99608 1.02129 1.67177 0.92045 0.96381 0.96388 0.88994 0.88989 0.91562 0.91552 0.84176 0.84167 0.75609 0.75403 0.80740 0.81076 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.29 21.44 0.28 -54.02 16 2 C 0.02 0.91 5.46 84.65 0.46 1.38 16 3 Si 0.98 44.25 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -31.46 9.13 25.60 0.23 -31.23 16 8 H 0.06 3.46 7.71 -2.91 -0.02 3.43 16 9 C 0.10 5.18 5.70 71.24 0.41 5.59 16 10 S -0.34 -14.99 21.66 -56.49 -1.22 -16.21 16 11 C -0.07 -2.21 5.94 71.98 0.43 -1.78 16 12 C -0.08 -2.18 4.51 30.59 0.14 -2.04 16 13 C -0.09 -1.58 5.81 29.85 0.17 -1.41 16 14 C 0.46 12.07 8.03 71.24 0.57 12.65 16 15 O -0.52 -18.36 16.12 20.74 0.33 -18.02 16 16 O -0.13 -3.10 9.26 93.70 0.87 -2.24 16 17 N -0.49 -12.92 9.85 -51.13 -0.50 -13.43 16 18 C 0.43 8.28 7.92 135.92 1.08 9.35 16 19 N -0.85 -9.08 8.96 -51.28 -0.46 -9.54 16 20 C -0.20 -3.35 6.43 23.93 0.15 -3.19 16 21 C -0.08 -0.76 9.83 21.49 0.21 -0.55 16 22 C -0.15 -1.22 10.16 21.12 0.21 -1.00 16 23 C -0.24 -2.53 10.93 66.77 0.73 -1.80 16 24 S 0.20 3.54 22.86 -56.49 -1.29 2.25 16 25 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 30 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 31 H 0.07 1.99 8.10 -2.38 -0.02 1.97 16 32 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 3.96 8.02 -92.71 -0.74 3.21 16 35 H 0.41 1.70 7.57 -92.71 -0.70 1.00 16 36 H 0.18 0.43 7.12 -2.91 -0.02 0.41 16 37 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -78.84 362.58 4.49 -74.35 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -0.34 Total: 4.63 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.80 Total: -14.04 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -0.68 Total: -76.99 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 1.20 Total: -20.26 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -11.45 SS G_CDS: -2.51 Total: -13.96 kcal Total: -78.84 4.49 -74.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840212862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.853 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds