Wall clock time and date at job start Tue Mar 31 2020 15:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47325 * 2 1 4 4 S 1.81398 * 109.47110 * 120.00520 * 2 1 3 5 5 C 1.81407 * 102.99723 * 294.99789 * 4 2 1 6 6 C 1.50693 * 109.47023 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00074 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99542 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99943 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47379 * 59.99849 * 10 8 6 12 12 H 1.48504 * 109.46847 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47129 * 299.99595 * 10 8 6 14 14 C 1.50710 * 109.46768 * 239.99977 * 2 1 3 15 15 O 1.21288 * 119.99649 * 265.00122 * 14 2 1 16 16 N 1.34776 * 119.99632 * 85.00182 * 14 2 1 17 17 C 1.40029 * 119.99736 * 185.26978 * 16 14 2 18 18 C 1.38873 * 120.04350 * 33.28785 * 17 16 14 19 19 C 1.38095 * 119.95475 * 179.74509 * 18 17 16 20 20 C 1.38496 * 120.04518 * 0.24995 * 19 18 17 21 21 F 1.35096 * 119.95665 * 180.02562 * 20 19 18 22 22 C 1.38451 * 120.08775 * 359.97438 * 20 19 18 23 23 N 1.48024 * 119.97416 * 180.02562 * 22 20 19 24 24 O 1.21803 * 119.99621 * 179.97438 * 23 22 20 25 25 O 1.21791 * 119.99830 * 0.02562 * 23 22 20 26 26 C 1.38132 * 120.05111 * 0.04495 * 22 20 19 27 27 H 1.08997 * 109.46893 * 300.00098 * 1 2 3 28 28 H 1.09003 * 109.46792 * 59.99728 * 1 2 3 29 29 H 1.08998 * 109.47755 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46686 * 299.99969 * 5 4 2 31 31 H 1.08990 * 109.47098 * 59.99858 * 5 4 2 32 32 H 0.96997 * 119.99747 * 179.97438 * 9 8 6 33 33 H 0.97003 * 120.00312 * 5.27641 * 16 14 2 34 34 H 1.08001 * 120.02363 * 0.02562 * 18 17 16 35 35 H 1.08002 * 119.97577 * 180.27618 * 19 18 17 36 36 H 1.07992 * 120.02879 * 179.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1346 -0.8553 1.4810 5 6 1.5664 0.2152 2.8309 6 6 1.9984 -0.3691 4.1511 7 1 2.5584 -1.2923 4.1757 8 6 1.6787 0.2749 5.3276 9 7 0.9973 1.3993 5.2975 10 14 2.2148 -0.4490 6.9641 11 1 3.6960 -0.5478 7.0002 12 1 1.7506 0.4279 8.0691 13 1 1.6244 -1.8021 7.1240 14 6 2.0323 -0.7105 -1.2306 15 8 2.3207 -1.8873 -1.1760 16 7 2.1610 -0.0381 -2.3915 17 6 2.5213 -0.7208 -3.5597 18 6 2.1017 -2.0297 -3.7576 19 6 2.4537 -2.6995 -4.9128 20 6 3.2291 -2.0685 -5.8713 21 9 3.5720 -2.7253 -7.0010 22 6 3.6523 -0.7652 -5.6738 23 7 4.4805 -0.0930 -6.7002 24 8 4.8526 1.0538 -6.5271 25 8 4.7888 -0.6863 -7.7181 26 6 3.3027 -0.0917 -4.5195 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.0002 1.2083 2.7141 31 1 0.4793 0.2881 2.8037 32 1 0.7721 1.8522 6.1252 33 1 2.0040 0.9188 -2.4178 34 1 1.4966 -2.5220 -3.0106 35 1 2.1239 -3.7160 -5.0690 36 1 3.6334 0.9247 -4.3657 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840214585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:29 Heat of formation + Delta-G solvation = -55.897575 kcal Electronic energy + Delta-G solvation = -24166.289267 eV Core-core repulsion = 20080.922530 eV Total energy + Delta-G solvation = -4085.366737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.66866 -42.46760 -41.09580 -39.00919 -36.86138 -35.27474 -33.41996 -33.16459 -32.56989 -30.04276 -28.62167 -27.01179 -25.11418 -23.73741 -23.28758 -22.92060 -21.06744 -19.76044 -19.04290 -18.29017 -17.97716 -17.86076 -17.30808 -16.73544 -16.54650 -16.21948 -15.69146 -15.19947 -15.01247 -14.65590 -14.39742 -14.19465 -13.83450 -13.52559 -13.34841 -12.67856 -12.60642 -12.47461 -12.39024 -11.89710 -11.88781 -11.76896 -11.51284 -11.43676 -11.01879 -10.92338 -10.80989 -10.35372 -10.07181 -10.05522 -9.70841 -8.96770 -8.88318 -8.70607 -6.87512 -6.29985 -4.34522 -0.65751 0.16707 0.87067 0.88988 1.87726 2.17321 2.64839 2.73157 3.15416 3.22236 3.25635 3.29699 3.59709 3.75565 4.07816 4.12707 4.21654 4.27550 4.58905 4.74607 4.87788 4.89171 5.05473 5.07732 5.25665 5.30210 5.48083 5.48682 5.73802 5.89286 6.06944 6.11338 6.75229 6.93493 6.95500 7.27379 7.64533 7.65765 7.88838 8.67116 9.29367 10.81215 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.002158 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.396370 B =12971.109825 C =13211.612785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.103 0.897 4 S -0.233 6.233 5 C 0.080 3.920 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.068 3.932 9 N -0.892 5.892 10 Si 0.907 3.093 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.542 3.458 15 O -0.490 6.490 16 N -0.673 5.673 17 C 0.156 3.844 18 C -0.043 4.043 19 C -0.131 4.131 20 C 0.151 3.849 21 F -0.104 7.104 22 C -0.064 4.064 23 N 0.032 4.968 24 O -0.155 6.155 25 O -0.146 6.146 26 C -0.064 4.064 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 -2.042 -20.886 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.229 4.229 3 H 0.121 0.879 4 S -0.006 6.006 5 C -0.067 4.067 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.734 3.266 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.329 3.671 15 O -0.361 6.361 16 N -0.320 5.320 17 C 0.059 3.941 18 C -0.064 4.064 19 C -0.151 4.151 20 C 0.129 3.871 21 F -0.082 7.082 22 C -0.149 4.149 23 N 0.552 4.448 24 O -0.370 6.370 25 O -0.364 6.364 26 C -0.086 4.086 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.877 -4.026 -20.127 20.544 hybrid contribution -0.186 1.573 0.380 1.629 sum -1.063 -2.454 -19.747 19.927 Atomic orbital electron populations 1.21993 0.90739 1.03942 1.03149 1.23158 1.00759 1.03264 0.95710 0.87870 1.87260 1.75289 1.39798 0.98263 1.21201 0.98981 0.94950 0.91551 1.20579 1.36740 1.09403 0.88693 0.91473 1.24945 0.94657 0.94753 0.99325 1.69927 1.38266 1.16445 1.28380 0.86396 0.79277 0.79079 0.81849 1.19850 1.21005 1.19822 1.20399 0.76122 0.87450 0.83147 1.90748 1.45669 1.15660 1.84062 1.43664 1.69490 1.12830 1.06004 1.17448 0.96132 0.93070 0.87428 1.21602 0.95707 0.92995 0.96056 1.21204 0.99100 1.02287 0.92476 1.17335 0.96917 0.87952 0.84881 1.91667 1.89587 1.79774 1.47153 1.20868 1.06344 0.93896 0.93755 1.43296 0.99498 1.00843 1.01164 1.94558 1.56594 1.01754 1.84089 1.94615 1.59243 1.66444 1.16052 1.20589 0.94806 1.02435 0.90790 0.90003 0.92360 0.90845 0.94602 0.94239 0.92347 0.74332 0.81630 0.81686 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.08 37.16 0.34 -1.35 16 2 C -0.10 -1.35 3.18 -27.88 -0.09 -1.44 16 3 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 4 S -0.23 -4.70 20.38 -107.50 -2.19 -6.89 16 5 C 0.08 1.91 5.39 36.00 0.19 2.10 16 6 C -0.51 -13.82 9.13 -34.44 -0.31 -14.14 16 7 H 0.07 1.82 7.71 -52.48 -0.40 1.42 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -24.69 13.29 55.43 0.74 -23.96 16 10 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.54 6.78 6.69 -10.98 -0.07 6.71 16 15 O -0.49 -7.69 13.83 5.55 0.08 -7.62 16 16 N -0.67 -5.66 5.34 -9.84 -0.05 -5.72 16 17 C 0.16 1.33 6.28 -83.66 -0.53 0.80 16 18 C -0.04 -0.36 8.65 -39.40 -0.34 -0.70 16 19 C -0.13 -0.96 10.02 -39.54 -0.40 -1.35 16 20 C 0.15 1.40 7.25 -39.41 -0.29 1.11 16 21 F -0.10 -1.07 15.47 2.25 0.03 -1.04 16 22 C -0.06 -0.63 6.85 -79.90 -0.55 -1.18 16 23 N 0.03 0.38 4.45 33.98 0.15 0.53 16 24 O -0.15 -1.91 18.45 -29.46 -0.54 -2.46 16 25 O -0.15 -1.95 17.41 -29.46 -0.51 -2.46 16 26 C -0.06 -0.53 9.47 -39.40 -0.37 -0.90 16 27 H 0.08 1.12 6.92 -51.93 -0.36 0.76 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.04 0.96 7.14 -51.93 -0.37 0.59 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.42 2.19 8.82 -40.82 -0.36 1.83 16 34 H 0.17 1.48 6.41 -52.49 -0.34 1.14 16 35 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.17 1.08 7.61 -52.49 -0.40 0.68 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -31.45 340.48 -8.18 -39.63 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -3.48 Total: -2.16 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.51 Total: -8.63 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.84 Total: -29.14 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.98 Total: -12.53 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.03 Total: -1.04 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.19 Total: -6.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.45 -8.18 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.269 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds